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Query: gi|60681449|ref|YP_211593.1| MatE family transmembrane protein (BF1960) [Bacteroides fragilis NCTC 9343] (Range: 1-447), from B.fragilis

Results of FFAS03 search in SCOP207
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MQGIKNLTQGPINKQLFNLAMPIMATSFIQMAYSLTDMAWVGRLGSEAVAAVGSVGILTWMSGSISLLNKVGSEVSVGQSIGAQNHEDARNFASHNITIALIISLCWGGLLFLLARPIIGIYELEAHITENAIAYLRIISTGLPFIFLSAAFTGIYNAAGRSKIPFYISGTGLVLNILLDPLFIFGFGLGTNGAAYATWISQAAVFGIFIYQLRCRDALLGRFSFFTRLKKKYTHRILKLGLPVATLNTLFAFVNMFLCRTASEQGGHIGLMTFTTGGQIEAITWNTSQGFSTALSAFIAQNYAAGRTDRVIKSWHTTLLMTSIFGTLCTLLFVFFGNEIFALFVPEQAAYEAGGVFLRIDGYSQLFMMLEITTQGVFYGIGRTIPPAIISITCNYMRIPLAILFVRMGMGVEGIWWAVCVTTVAKGLILAGWFALIKRKVLSRPILLast
1 -94.800d5c6na_ f.61.1.1 (A:) DinF {Bacillus halodurans [TaxId: 272558]}  ali model 3D-neighbors follow..  20  3.QQSERLGTEAIPKLLRSLSIPAMIGMFVMALYNVVNTIFISYVGIEGVAGVTIAFPIMMIMMSMAGALGIGGASVISRRLGERRGEEANQVFGNILTVILVLSVIGFISAFTLLGPALQLFGATSVTQGYATDYLFPILLGSIFFFFAFAANNIIRSEGNATFAMVTMIVPAVLNILLDVLFIFGLNMGVLGASIATVIAQASVTGLVLRYFLTGKSTLSLHWSDLRMKGSVIKEVCLVGLPAFVQQSSASLMMIAINSMLLRFGSDFYVGVFGLVQRIMMFVMMPMMGIMQAMQPIVGYNYGAKQYSRLRETVMLGFKVATIFSIGIFALLMLFPEALLRVFTADREVIQAGVSAMHILFCVTFLIGAQIVAGGLYQSLGKPKQALILSLSRQIIFLIPLVLILPHIFGLSGVWWAFPIADVLSFILTVVLLYRDRNVFFLK... 446
2 -66.500d3mkua_ f.61.1.1 (A:) NorM {Vibrio cholerae [TaxId: 243277]}  ali model 3D-neighbors follow..  17  12.............SNLIKLATPVLIASVAQTGMGFVDTIMAGGVSAIDMAAVSIAASIWLPSILFGVGLLMALVPVVAQLNGAGRQHKIPFEVHQGLILALLVSVPIIAV-LFQTQFIIRFMDVEEAMATKTVGYMHAVIFAVPAYLLFQALRSFTDGMSLTKPAMVIGFIGLLLNIPLNWIFVYG-ELGGVGCGVATAIVYWIMLLLLLFYIVTSKRLVKVFETFHKPQPKELIRLFRLGFPVAAA-LFFEVTLFAVVALLVAPLGSTVVAAHQVALNFSSLVFMFPMSIGAAVSIRVGHKLGEQDTKGAAIAANVGLMTGLATACITALLTVLFREQIALLYTENQVVVALAMQLLLFAAIYQCMDAVQVVAAGSLRGYKDMTAIFHRTFISYWVLGLPTGYILGMTLGAKGFWLGFIIGLSAAALMLGQRLYWLQKQSDDVQL. 455
3 -5.800d1weoa1 g.44.1.1 (A:8-87) Cellulose synthase A catalytic subunit 7, IRX3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}  ali model 3D-neighbors follow..  10  1..................................................................................................................................................................................................................................................PKPLKNLDGQFCEICGDQIGLTVEGDLFVACNECGFPACRPCYEYERREGTQNCPQCKTRYGDEDEEDID....................................................................................................................................... 80
4 -4.170d2nwla_ f.49.1.1 (A:) automated matches {Pyrococcus horikoshii [TaxId: 53953]}  ali model 3D-neighbors follow..  12  43.............RLLKMLVMPIVFASLVVGAASISPA--LGRVGVKIVVYYLLTSAFAVTLIIMARLFNPGAGIHLAVGFGALANGQVLPTIFFAIILGIAITYLMNSENEKVRKSAETLLDAINGLAEAMYKIVNGVMQYAPIGVFALIAYVMAEQGVHVVGELAKVTAAVYVGLTLQILLVYFVLLKIYGIDPISFIKHAKDAMLTAFVTRSSSGTLPVTMRVAK-EMGISEGIYSFTLPLGATALYQGVCTFFIANALGSHLTVGQQLTIVLTAVLASIGTAGVPGAGAIMLAMVLHSVG............................................................................................................................................... 362
5 -3.710d4uyba2 c.13.1.0 (A:76-274) automated matches {Human (Homo sapiens) [TaxId: 9606]}  ali model 3D-neighbors follow..  10  2.....................PEVIQKYMPGGLCGYDRVWYDIIGPLDPKGLLFSVTKQDLLKTKMRDCERILHEC------DLQTERLGKKIETIVMIFDCEGLGLKHFWKPLVEVYQEFFGLLEENYPETLKFMLIVKATKLFPVGYNLMKPFLSEDTRRKIIVLGNNWKEGLLKLISP.......................................................................................................................................................................................................................................................................... 159
6 -3.580d3hz4a_ c.47.1.0 (A:) automated matches {Methanosarcina mazei [TaxId: 2209]}  ali model 3D-neighbors follow..  11  3.SSIIEFEDMTWSQQVEDSKKPVVVMYFEEYAKEYGSSAVFGRINIATNPWTAEKYGVQGTPTFKFF-----HGRPVWEQVGQIYPSILKNAVRDML.............................................................................................................................................................................................................................................................................................................................................................. 108
7 -3.580d2eama1 a.60.1.0 (A:8-74) automated matches {Human (Homo sapiens) [TaxId: 9606]}  ali model 3D-neighbors follow..  2.....RCPVQTVGQWLESIGLPQYENHLMANGFDNVQFMGSNVMEDQDLLEIGIL........................................................................................................................................................................................................................................................................................................................................................................................................ 51
8 -3.570d2i4aa_ c.47.1.1 (A:) automated matches {Acetobacter aceti [TaxId: 435]}  ali model 3D-neighbors follow..  11  2.EHTLAVSDSSFDQDVLKASGLVLVD--CKMIGPALGEIGKEFAGKVTVAKVNIETPNAYQVRSIPTLMLVRDGKVIDKKVGALPKSQLKAWVESA............................................................................................................................................................................................................................................................................................................................................................... 106
9 -3.510d2y9ua_ a.60.1.2 (A:) automated matches {Human (Homo sapiens) [TaxId: 9606]}  ali model 3D-neighbors follow..  13  1.......TDCSIVSFLARLGCSSCLDYFTTQGLTTIYQ--IEHYSMDDLASLKIP........................................................................................................................................................................................................................................................................................................................................................................................................ 46
10 -3.480d3apsa_ c.47.1.0 (A:) automated matches {Mouse (Mus musculus) [TaxId: 10090]}  ali model 3D-neighbors follow..  2.QASIDLTPQTFNEKVLQGKTHWVVDEFELLARMIKGKVRAGKVDCQAYPQTCQKAGIKAYPSVKLYQYERAKKSIWEEQINSRDAKTIAALIYGKL.............................................................................................................................................................................................................................................................................................................................................................. 111

FFAS is supported by the NIH grant R01-GM087218-01
1 2 6 4 9 8   jobs submitted since Jan 1, 2011
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Friedberg I, Godzik A. Fragnostic: walking through protein structure space. Nucleic Acids Res. 2005 Jul 1;33(Web Server issue):W249-51.