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Query: gi|60683563|ref|YP_213707.1| putative SufE Fe/S-cluster-related protein (BF4142) [Bacteroides fragilis NCTC 9343] (Range: 1-142), from B.fragilis

Results of FFAS03 search in SCOP207
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MSINELQDEVVAEFSDFDDWMDRYQLLIDLGNEQEPLDEKYKTEQNLIEGCQSRVWLQADEVDGKIIFKAESDALIVKGIIALLIKVVSGHTPDEILNSELYFIDKIGLKDHLSPTRSNGLLSMVKQMRMYALAFKAKEAKGLast
1 -74.300d3g0ma_ d.224.1.1 (A:) automated matches {Salmonella typhimurium [TaxId: 99287]}  ali model 3D-neighbors follow..  30  1MAALPDKEKLLRNFTRCANWEEKYLYIIELGQRLAELNPQDRNPQNTIHGCQSQVWIVMRRNNGIIELQGDSDAAIVKGLMAVVFILYHQMTAQDIVHFDVPWFEKMALAQHLTPSRSQGLEAMIRAIRAKAATLS...... 138
2 -73.100d4lw4c_ d.224.1.1 (C:) automated matches {Escherichia coli [TaxId: 714962]}  ali model 3D-neighbors follow..  29  9FGTTVTAETLRNTFAPLTQWEDKYRQLIMLGKQLPALPDELKAQAKEIAGCENRVWLGYTVANGKMHFFGDSEGRIVRGLLAVLLTAVEGKTAAELQAQSPALFDELGLRAQLSASRSQGLNALSEAIIAAAKQV....... 145
3 -7.690d5ufta1 d.224.1.0 (A:1-143) automated matches {Brucella abortus [TaxId: 359391]}  ali model 3D-neighbors follow..  13  8........................KRILEFAGNIGQLAEPDAVATVHSKLCGSTVTVYLKMRDGVVT----KACALGQASSSVMARNVIGATADELRAARDAMYRMLKENGPAPEGRFADMKYF.................. 112
4 -7.180d2qq4a_ d.224.1.0 (A:) automated matches {Thermus thermophilus [TaxId: 274]}  ali model 3D-neighbors follow..  15  1................MSVLDELYREILQSPRNFGVLPQATKQAGGMNPSCGDQVEVMVLLEGDTIRFQGQG-CAISTASASLMTEAVKGKKVAEALELSRKFQAMV................................... 97
5 -6.810d2z7ea_ d.224.1.0 (A:) automated matches {Aquifex aeolicus [TaxId: 63363]}  ali model 3D-neighbors follow..  13  25.....................................ANGVGQCGNPACGAAMLFTIKVNPENDVIRFKTFG-CGSAIAVSSMLTEMVKGKPIQYALNLTYKDIFEE---GGLPPQKIHCTNLGLETLHVAIKDYLMKQGR. 128
6 -6.430d5x7va_ d.305.1.0 (A:) automated matches {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]}  ali model 3D-neighbors follow..  1..FMQDFEDIQKDIEQLD--IKCAHEQMNIQKQYDEKKKPLFEKRDEIIQKIPGFWANTLRKHPALSDIVPEDIDILNHLVKLDLKDNMDNNGSYKITFAKEFMEPLTLVKHVTFDNNQEKVVECTRIK............. 130
7 -5.370d1jida_ d.201.1.1 (A:) SRP19 {Human (Homo sapiens) [TaxId: 9606]}  ali model 3D-neighbors follow..  13  28..............................GRRIPISKAVENPTATEIQDVCSAVGLNVFLEKNKMYSREWNRDVQYRGRVRVQLKQEDGSLCLVQFPSRKSVMLYAAEMIPKLKTR......................... 114
8 -5.100d2nsfa2 d.106.1.2 (A:161-240) Micothiol-dependent maleylpyruvate isomerase {Corynebacterium glutamicum [TaxId: 1718]}  ali model 3D-neighbors follow..  15  24....................................................EGLVLLDEPSSTRYPAAPGQDEVVVSGSLAGIVRYAAGRGSDGVTSSTGEV....................................... 74
9 -4.890d4q14a_ b.3.4.0 (A:) automated matches {Brucella melitensis [TaxId: 359391]}  ali model 3D-neighbors follow..  13  7.........................HVLDTAHGTPAAAMRVELYRIAASGTPELLKRVVTNLDGRTDAPLLSGDEMRTGIYELQFHVAEYFEGRGAELAHEPFLDLIPIRFGIADEDGNYHVPLL................. 106
10 -4.720d1am2a_ b.86.1.2 (A:) GyrA intein {Mycobacterium xenopi [TaxId: 1789]}  ali model 3D-neighbors follow..  11  1.................................................AS----------------ITGDALVALPEGESVRIADIVPGARPNSDNAIDLKVLDRHGNPVLADRLFHSGEHPVYAVRTVEGLRVTGTANH. 76

FFAS is supported by the NIH grant R01-GM087218-01
1 2 6 4 6 7   jobs submitted since Jan 1, 2011
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Rodrigues AP, Grant BJ, Godzik A, Friedberg I. The 2006 automated function prediction meeting. BMC Bioinformatics. 2007 May 22;8 Suppl 4:S1-4.