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Query: gi|60681605|ref|YP_211749.1| hypothetical protein (BF2124) [Bacteroides fragilis NCTC 9343] (Range: 1-361), from B.fragilis

Results of FFAS03 search in SCOP207
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MKPEKTAPVLAITPNEQIFLPKCYHRIQDICAVIYDQLTEIYKEKNYQDLYHTESILDGSETGMDELNKNKIHAIDWLTWNNKNKDLELILTKHIILSITSDFINFVFESLYCAKRGKITVAYALIRKPFTDELLILEQLLYNRSDFIYRFFHSDTVETYDPSSKNINKVDVIKNAVDCLTNPLFDADFVHDLRYNKLCEYGINGISNHALHIVTKNKNYRTEPQNFNFVFSQEEDFALYYKQYYWVVPYILIYAVDIIDKLIFSILKDTDNQNLSIVKRLRRTIGFSLFTESYLRTKKDSIFILFNKKIRFTCPICKNKYFLKRDDYEFFFETEAILCPKCNNDNLTIENIQKIKNIIGLLast
1 -8.060d2jnea1 g.41.18.1 (A:1-71) Hypothetical protein YfgJ {Escherichia coli [TaxId: 562]}  ali model 3D-neighbors follow..  13  1.....................................................................................................................................................................................................................................................................................................................MELHCPQCQHVLDQDNGHA---------RCRSCGEFIEMKALCPD....... 36
2 -7.730d1vd4a_ g.41.3.1 (A:) Transcription initiation factor TFIIE-alpha {Human (Homo sapiens) [TaxId: 9606]}  ali model 3D-neighbors follow..  16  1.........................................................................................................................................................................................................................................................................................................RIETDERDSTNRASFKCPVCSSTFTDLEANQLFDPMTGTFRCTFCHTEVEEDESAMPKKD.... 60
3 -6.810d2k2ca1 g.89.1.1 (A:1-82) automated matches {Human (Homo sapiens) [TaxId: 9606]}  ali model 3D-neighbors follow..  15  38.......................................................................................................................................................................................................................................................................................................................YTCRLCHDNNEDHQLDRFK---VKEVQCINCEKIQHAQQTCEE....... 77
4 -6.510d1nlta3 g.54.1.1 (A:139-212) Mitochondrial protein import protein mas5 (Hsp40, Ydj1), insert domain {Baker`s yeast (Saccharomyces cerevisiae) [TaxId: 4932]}  ali model 3D-neighbors follow..  14  20........................................................................................................................................................................................................................................................................................................................KCTSCNQGIKFVTRQMGPMIQRFQTECDVCHGTGDIIDPKDRCKSCNG. 68
5 -6.500d1twfl_ g.41.9.2 (L:) RBP12 subunit of RNA polymerase II {Baker`s yeast (Saccharomyces cerevisiae) [TaxId: 4932]}  ali model 3D-neighbors follow..  20  1...................................................................................................................................................................................................................................................................................................................ATLKYICAECSSKLSLSRTDA--------VRCKDCGHRILLKARTKRLVQF... 43
6 -6.460d1zbdb_ g.50.1.1 (B:) Effector domain of rabphilin-3a {Norway rat (Rattus norvegicus) [TaxId: 10116]}  ali model 3D-neighbors follow..  1.......................................................................................................................................................................................................................................................................EELTDEEKEIINRVIARAEKMETMEQERIGRLVDRLETMRKNVAGDGVNRCILCGEQLGMLGSASVVCEDCKKNVCTKCGVETSNNRP.......... 88
7 -6.180d1rwja_ a.138.1.1 (A:) Cytochrome c7 (cytochrome c551.5, PpcA) {Geobacter sulfurreducens, GSU1996 [TaxId: 35554]}  ali model 3D-neighbors follow..  19  20.............................................................................................................................................................................................................................................................................................................AFSHEFHLGMYKCNECHTKLFAYKAGAKRFTMADMDKCGACHNGKDA............. 69
8 -6.090d2rv6a1 g.37.1.0 (A:8-92) automated matches {Human (Homo sapiens) [TaxId: 9606]}  ali model 3D-neighbors follow..  16  26..................................................................................................................................................................................................................................................................................................................TNEKPYKCPQCSYASAIKANVHLRKHTGEKFACDYCSSKGHLKVHIERV...... 80
9 -6.040d1i77a_ a.138.1.1 (A:) Cytochrome c3 {Desulfovibrio desulfuricans, different strains [TaxId: 876]}  ali model 3D-neighbors follow..  7..................................................................................................................................................................................................................................................................................................KPLEFKGSQKTVMFPHAVHAKVECVTCHHQVDGKESFAKC-------GSSGCHDDLAGKQ........... 59
10 -5.990d2bq4a_ a.138.1.0 (A:) automated matches {Desulfovibrio africanus [TaxId: 873]}  ali model 3D-neighbors follow..  14  67..................................................................................................................................................................................................................................................................................................SFKATEKDPKFLMTAFHSKSPMSCQGCHKEMKTAKKTT------GPTACAQCHN................. 114

FFAS is supported by the NIH grant R01-GM087218-01
1 2 6 4 6 7   jobs submitted since Jan 1, 2011
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Rodrigues AP, Grant BJ, Godzik A, Friedberg I. The 2006 automated function prediction meeting. BMC Bioinformatics. 2007 May 22;8 Suppl 4:S1-4.