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Query: gi|60681247|ref|YP_211391.1| hypothetical protein (BF1755) [Bacteroides fragilis NCTC 9343] (Range: 1-299), from B.fragilis

Results of FFAS03 search in SCOP207
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MKYFRFVCEIKAKSSEDVNKSRDCINEVGIYCAYLSRMYEYYFPATQTDNVVSITVCLIDNLQKTKYPTSCDMKVVSNVVNIDKFNQLTPKDKSFYIIDLCQQAIMSLVYEMQWNTEVFEHTYDKIISMGGLFREYWRKAKSSPNKQLKAQIYFEDDYEKDGIYIDFTDKRGKLIKRVQFAPKGYQIYCKGISELQWQDNSHVIIKRAFGHGFTKTSDYWMIGVDGSIEYHSPRVENTEINTHGLFDLGILYWEGKTIMQNPNKGLELIKKAADLNNKHAQKWLERNMKQRTDSEQKNDLast
1 -38.100d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]}  ali model 3D-neighbors follow..  17  1..........................................................................................................................................................................GGGTVKKDLKKAIQYYVKACELNEMFGCLS---------------LVSNSQINKQKLFQYLSKACELN--SGNGCRFLGDFYENGKYVKKDLRKAAQYYSKACGLNDQDGCLILGYKQYAGKGVVKNEK 112
2 -33.000d1ouva1 a.118.18.1 (A:28-290) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]}  ali model 3D-neighbors follow..  14  53..................................................................................................................NLKKAASFYAKACDLNHLLGNLYYSGQGVSQNTNKASKACDLKYAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLND----GDGCTILGSLYDAGRGTPKDL-----KKALASYDKACDLK--DSPGCFNAGNMYHHGEGATKNFKEALARYSKACELENGGGCFNLGAMQYNGEGVTRNEK 235
3 -13.700d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosome (Trypanosoma brucei) [TaxId: 5691]}  ali model 3D-neighbors follow..  31..............................................................................................................................................................................................................................NLAEAALAFEAVCQKEPEREEAWRSLGLTQAE----NEKDGLAIIALNHARMLKDIAVHAALAVSHTN......... 96
4 -11.800d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}  ali model 3D-neighbors follow..  17  57...............................................................................................................................................................................................................................IQEAITKFEEALLIDPKKDEAVWCIGNAYTS-TEAKHNFDLATQFFQQAVDEDNTHYLKSLEMTAKA......... 132
5 -11.200d3eska1 a.118.8.1 (A:223-349) Hop {Human (Homo sapiens) [TaxId: 9606]}  ali model 3D-neighbors follow..  18  14..........................................................................................................................................................................................................................YKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFE----KGDYNKCRELCEKAIEVG-AKAYARIGNSYFK......... 90
6 -10.200d1nzna1 a.118.8.1 (A:4-124) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]}  ali model 3D-neighbors follow..  11............................................................................................................................................................................................................................VEDLLKFEKKFQSEKAAGSVSKSTQFEYAWCLVR-TRYNDDIRKGIVLLEELLPKGQRDYVFYLAVGNYR......... 83
7 -10.200d2vsna1 a.118.8.1 (A:22-192) O-GlcNAc transferase, OGT {Xanthomonas campestris [TaxId: 314565]}  ali model 3D-neighbors follow..  13  14..............................................................................................................................................................................................................................DTTAGEMAVQRGLALHPGHPEAVARLGRVRWT----QQRHAEAAVLLQQASDAEHPGIALWLGHALED......... 79
8 -10.100d2v5fa_ a.118.8.1 (A:) automated matches {Human (Homo sapiens) [TaxId: 9606]}  ali model 3D-neighbors follow..  16  27...............................................................................................................................................................................................................................MEQALRQLDEGEISTIDKVSVLDYLSYAVYQ----QGDLDKALLLTKKLLELEHQRANGNLKYFEYI---MAKEKD 97
9 -9.840d2q7fa1 a.118.8.1 (A:127-191) automated matches {Bacillus subtilis [TaxId: 1423]}  ali model 3D-neighbors follow..  16  15..............................................................................................................................................................................................................................QPKLALPYLQRAVELNENDTEARFQFGMCLAN----EGMLDEALSQFAAVTEQD....................... 64
10 -9.340d2vyia_ a.118.8.1 (A:) automated matches {Human (Homo sapiens) [TaxId: 9606]}  ali model 3D-neighbors follow..  27..............................................................................................................................................................................................................................NFEAAVHFYGKAIELNPANAVYFCNRAAAYSK----LGNYAGAVQDCERAICIDYSKAYGRMGLALSS......... 92
11 -9.250d2vgxa1 a.118.8.1 (A:37-100) automated matches {Yersinia enterocolitica [TaxId: 630]}  ali model 3D-neighbors follow..  15..............................................................................................................................................................................................................................KYEDAHKVFQALCVLDHYDSRFFLGLGACRQA----MGQYDLAIHSYSYGAVMD....................... 64
12 -9.080d4j8ea_ a.118.8.0 (A:) automated matches {Norway rat (Rattus norvegicus) [TaxId: 10116]}  ali model 3D-neighbors follow..  12  35..............................................................................................................................................................................................................................ELQKAIDLFTDAIKLNPRLAILYAKRASVFVK----LQKPNAAIRDCDRAIEINSAQPYKWRGKAHRL......... 100

FFAS is supported by the NIH grant R01-GM087218-01
1 2 6 4 6 7   jobs submitted since Jan 1, 2011
Comments and questions to: webmaster

Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Rodrigues AP, Grant BJ, Godzik A, Friedberg I. The 2006 automated function prediction meeting. BMC Bioinformatics. 2007 May 22;8 Suppl 4:S1-4.