current user: public

Please be advised that we have recently moved our server to a new location. We tried our best to fully test all functions on the website, but if something does not work for you please let us know.

Query: gi|60681243|ref|YP_211387.1| hypothetical protein (BF1751) [Bacteroides fragilis NCTC 9343] (Range: 1-157), from B.fragilis

Results of FFAS03 search in SCOP207
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
    .   10    .   20    .   30    .   40    .   50    .   60    .   70    .   80    .   90    .  100    .  110    .  120    .  130    .  140    .  150    .
# Score Template Links and tools%idFirst MDKEQFKSIVHPVMKANSFRRKGNSWYKTTAECIVVFNLQHSLYGKMFYINLAALLRKGDDLLFPKEYQCDIRMRFPIMEIEGYSTQMILDLESTIDEQLRSRLIENIINISIPILQKLESIDGIIELYGEKPELNNIYPFSSILYRKEMNNKLKAILast
1 -7.330d1usub_ d.83.2.1 (B:) Activator of Hsp90 ATPase, Aha1 {Baker`s yeast (Saccharomyces cerevisiae) [TaxId: 4932]}  ali model 3D-neighbors follow..  10......KEYFKQKIVGVEAGSVKDKKYAKIKSVSSIVNQRKGKVISLFDLKITVLIEGHVDSKDGSALPFEGSINVPEVAFDSEASSYQFDISIFKETSELSEAKPLIRSELLPKLRQ--IFQQFGKDLLAT......................... 138
2 -6.750d1r7la1 d.277.1.1 (A:1-96) Bacillus phage protein {Bacillus cereus [TaxId: 1396]}  ali model 3D-neighbors follow..  1MKPRDINKLIASKI--FGYEIKDDNIIKDGRYRLGIPLYSQNIESAWQVVE.......................................................................................................... 49
3 -5.960d1in4a1 a.4.5.11 (A:255-329) Holliday junction helicase RuvB {Thermotoga maritima [TaxId: 2336]}  ali model 3D-neighbors follow..  34VEADTLSEVYEPYLLQAGFLARTPRGRIVTEKAYKHLKYE..................................................................................................................... 73
4 -5.840d1m0da_ c.52.1.17 (A:) Endonuclease I (Holliday junction resolvase) {Bacteriophage T7 [TaxId: 10760]}  ali model 3D-neighbors follow..  10  1...SGLEDKVSKQLESKGIK-----FEYEEWKVPYVIPASNHTYTPDFLLPNGIFVETKGLWESDDRKK---HLLIREQHPELDIRIVFSSSRTKLYKGSPTSYGEFCEKHGIKFADKLIPAEWIKEPKKE.......................... 120
5 -5.780d1t33a1 a.4.1.9 (A:1-88) Putative transcriptional repressor YbiH {Salmonella typhimurium [TaxId: 90371]}  ali model 3D-neighbors follow..  13.AKSQLIAAALAQFGEYGLHATTRDIAALAGQNIAAITYYFGSKEDLY............................................................................................................. 59
6 -5.720d1gefa_ c.52.1.18 (A:) Archaeal Holliday junction resolvase Hjc {Pyrococcus furiosus [TaxId: 2261]}  ali model 3D-neighbors follow..  1MYRKQAERELIKLLEKHGFASKKVDLVAGNGKKYLCIEVKVTK.................................................................................................................. 51
7 -5.450d1whza_ d.50.3.2 (A:) Hypothetical protein TTHA1913 {Thermus thermophilus [TaxId: 274]}  ali model 3D-neighbors follow..  20  1MWMPPRPEEVARKLRRLGFMAKGGHRLYTHPDGRIVVVPFHSG.................................................................................................................. 46
8 -5.190d2voua2 d.16.1.2 (A:164-291) Dihydroxypyridine hydroxylase DhpH {Arthrobacter nicotinovorans [TaxId: 29320]}  ali model 3D-neighbors follow..  13LQPGEVADDVWNYFND------KFTYGLLDDGHLIAYPIPGRENAESPRLNFQWYWNVAEGPDLDELMTDVRGIRLPTSVHNNSLNPHNLRQFHSKGESLFKPFRDLVLNASSPFVTVVADA................................... 128
9 -5.140d2iu5a1 a.4.1.9 (A:1-71) Transcriptional activator DhaS {Lactococcus lactis [TaxId: 1358]}  ali model 3D-neighbors follow..  6ITQKIIAKAFKDLMQSNAYHQRRQTFYNYFQNQEELLS....................................................................................................................... 55
10 -5.130d3pfia2 a.4.5.0 (A:256-329) automated matches {Campylobacter jejuni [TaxId: 192222]}  ali model 3D-neighbors follow..  14  33EDENTIEDVIEPYLLANGYIERTAKGRIASAKSYSALKLNYE................................................................................................................... 74

FFAS is supported by the NIH grant R01-GM087218-01
1 2 6 4 6 7   jobs submitted since Jan 1, 2011
Comments and questions to: webmaster

Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Rodrigues AP, Grant BJ, Godzik A, Friedberg I. The 2006 automated function prediction meeting. BMC Bioinformatics. 2007 May 22;8 Suppl 4:S1-4.