current user: public

Please be advised that we have recently moved our server to a new location. We tried our best to fully test all functions on the website, but if something does not work for you please let us know.

Query: gi|60682029|ref|YP_212173.1| putative bifunctional CbiF/CbiG cobalamin biosynthesis protein (BF2549) [Bacteroides fragilis NCTC 9343] (Range: 1-599), from B.fragilis

Results of FFAS03 search in SCOP207
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
    .   10    .   20    .   30    .   40    .   50    .   60    .   70    .   80    .   90    .  100    .  110    .  120    .  130    .  140    .  150    .  160    .  170    .  180    .  190    .  200    .  210    .  220    .  230    .  240    .  250    .  260    .  270    .  280    .  290    .  300    .  310    .  320    .  330    .  340    .  350    .  360    .  370    .  380    .  390    .  400    .  410    .  420    .  430    .  440    .  450    .  460    .  470    .  480    .  490    .  500    .  510    .  520    .  530    .  540    .  550    .  560    .  570    .  580    .  590    .
# Score Template Links and tools%idFirst MKTAIIVISEAGIALAKTLEQELPESEIFSTGTDTDCHSISNLQEAVPEIFHKFDAIIFIGAMGICIRAIAPHIEDKHKDPAVVCVDSTGRYAVSVLSGHIGGANGLTRYVASILGAEPVITTRSDRTGLWALDTLGKKYGWQTVPAESSDMNHLITLFVDCKPTALLLDIRDEGTTQLEHTLPPHVDVFYKFEDMDLRKYDLLLLVTPFIYNTSDTPALYYVPPVLHMGVGLARDAHPVDTVITHLMDVVVQANMIPLAIRTVSSIEEKKDEPVLKLLAEAYQTRLYTASQLSKIEVPTPSEVVNKHMGTPSVSEASALLSSGGGPLLLPKQKGANFTVAIAMDAASVRQGHIEIVGAGPGDPELISVRGRHFLEEADLILYAGSLVPRELTECAKAGATIRSSASMTLEEQFALMKEFYDRGQLVVRLHTGDPCIYGAIQEQMNFFDQYGMHYHITPGISSFQAAAAALQSQFTIPERVQTIILTRGEGRTPMPEKEKLSLLARSQSTMCIFLSAGVVDQVQRELLEHYPPTTPVAACYHLTWKDERIFRGQLQDLAKIVNENHLTLTTMIVVGDAIDNREGLSRLYSHQFKHLFRKLast
1 -67.300d1cbfa1 c.90.1.1 (A:21-251) Cobalt precorrin-4 methyltransferase CbiF {Bacillus megaterium [TaxId: 1404]}  ali model 3D-neighbors follow..  44  2................................................................................................................................................................................................................................................................................................................................................................KLYIIGAGPGDPDLITVKGLKLLQQADVVLYADSLVSQDLIAKSKPGAEVLKTAGMHLEEMVGTMLDRMREGKMVVRVHTGDPAMYGAIMEQMVLLKREGVDIEIVPGVTSVFAAAAAAEAELTIPDLTQTVILTRAEGRTPVPEFEKLTDLAKHKCTIALFLSSTLTKKVMKEFINGWSEDTPVVVVYKATWPDEKIVRTTVKDLDDAMRTNGIRKQAMILAGWALD................... 230
2 -65.600d3ndca1 c.90.1.0 (A:1-233) automated matches {Rhodobacter capsulatus [TaxId: 272942]}  ali model 3D-neighbors follow..  37  2................................................................................................................................................................................................................................................................................................................................................................TVHFIGAGPGAADLITIRGRDLIASCPVCLYAGSLVPEALLAHCPPGAKIVNTAPMSLDAIIDTIAEAHAAGQDVARLHSGDLSIWSAMGEQLRRLRALNIPYDVTPGVPSFAAAAATLGAELTLPGVAQSVILTRTSGRSAMPAGETLENFARTGAVLAIHLSVHVLDEVVQKLVPHYGEDCPVAIVWRASWPDQRVVRATLATLQTSLG-AELERTALILVGRSLATED................ 232
3 -57.400d3eeqa2 c.152.1.1 (A:10-214) Cobalamin biosynthesis protein G, CbiG {Sulfolobus solfataricus [TaxId: 2287]}  ali model 3D-neighbors follow..  23  6RGICIISASEDAFSAGETIKEKLKSFEIPV-------VHYRYKDAEIETIWKCYDAIVFVMALEGATRIVCKYAKSKTEDPAIVCIDDKINYVIPLLGGH-WGANDIARELSVILNSTPIITTAAEIKGKLSIERIANILIAKII--NPENIVKINAALLRDESICIDGI............................................................................................................................................................................................................................................................................................................................................................................................................................................. 165
4 -54.400d1pjqa2 c.90.1.1 (A:216-457) Siroheme synthase CysG, domains 4 and 5 {Salmonella typhimurium [TaxId: 90371]}  ali model 3D-neighbors follow..  23  1...............................................................................................................................................................................................................................................................................................................................................................GEVVLVGAGPGDAGLLTLKGLQQIQQADIVV-YDRLVSDDIMNLVRRDADRVFVHCVPQEEINQILLREAQKGKRVVRLKGGDPFIFGRGGEELETLCHAGIPFSVVPGITAASGCSAYSGIPLTHRDYAQSVRLVTGHLKTGGEL--DWENLAAEKQTLVFYMGLNQAATIQEKLIAGMQADMPVALVENGTSVKQRVVHGVLTQLGELAQ--QVESPALIIVGRVVALRDKLNWF........... 239
5 -53.400d1ve2a1 c.90.1.1 (A:1-235) Uroporphyrin-III C-methyltransferase (SUMT, UROM, CobA) {Thermus thermophilus [TaxId: 274]}  ali model 3D-neighbors follow..  23  1.............................................................................................................................................................................................................................................................................................................................................................MRGKVYLVGAGFGGPEHLTLKALRVLEVAEVVL-HDRLVHPGVLALAKGELKEGYGGKTPQEAITARLIALAREGRVVARLKGGDPMVFGRGGEEALALRRAGIPFEVVPGVTSAVGALSALGLPLTHRGLARSFAVATGH---------DPALPLPRADTLVLLMPLHTLGGLKERLLERFPPETPLALLARVGWPGEAVRLGRVEDLPGLGE--GLPSPALLVVGKVVGLYGELLPKDHG........ 234
6 -37.400d2z6ra_ c.90.1.1 (A:) Diphthine synthase, DphB {Pyrococcus horikoshii [TaxId: 53953]}  ali model 3D-neighbors follow..  15  2.................................................................................................................................................................................................................................................................................................................................................................LYFIGLGLYDERDITVKGLEIAKKCDYVF-AEFYTSLMAGTTLGRGKEIRVLSREDVELNFENIVLPLAKENDVAFLTPGDPLVATTHAELRIRAKRAGVESYVIHAPSIYSAVGITGLHIYKFGKSATVAYPEKENAERGLHTLLFLDIKAEKRMYMTANEAMELLLKVEDMKKGGFTDDTLVVVLARAGSLNPTIRAGYVKDLIR--EDFGDPPHILIVPGKLHIVEAE............... 247
7 -36.600d1wdea_ c.90.1.1 (A:) Diphthine synthase, DphB {Aeropyrum pernix [TaxId: 56636]}  ali model 3D-neighbors follow..  14  1.............................................................................................................................................................................................................................................................................................................................................................EAVTLLLVGWGYAP-GMQTLEALDAVRRADVVY-VESYTMPGSSWLYKSEARVVEASRRDLEERSREIVSRA-LDAVVAVVTAGDPMVATTHSSLAAEALEAGVAVRYIPGVSGVQAARGATMLSFYRFGGTVTLPGPWRGVTPISVARRIYLNLCAGLHTTALLQGVSLLLEADREYARELARLPSVLVEAGAGGGHRVLYWSSLERLST--ADVEGGVYSIVIPARLSGVEEWLLAAASGQRRPLEYD 269
8 -32.100d2w6ka1 c.151.1.1 (A:1-139) Cobalamin biosynthesis protein CobE {Pseudomonas aeruginosa [TaxId: 287]}  ali model 3D-neighbors follow..  25  1..........................................................................................................................................................................................................................MPLPIPSLLIAGIGCRRGC-SAEHLRALLERTLGEHGRSLAELDALASIDGKRDEPGLRQLATLLERPVLAPAVLHDYEPRSPSAVALRETGCSSVAEAAALALAGRADLLGAKRSDDRASIALARLL............................................................................................................................................................................................................................................................. 136
9 -30.300d2bb3a1 c.90.1.1 (A:1-195) Precorrin-6y methylase CbiE {Archaeoglobus fulgidus [TaxId: 2234]}  ali model 3D-neighbors follow..  20  2.................................................................................................................................................................................................................................................................................................................................................................IWIVGSGTCRGQ-TTERAKEIIERAEVIYGSRRAL-ELAGVVDDSRARILRSFKGDEIRR----IMEEGREREVAVISTGDPMVAGLGRVLREIAEDVEI--KIEPAISSVQVALARLKVDL-----SEVAVVDCHAK----DFDAELTELLKYRHLLILADSHFPLERL---------GKRRVVLLENLCMEGERIREGNADSIEL------ESDYTIIFVEREV.................... 195
10 -27.200d3by5a1 c.151.1.1 (A:8-130) Cobalamin biosynthesis protein CobE {Agrobacterium tumefaciens [TaxId: 358]}  ali model 3D-neighbors follow..  28  1.................................................................................................................................................................................................................................VTVAGIGCRKGA-ASDAIIAAVRAAERAFGV---TVDYLATAPLKADEAGLAEAAKGLSLSLVAQERLEAVAAETFSQASLDHSGSPSVSEAAALAAAGGARLVAPRLVVGDVTVAIAMTS............................................................................................................................................................................................................................................................. 122
11 -23.700d3eeqa1 c.151.1.1 (A:215-335) Cobalamin biosynthesis protein G, CbiG {Sulfolobus solfataricus [TaxId: 2287]}  ali model 3D-neighbors follow..  23  2..................................................................................................................................................................................................................................ISIGIGSKKDV-KMEEIRDGIYKVLERLNLKRERIGIIASI-----REEVKKIADEFNVRFVNEEEINNFMNPTPPSKTLIEVGLKGVAEISALIAGGNSKLILRKIAISNSTIAVATYE............................................................................................................................................................................................................................................................. 121
12 -20.600d1wyza1 c.90.1.1 (A:2-234) Putative methytransferase BT4190 {Bacteroides thetaiotaomicron [TaxId: 818]}  ali model 3D-neighbors follow..  11  1..............................................................................................................................................................................................................................................................................................................................................................ETALYLLPVTLGDTPLLPSYNTEIIRGIRHFIVEDVRSARRFLKKVDDSLTFYPLNKHTSPEDISGYLKPLAGGASMGVISAGCPAVADPGADVVAIAQRQKLKVIPLVGPSSIILSVMASGFNGQSFAFHGYLPIEPGERAKKLKTLEQ--RVYAESQTQLFIETPYRNHKMIEDILQNCRPQTKLCIAANITCEGEFIQTRTVKDWKGHIPELS-KIPCIFLLYK...................... 233

FFAS is supported by the NIH grant R01-GM087218-01
1 2 6 4 9 8   jobs submitted since Jan 1, 2011
Comments and questions to: webmaster

Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Friedberg I, Godzik A. Fragnostic: walking through protein structure space. Nucleic Acids Res. 2005 Jul 1;33(Web Server issue):W249-51.