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Query: gi|60682315|ref|YP_212459.1| hypothetical protein (BF2845) [Bacteroides fragilis NCTC 9343] (Range: 1-207), from B.fragilis

Results of FFAS03 search in SCOP207
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MLIILKQDDSCQVAQTTCTTNSLEIRYKDYSVLKKTLDLNTKSINSNSCIELIIYGTHGNEKEICKLTKPDIKDLSYFFKGKVCRLVLDACHSACHIPHFKEMLTDDGIILCHVGICQVNSIETKTGKDTYERWINGNKEGLKVWSDGIVPAIYTRKNNTLTYYECSKFEVDINHPFTGTEFKTYCLNLKSKGIKMVIKNHSDFDKILast
1 -6.850d3l60a_ c.43.1.0 (A:) automated matches {Mycobacterium tuberculosis [TaxId: 1773]}  ali model 3D-neighbors follow..  12  104LVPVVTDAQDKNTRELASRVAELITGAREGTLTPAELRGSTFTVSNFGALGVDDGVPVINHPEAAILGLGAIKPRPVVVGGEVVHRVVDGAQVAQFMCELRDLIESPETALLDL............................................................................................. 229
2 -6.540d1scza_ c.43.1.1 (A:) Dihydrolipoamide succinyltransferase {Escherichia coli [TaxId: 562]}  ali model 3D-neighbors follow..  19  108VTPVLRDVDTLGMADIEKKIKELAVKGRDGKLTVEDLTGGNFTITNGGVFGSLMSTPIINPPQSAILGMHAIKDRPMAVNGQVEHRLIDGRESVGFLVTIKELLEDPTRLLLDV............................................................................................. 233
3 -6.480d3maea_ c.43.1.0 (A:) automated matches {Listeria monocytogenes [TaxId: 265669]}  ali model 3D-neighbors follow..  10  108YVPVIKNADEKSIKGIAREISELAGKARNGKLSQADMEGGTFTVNSTGSFGSVQSMGIINHPQAAILQVESIVKRPVIIDDMIAHRILDGLLAGKFLQAIKANVEKISKENTAL............................................................................................. 233
4 -5.730d1rkia1 d.308.1.2 (A:1-98) Hypothetical protein PAE0736 {Pyrobaculum aerophilum [TaxId: 13773]}  ali model 3D-neighbors follow..  23  6.....................................................................................................................................IIKTIPKKEEIISRDLCDCIYYYDNSVI----CKPIGPSKVYVSTSLENLEKCLQLH---FKKLVKNIEIFDEV 73
5 -5.530d1nxma_ b.82.1.1 (A:) dTDP-4-dehydrorhamnose 3,5-epimerase RmlC {Streptococcus suis [TaxId: 1307]}  ali model 3D-neighbors follow..  10  76........................................................................................................PWDKYISVADGGKVLGTWVDLREGETFGNTYQTVIDASKFVPRGVANGFQVLSDFVAYSYLVNDWALELKPKYAFVNYADPSLDIKWENLEEAEVSEAD.... 177
6 -5.520d1kv9a1 a.3.1.6 (A:561-664) Quinoprotein alcohol dehydrogenase, C-terminal domain {Pseudomonas putida, hk5 [TaxId: 303]}  ali model 3D-neighbors follow..  19  35.........................................................HGMGTI----LIPDLRQSSDATREHFQQIVLQGALKPLGMPSFDDSLKPEEV.................................................................................................. 85
7 -5.410d1kb0a1 a.3.1.6 (A:579-675) Quinoprotein alcohol dehydrogenase, C-terminal domain {Comamonas testosteroni [TaxId: 285]}  ali model 3D-neighbors follow..  15  30.........................................................HGVPGVDRGGNIPNLGYMDASYIENLPNFVFKGPAMVRGMPDFTGKLSGDDV.................................................................................................. 81
8 -5.370d1dpba_ c.43.1.1 (A:) Dihydrolipoamide acetyltransferase {Azotobacter vinelandii [TaxId: 354]}  ali model 3D-neighbors follow..  13  120LVPVIRNVDQKSLLQLAAEAAELAEKARSKKLGADAMQGACFTISSLGHIGGTAFTPIVNAPEVAILGVSKASMQPVWDGKAF-CRVINGAAAARFTKRLGDLLADIRAIL................................................................................................ 242
9 -5.360d3l6ea1 c.2.1.0 (A:4-227) automated matches {Aeromonas hydrophila [TaxId: 380703]}  ali model 3D-neighbors follow..  13  2.................................HIIVTGAGSGLGRALTIGLV---ERGHQVSMMGRRYQRLQQQELLLGNAVIGIVADLAHHEDVDVAFAAAVEWGGLVLHCAGTGEFGPVGVYT-AEQIRRVMESNLVSTILVAQQTVRLIGERGGVLANVYCASKWGMR----------ESLRAELKDSPLRLVN......... 172
10 -5.150d1kmda_ d.189.1.1 (A:) Vam7p {Baker`s yeast (Saccharomyces cerevisiae) [TaxId: 4932]}  ali model 3D-neighbors follow..  11  14.....KINPKYVLYGVSTPNKRLYKRYSEFWKLKTRLERDVGSFPEKPGVLDRRWQRRYDDPEMIDERR---IGLERFLNELYNDRFDSRWRDTKIAQDFLQLSKPN.................................................................................................... 117

FFAS is supported by the NIH grant R01-GM087218-01
1 2 6 4 9 8   jobs submitted since Jan 1, 2011
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Friedberg I, Godzik A. Fragnostic: walking through protein structure space. Nucleic Acids Res. 2005 Jul 1;33(Web Server issue):W249-51.