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Query: gi|60682477|ref|YP_212621.1|(removed signalp:1-23) hypothetical protein (BF3007) [Bacteroides fragilis NCTC 9343] (Range: 24-588), from B.fragilis

Results of FFAS03 search in SCOP207
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst CYSTPDGVMSSLSQAEKIMESRPDSAMAILQHIPTPETLHGKAQADYSLLMTQAMDKNYINFTSDSLIKFAVGYYGGHTEDLVAKGKSFYYYGRVMESLDKVEDAMTFYLKAKDVLQSSDQFKLLGLVTEKIGDLNRRQKLLDAALNDYKESFDFYASIPDSLCMLYAYRNLGRGFLYKNQIDSAYYYYDKALYILNLKKYSAVGSILLELGVIHRSEKDYVGAEQYFLSFIEKEKDPEKLFSGYLALGNLYLYMDRLKDAERYLLLCLGSSNLVIKRDACECLYDLEKELNNFKGAIGYKDIADSLRIITQDIDIQNSIATLQSRYNSEKWQRESLQSSIEKKNILLISSFVSFIAIMVIIYIYYKYRTNQKLVKDINERIRKNDADIKMYQRQILNYQDLQRETLQDYRNQIGELHGKMSVLEDQNKALSLRLTEKKHDIPESEADDLYAIYMQALHILIMLRGKNIENTSGKKLLLDADWDKLFHLSNAIHGDFITRIKNDFPTLTKHDIEICCLLRFGIEHEVLGSIFLTETDSVTKAKRRMKKRLNLSASDDLDVFLLKYLast
1 -38.600d3txna1 a.118.8.9 (A:38-322) Proteasome regulatory subunit Rpn6, N-terminal domain {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}  ali model 3D-neighbors follow..  10  1....................................NDEERIRIKEQGILQQGELYKQEGKAKELADLIKVTRPFLSSISKAKAAKLVRSLVDMFLDMDAGTGIEVQLCKDCIEWAKQEKRTFLRQSLEARLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSARTTANAYCPPKVQGALDLQSLHAADERDFKTAFSYFYEAFEGFDSSVKALTSLKYMLLCKIMLGQSDDVNQLVSGKLAITYSGRDIDAMKSVAEASHKRADFQAALKEYKKELAEDVIVQA............................................................................................................................................................................................................................................................ 284
2 -37.200d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker`s yeast (Saccharomyces cerevisiae) [TaxId: 4932]}  ali model 3D-neighbors follow..  10  26..........................................................................SGSDSYKFEEAADLCVQAATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGEILEDLHDYAKAIDCYELAGEWYAQDQSALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRSLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDPNFADSRESNFLKSLEGDSEQLSEHCKEFDNFMRLDK------KITILNKIKESIQQQEDD........................................................................................................................................................................................................................................ 290
3 -30.500d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]}  ali model 3D-neighbors follow..  3............................................................................KDIREDTMHAEFNALRAQVAINDGNPDEAERLAKLALEELPP-GWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSEILFAQGFLQTAWETQEKAFQLINEEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDA....................................................................................................................................................................................... 317
4 -27.700d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase, OGT {Human (Homo sapiens) [TaxId: 9606]}  ali model 3D-neighbors follow..  12  11...QAGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAEAYSNLGNVYKERGQLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPDL------YCVRSDLGNLLKALGRLEEAKACYLKAIET------QPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTL-----DPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNH---AVVHGNLACVYYEQGLIDLAIDTYRRAIELQPHF--PDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVF............................................................................................................................................................................................................................... 335
5 -27.600d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]}  ali model 3D-neighbors follow..  11  8..........................................................................YQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQDPKHME------AWQYLGTTQAENEQELLAISALRRCLEL------KPDNQTALMALAVSFTNESLQRQACEILRDWLRYVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPND---YLLWNKLGATLANGNQSEEAVAAYRRALELQPGY--IRSRYNLGISCINLGAHREAVEHFLEALNMQRK............................................................................................................................................................................................................................................................... 272
6 -27.500d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]}  ali model 3D-neighbors follow..  12  14..............................................................QQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPDMPE------VFNYLGIYLTQAGNFDAAYEAFDSVLEL------DPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQD-----DPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEKSDKEQWGWNIVEFYLGNIS-EQTLMERLKADATDNTSLAE--HLSETNFYLGKYYLSLGDLDSATALFKLAVANNNFVEHRYALLELSLLGQD............................................................................................................................................................................................................................................... 259
7 -27.400d2vsna1 a.118.8.1 (A:22-192) O-GlcNAc transferase, OGT {Xanthomonas campestris [TaxId: 314565]}  ali model 3D-neighbors follow..  11  1.......................................................................................AWLMLADAELGMGDTTAGEMAVQRGLALHPGHPE------AVARLGRVRWTQQRHAEAAVLLQQASDAAPEHPG------IALWLGHALEDAGQAEAAAAAYTRAHQL-----LPEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVAQGVGAVEPFAFLSEDASAAEQLACARTR-AQAIAAS..................................................................................................................................................................................................................................................................................................... 167
8 -25.600d1wm5a2 a.118.8.1 (A:1-203) automated matches {Human (Homo sapiens) [TaxId: 9606]}  ali model 3D-neighbors follow..  11  6.....................................................................................AISLWNEGVLAADKKDWKGALDAFSAVQD-----------SRICFNIGCMYTILKNMTEAEKAFTRSINR------DKHLAVAYFQRGMLYYQTEKYDLAIKDLKEALIQLRGNQKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKSEPRH---SKIDKAMECVWKQKLYEPVV-VGKLFRPNERQVAQ---------LAKKDYLGKA............................................................................................................................................................................................................................................................................ 202
9 -21.700d3eska1 a.118.8.1 (A:223-349) Hop {Human (Homo sapiens) [TaxId: 9606]}  ali model 3D-neighbors follow..  13  1...................................................................................KQALKEKELGNDAYKKKDFDTALKHYDKAKELDPTN------MTYITNQAAVYFEKGDYNKCRELCEKAIEV-ENREDYRQIAKAYARIGNSYFKEEKYKDAIHFYNKSLAE.................................................................................................................................................................................................................................................................................................................................................................................. 107
10 -21.300d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]}  ali model 3D-neighbors follow..  5...................................................................................EVVGAYLALSDAQRVAGEYDEAAANCRRAMEISHTMPPEEAFAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEERKGE-----TPGKERMMEVAIDRIAQLG................................................................................................................................................................................................................................................................................................................................................... 155
11 -20.500d2vyia_ a.118.8.1 (A:) automated matches {Human (Homo sapiens) [TaxId: 9606]}  ali model 3D-neighbors follow..  17  3............................................................................LGSEEDSAEAERLKTEGNEQMKVENFEAAVHFYGKAIELNPAN------AVYFCNRAAAYSKLGNYAGAVQDCERAICI------DPAYSKAYGRMGLALSSLNKHVEAVAYYKKALEL-----DPDNETYKSNLKIAELKLREA........................................................................................................................................................................................................................................................................................................................................................ 130
12 -20.100d1ouva1 a.118.18.1 (A:28-290) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]}  ali model 3D-neighbors follow..  20  2.....................................................................................PKELVGLGAKSYKEKDFTQAKKYFEKACDLKE--------NSGCFNLGVLYYQEKNLKKAASFYAKACD--------LNYSNGCHLLGNLYYSSQNTNKALQYYSKACD-------LKYAEGCASLGGIYHDTRDFKKAVEYFTKACD-----LNDGDGCTILGSLYDAPKDLKKALASYDKACDLKD----SPGCFNAGNMYHHTKNFKEALARYSKACELENG............................................................................................................................................................................................................................................................... 214
13 -19.800d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosome (Trypanosoma brucei) [TaxId: 5691]}  ali model 3D-neighbors follow..  5..........................................................................YPFEANNPYMYHENPMEEGLSMLKLANLAEAALAFEAVCQKEPEREE------AWRSLGLTQAENEKDGLAIIALNHARML------DPKDIAVHAALAVSHTNEHNANAALASLRAWL.................................................................................................................................................................................................................................................................................................................................................................................... 111
14 -19.700d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]}  ali model 3D-neighbors follow..  12  3..............................................................................ADGALKRAEELKTQANDYFKAKDYENAIKFYSQAIELNPSN------AIYYGNRSLAYLRTECYGYALGDATRAIEL------DKKYIKGYYRRAASNMALGKFRAALRDYETVVKV---KPHDKDAKMKYQECNKIVKQKAFERAIA................................................................................................................................................................................................................................................................................................................................................... 135
15 -19.300d5lypa1 a.118.8.0 (A:93-228) automated matches {Baker`s yeast (Saccharomyces cerevisiae) [TaxId: 4932]}  ali model 3D-neighbors follow..  19  1............................................................................EDDAETKAKAEDLKMQGNKAMANKDYELAINKYTEAIKVLPTN------AIYYANRAAAHSSLKEYDQAVKDAESAISI------DPSYFRGYSRLGFAKYAQGKPEEALEAYKKVLDIEGDNATEAM-------------KRDYESAKKKVEQSLNLEKT........................................................................................................................................................................................................................................................................................................................................ 136
16 -19.000d5ganj_ a.118.8.1 (J:) Pre-mRNA splicing factor 6 {Baker`s yeast (Saccharomyces cerevisiae) [TaxId: 4932]}  ali model 3D-neighbors follow..  11  416.KAQKGDTRQTLVLIDQIIDFAPHNLDLRFFKIKLLGRSLQLDELRDFFQQTFSSLEDFKISGTERLYYKYVNFLRYQDLNEEAIHKFFLQLGQIYHSMGNIEMSRETYLSGTRLVPNC------PLLWVSLSKIDIDLKNPVRARSILDRGLLKNPDDVL------FYIAKIQMEIRLGNLDQAELLVTQALQKFPSN-----ALLWVEQIKLFKHGNKSSLKKTIFQDALRRTQND---HRVLLEIGVSFYAEAQYETSLKWLERALKKCSRY--GDTWVWLFRTYARLGK--DTVDLYNMFDQCEPT............................................................................................................................................................................................................................................................... 715
17 -17.200d4gcoa_ a.118.8.0 (A:) automated matches {Nematode (Caenorhabditis elegans) [TaxId: 6239]}  ali model 3D-neighbors follow..  13  5...................................................................................ELAQEEKNKGNEYFKKGDYPTAMRHYNEAVKRDPEN------AILYSNRAACLTKLMEFQRALDDCDTCIRL------DSKFIKGYIRKAACLVAMREWSKAQRAYEDALQV.................................................................................................................................................................................................................................................................................................................................................................................. 104
18 -17.100d4j8ea_ a.118.8.0 (A:) automated matches {Norway rat (Rattus norvegicus) [TaxId: 10116]}  ali model 3D-neighbors follow..  10  20.....................................................................................ANEKKGAAIDALNDGELQKAIDLFTDAIKLNPRL------AILYAKRASVFVKLQKPNAAIRDCDRAIEI------NPDSAQPYKWRGKAHRLLGHWEEAARDLALACKL.................................................................................................................................................................................................................................................................................................................................................................................. 117
19 -16.100d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}  ali model 3D-neighbors follow..  1.........................................................................................MDTETEFDRILLFEQIRQDAENTYKSNPLDAD------NLTRWGGVLLELSQFHSAITKFEEALLIDPKKDE------AVWCIGNAYTSFAFFDLATQFFQQAVDE-----QPDNTHYLKSLEMTAKAPQLHAEAYK................................................................................................................................................................................................................................................................................................................................................... 141
20 -16.000d5o9zg_ a.118.8.1 (G:) Pre-mRNA splicing factor 6 {Human (Homo sapiens) [TaxId: 9606]}  ali model 3D-neighbors follow..  10  579.EKNHGTRESLEALLQRAVAHCPKAEVLWLMGAKSKWLAGDVPAARSILALAEEIWLAAVKLESENDEYERARRLLAKARSSAPTARVFMKSVKLEWVQDNIRAAQDLCEEALRHYEDFPK------LWMMKGQIEEQKEMMEKAREAYNQGLKKCPHS------TPLWLLLSRLEEKIGQLTRARAILEKSRLKNPKNPG-----LWLESVRLEYRAGLKNIANTLMAKALQECPNSGILPHVLLAVAKLFWSQRKITKAREWFHRTVKID---DLGDAWAFFYKFELQHGTEEQQEEVRKRCESAEPRHGEL-----CAVSKDIANWQKKIGDILRLVAGR.............................................................................................................................................................................................................................. 931
21 -15.700d4kbqa_ a.118.8.0 (A:) automated matches {Human (Homo sapiens) [TaxId: 9606]}  ali model 3D-neighbors follow..  14  3.....................................................................................AQELKEQGNRLFVGRKYPEAAACYGRAITRNPLV------AVYYTNRALCYLKMQQHEQALADCRRALELDGQ-------VKAHFFLGQCQLEMESYDEAIANLQRAYSLAKEQRL............................................................................................................................................................................................................................................................................................................................................................................ 106
22 -15.300d1p4wa_ a.4.6.2 (A:) Transcriptional regulator RcsB {Erwinia amylovora [TaxId: 552]}  ali model 3D-neighbors follow..  13  21.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................KRLSPKESEVLRLFAEGFLVTEIAKKLNRSIKTISSQKKSAMMKLGVDNDIALLNYLSS. 79
23 -15.200d1yioa1 a.4.6.2 (A:131-200) Response regulatory protein StyR, C-terminal domain {Pseudomonas fluorescens [TaxId: 294]}  ali model 3D-neighbors follow..  16  4..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................DQLEQLFSSLTGREQQVLQLTIRGLMNKQIAGELGIAEVTVKVHRHNIMQKLNVRSLANLVHLVEKY 70
24 -15.100d2v5fa_ a.118.8.1 (A:) automated matches {Human (Homo sapiens) [TaxId: 9606]}  ali model 3D-neighbors follow..  14  4.....................................................................................AEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEIST-KVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQR------ANGNLKYFEYIMAKEKD............................................................................................................................................................................................................................................................................................................................................................................................. 97
25 -13.700d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}  ali model 3D-neighbors follow..  13  1...................................................................................EQVNELKEKGNKALSVGNIDDALQCYSEAIKLDPHN------HVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPD-------GKGYSRKAAALEFLNRFEEAKRTYEEGLKHEANNPQ............................................................................................................................................................................................................................................................................................................................................................................ 106
26 -13.400d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]}  ali model 3D-neighbors follow..  1..................................................................................................................................TQWKNALSEGQLQQALELLIEAIKASPK-------ASLRSSFIELLCIDGDFERADEQLMQSIKLFPEY-----LPGASQLRHLVKAAQARKDFAQGAATAKVLGENEE--LTKSLVSFNLSMVSQDYEQVSELALQIEELRQEKGFLTSFSDVRDIDDRLGGYIELFSTAGNYFLVPASINTLEIKSATSLLESVWR............................................................................................................................................................................................................................................. 189
27 -13.300d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]}  ali model 3D-neighbors follow..  16  19.............................................................................DVDKILLISEDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEIDPS-------TKALYRRAQGWQGLKEYDQALADLKKAQEIAP--EDKAIQAELLKVKQKIKAQKDKEKAA.................................................................................................................................................................................................................................................................................................................................................... 168
28 -13.200d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]}  ali model 3D-neighbors follow..  12  6..........................................................................YDYTDEEKVQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEKNIEISCNLNLATCYNKNKDYPKAIDHASKVLKIDKN-------VKALYKLGVANMYFGFLEEAKENLYKAASLNPNNLD-----IRNSYELCVNKLKEARK...................................................................................................................................................................................................................................................................................................................................................... 153
29 -12.900d2q7fa1 a.118.8.1 (A:127-191) automated matches {Bacillus subtilis [TaxId: 1423]}  ali model 3D-neighbors follow..  19  1......................................................................................DLFYMLGTVLVKLEQPKLALPYLQRAVELNENDTE------ARFQFGMCLANEGMLDEALSQFAAVTEQ.......................................................................................................................................................................................................................................................................................................................................................................................................................... 63
30 -12.300d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]}  ali model 3D-neighbors follow..  17  7...................................................................................................KDLKKAIQYYVKACELNEMFG--------CLSLVS---SQINKQKLFQYLSKACE--------LNSGNGCRFLGDFYENKKDLRKAAQYYSKACGLND-------QDGCLILGYKQYAVKNEKQAVKTFEKACRL........................................................................................................................................................................................................................................................................................................................................... 124
31 -12.200d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]}  ali model 3D-neighbors follow..  13  76.................................................................................................AKLFSDEAANIYERAISTLLKKNM-----LLYFAYADYEESRMKYEKVHSIYNRLLAIEDI-----DPTLVYIQYMKFARRAEGIKSGRMIFKKAREDARTRHHVYVTAAL----MEYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYI---DYLSHLNEDNNTRVLFERVLTSGSLEKSGEIWARFLAFESNIGDLASILKVEKRRF---TAFREEYEGKETALLVDRYKF............................................................................................................................................................................................................................................ 289
32 -12.100d5ompa3 a.118.8.0 (A:254-424) automated matches {Human (Homo sapiens) [TaxId: 9606]}  ali model 3D-neighbors follow..  12  7.............................................................................................................................................................DTKEKLEQAAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYESFLLAAFLNLAMCYLKLREYTKAVECCDKALGLDSAN---EKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQISMCQKKAKEHNERDRRIYANMFKKFAEQDAKEE.......................................................................................................................................................................................................................................................... 171
33 -12.100d2if4a2 a.118.8.0 (A:161-292) automated matches {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}  ali model 3D-neighbors follow..  17  11.............................................................................TVEERIGAADRRKMDGNSLFKEEKLEEAMQQYEMAIAYMGQDMALAVKNPCHLNIAACLIKLKRYDEAIGHCNIVLTEEEK-------PKALFRRGKAKAELGQMDSARDDFRKAQK................................................................................................................................................................................................................................................................................................................................................................................... 132
34 -11.700d1nzna1 a.118.8.1 (A:4-124) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]}  ali model 3D-neighbors follow..  10  1........................................................................................................................................................................MEAVLNELVSVEDLLKFEKKFQSEKAAGSVS-----KSTQFEYAWCLVRTRDIRKGIVLLEELLPKGSKEEQ-RDYVFYLAVGNYRLKEYEKALKYVRGLLQTE---QNNQAKELERLIDKAMKK................................................................................................................................................................................................................................................................................ 120
35 -11.000d2jpca_ a.4.6.0 (A:) automated matches {Salmonella typhimurium [TaxId: 602]}  ali model 3D-neighbors follow..  14  2..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................RERQVLKLIDEGYTNHGISEKLHISIKTVETHRMNMMRKLQVHKVTELLNCLIEY 61
36 -10.800d2vgxa1 a.118.8.1 (A:37-100) automated matches {Yersinia enterocolitica [TaxId: 630]}  ali model 3D-neighbors follow..  14  1......................................................................................EQLYSLAFNQYQSGKYEDAHKVFQALCVLDHYDSR------FFLGLGACRQAMGQYDLAIHSYSYGAVM.......................................................................................................................................................................................................................................................................................................................................................................................................................... 63
37 -10.700d4adya1 a.118.1.28 (A:309-753) Proteasome regulatory subunit Rpn2, PC domain {Baker`s yeast (Saccharomyces cerevisiae) [TaxId: 4932]}  ali model 3D-neighbors follow..  50.KAQNWAKFTATASLGVIHKGNLLEGKKVMAPYLPGSRASSRFIKGGSLYGLGLIYAGFGRDTTDYLKNIIVENSGTSGDEDVDVLLASLGIGLAAMGSAN-IEVYEALKEVL----YNDSATSGEAAALGMGLCMLGTGKPEAIHD----MFTYSQETQHGNITRGLAVGLALI---YGRQELADDLITK---MLASDESLLRYGGAFTIALAYAGTGNNSAVKRLLHVAVS-DSNDDVRRAAVIALGFV---LRDYTTVPRIVQLLSKSHNAHVRCGTAFALGIACAGKGL-QSAIDVLDPLTKDPVDFVRQAAMIALSMILIQQTEKLNPQVADINKNFLS............................................................................................................................................................................................................................. 376
38 -10.500d2rnja_ a.4.6.0 (A:) automated matches {Staphylococcus aureus [TaxId: 1280]}  ali model 3D-neighbors follow..  16  1......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ELYEMLTEREMEILLLIAKGYSNQEIASASHITIKTVKTHVSNILSKLEVQDRTQA....... 56
39 -10.500d1a04a1 a.4.6.2 (A:150-216) Nitrate/nitrite response regulator (NarL) {Escherichia coli [TaxId: 562]}  ali model 3D-neighbors follow..  17  1.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ERDVNQLTPRERDILKLIAQGLPNKMIARRLDITESTVKVHVKHMLKKMKLKSRVEAAVWVHQ. 63
40 -10.500d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]}  ali model 3D-neighbors follow..  12  1.................FVSLDSPSYVLYRDRVPQNDGPNPVVQIIYSDKFRDVYDYFRAVLQRDERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQDLHEEMNYITAIIEEQPKN------YQVWHHRRVLVEWLRDPSQELEFIADILNQDAK-------YHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVRNNSVQRYFVISNTTG-YNDRAVLEREVQYTLEMIKLVPHNES---AWNYLKGILQDRG-LSKYPNLLNQLLDLQPSHSSPYLIAFLVDIYNKEDILNKALELCEILAKEKDTIRKEYWRYIGRSLQSKHST............................................................................................................................................................................................................................................ 315
41 -10.500d1fsea_ a.4.6.2 (A:) Germination protein GerE {Bacillus subtilis [TaxId: 1423]}  ali model 3D-neighbors follow..  19  3.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................PLLTKREREVFELLVQDKTTKEIASELFISEKTVRNHISNAMQKLGVKGRSQ........ 54
42 -10.100d4jspa3 a.24.7.1 (A:1385-2001) mTOR FKBP12rapamycin-binding (FRB) domain {Human (Homo sapiens) [TaxId: 9606]}  ali model 3D-neighbors follow..  7...................................................................................................RAYAKALHYKELEFQKGPTPAILESLISINNKLQQ-YEKLHEWEDALVAYDKKMD--DDPELMLGRMRCLEALG-------EWGQLHQQCCEKWTLVNDETQAKMARMAAAAAVLALHQDLFSLAQQCIDKARDLLDAEESYSRAYGAMVSCHM-LSELEEVIQYKLVPERRESPHEDMRTWLKYASLCGKSGRLALAHKTLVLLLGVDPSRQLDRKIDAFQHMQHFVQTMQQQAQHAIATEDQQHKQELHKLMARCFLKLGEWQLNLQGINESTIPKVLQYYSAATEHDRSWYKAWHAWAVMNFEAVLHYKHQNQARDEKKKLRHASGANITNATTAATTAATATTTASTEGSNSESEAESTENSPTPSPLQKKVTEDLSKTLLMY---TVPAVQGFFRSISLSRGNNLQDTLRVLTLWFDYGHWPDVNEALVEGVKAIQIDTWQLIARID-TPRPLVGRLIHQL 576
43 -9.960d3ulqb_ a.4.6.0 (B:) automated matches {Bacillus subtilis [TaxId: 1423]}  ali model 3D-neighbors follow..  14  2...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................LTPRECLILQEVEKGFTNQEIADALHLSKRSIEYSLTSIFNKLNVGSRTE........ 51
44 -9.630d4lcta1 a.118.8.9 (A:32-324) COP9 signalosome complex subunit 1 (CSN1), N-terminal domain {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}  ali model 3D-neighbors follow..  12  77..............................................................................................CEAVDRRAEQKKVKLENELSSYRTNLIKESIRMGYNDFGDFYYACGMLGDAFKNYIRTRDYCTTTKHIIHMCMNAILVS---IEMGQFTHVTSYVNKAEQNPETLEPMVNAKLRCASGLAHLELKKYKLAARKFLDVNPELGNSYNEVIAPQDIATYLASFDRSELKQKVIDNINFRNFLELVPDVRELINDFYS--SRYASCLEYLASLKS................................................................................................................................................................................................................................................................... 288
45 -9.230d3c57a_ a.4.6.0 (A:) automated matches {Mycobacterium tuberculosis [TaxId: 1773]}  ali model 3D-neighbors follow..  15  1..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GLTDQERTLLGLLSEGLTNKQIADRMFLAEKTVKNYVSRLLAKLGMERRTQ........ 51
46 -9.130d1l3la1 a.4.6.2 (A:170-234) Quorum-sensing transcription factor TraR, C-terminal domain {Agrobacterium tumefaciens [TaxId: 358]}  ali model 3D-neighbors follow..  15  3.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AWLDPKEATYLRWIAVGKTMEEIADVEGVKYNSVRVKLREAMKRFDVRSKAH........ 54
47 -9.040d4cr2z1 a.118.1.28 (Z:368-909) Proteasome regulatory subunit Rpn1, PC domain {Baker`s yeast (Saccharomyces cerevisiae) [TaxId: 4932]}  ali model 3D-neighbors follow..  10  2.................FSSAGLDSAQQNLASS-----------FVNGFLNLG--------YCNDKLIVDNDNWVYKTKGDGMTSAVA--SIGSIYQWNLDGLQQLDKYLYVDEPEVKAGALLGIGISASGVHD-----GEVEPALLLLQDYVT----NPDTKISSAAILGLGIAFAGSKN-DEVLGLLLPIAASTDLPIETAAMASL-ALAHVFVGTCNGDITTSIMDNFLERTAIEKTDWVRFLALALGILYMGQGEQVDDVLETISAIEHPMTSAIEVLVGSCAYTGTGD--------LLIQDLLHRLTPKNVKGEEDADEEETAEGQTNSISDFLGEQVNEPTKNEEAEIEVDEMEV-------DAEGEEVEVKAEITEKKNGESLEGEEIKSEEKKGKSSDKDATTDGKNDDEEEEKEAGIVDELAYAVLGIALIALGEDIGKEMSLRHFGHLMHYGNEHIRRMVPLAMGIVSVSDPQMKVFDTLTRF-------SHDADLEVSMNSIFAMGLCGAGTNNARLAQLLR-SREQDALFITRLAQGLHVLNKVTLASIL... 515

FFAS is supported by the NIH grant R01-GM087218-01
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Friedberg I, Godzik A. Fragnostic: walking through protein structure space. Nucleic Acids Res. 2005 Jul 1;33(Web Server issue):W249-51.