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Query: gi|60681337|ref|YP_211481.1| hypothetical protein (BF1846) [Bacteroides fragilis NCTC 9343] (Range: 1-71), from B.fragilis

Results of FFAS03 search in SCOP207
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
    .   10    .   20    .   30    .   40    .   50    .   60    .   70
# Score Template Links and tools%idFirst MFDNYAALSYNERENDFINIIIIYNTASYFISHLKMFLSFFIFRNKEKVYECNTLINNTLLNIDSETLSETLast
1 -6.080d3l0ra1 d.17.1.0 (A:3-109) automated matches {Soft tick (Ornithodoros moubata) [TaxId: 6938]}  ali model 3D-neighbors follow..  10  20...HFATSSQTEGREFYDTVVTVKEVETQVVAGMNYKLTIEISPSVCKIGEVQYSAEQCVPKDAQQK.... 83
2 -5.320d3imab_ d.17.1.0 (B:) automated matches {Colocasia esculenta [TaxId: 4460]}  ali model 3D-neighbors follow..  15  23...RFAVDEHNKKENALLQFSRLVKAKQQVVSGIMHHLTVEVIEGGKKK...................... 68
3 -5.220d5xgta_ b.40.4.0 (A:) automated matches {Staphylococcus aureus [TaxId: 46170]}  ali model 3D-neighbors follow..  20  42..........GEREADFINCVVFRRQADNVNNYLSKGSLAGV-RLQSRNYENQEGRRVFVTEVVCDSVQ.. 101
4 -4.440d1x3ea_ b.40.4.3 (A:) automated matches {Mycobacterium smegmatis [TaxId: 1772]}  ali model 3D-neighbors follow..  14  44........EWKDGEALFLRCNIWREAAENVAESLTRGSRVIV-RLKQRSFETREGEKRTVVEVEVDEIGPS 107
5 -4.330d1k8kd2 d.198.2.1 (D:121-284) ARPC2 (34 kDa subunit) {Cow (Bos taurus) [TaxId: 9913]}  ali model 3D-neighbors follow..  18  121...................INLIHTFRDYLHYHIKCSKAYIHTRMRAKTSDFLKVLNRARPDA........ 164
6 -4.220d1z24a1 b.60.1.1 (A:1-189) Insecticyanin {Tobacco hornworm (Manduca sexta) [TaxId: 7130]}  ali model 3D-neighbors follow..  17  107.............ATDYKNYAINYNCDYHPDKKAHSIHAWILSKSKVLEGNTKEVVDNVLHLIDASKFISN 168
7 -4.140d3ag3b1 f.17.2.1 (B:1-90) Mitochondrial cytochrome c oxidase, subunit II {Cow (Bos taurus) [TaxId: 9913]}  ali model 3D-neighbors follow..  19..................ELLHFHDHTLMIVFLISSLVLYIISLMLTTKLTHTSTMDAQEVET........ 63
8 -4.100d2epsa1 g.37.1.1 (A:408-446) PATZ1 {Human (Homo sapiens) [TaxId: 9606]}  ali model 3D-neighbors follow..  16  15.......................FSRPDHLNGHIKQV------HTSERPHKCQV................. 39
9 -4.060d1kxoa_ b.60.1.1 (A:) Bilin-binding protein {Cabbage butterfly (Pieris brassicae) [TaxId: 7116]}  ali model 3D-neighbors follow..  25  98........VFNVLSTDNKNYIIGYFCSYDEDKKGHMDLVWVLSRSMVLTGEAKTAVENYLPVVDSQKLVYS 163
10 -3.900d4n6ob1 d.17.1.0 (B:11-124) automated matches {Human (Homo sapiens) [TaxId: 9606]}  ali model 3D-neighbors follow..  20  18...QAAVASYNMGSNSYFRDTHIIKAQSQLVAGIKYFLTMEMGSTDCRKTR.................... 67

FFAS is supported by the NIH grant R01-GM087218-01
1 2 6 4 9 8   jobs submitted since Jan 1, 2011
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Friedberg I, Godzik A. Fragnostic: walking through protein structure space. Nucleic Acids Res. 2005 Jul 1;33(Web Server issue):W249-51.