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Query: gi|60680547|ref|YP_210691.1| hypothetical protein (BF1003) [Bacteroides fragilis NCTC 9343] (Range: 1-117), from B.fragilis

Results of FFAS03 search in VFDB
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MADVKEKINLLDVIPFRSENITAEKGSDGTVTIAFPRFKYEWMRRFLLPKGMSADIHVRLEDHGTAVWELIDGKRTVRRIIEELAEHFNYEENYESRITAYITQLQKDGFVKLVIENLast
1 -8.940[R] COG4797 Predicted regulatory domain of a methyltransferase  ali follow..  16  210.........................................................VGIPIHEKYILEMLDGTHNIDDIKKGVLEKINSKEFVDYVVNTSLEKFRMNYLL...... 282
2 -8.340[S] COG3219 Uncharacterized protein conserved in bacteria  ali follow..  169.......................................................MYQTLDGFDMMLLEIMSSALSFDTLAQTLVEFMPEDDNWKNILLGKWSGWTEQRII...... 225
3 -7.300[K] COG5625 Predicted transcription regulator containing HTH domain  ali follow..  17  17.........................................................IGLKKNEIRIYRLLRRGMRIREIQRELGIS-------ERSVRTHVLNLYRRGLLKRELVQ 72
4 -6.800[K] COG4190 Predicted transcriptional regulator  ali follow..  67...........................................................LTPRVLELIEAIEEPASINETARVVDRD-------VKNVHEELSRLAHLGIIFFEED. 118
5 -6.670[S] COG3698 Predicted periplasmic protein  ali follow..  10  186..................................................SRKTRDGVGVRKDGVAVFAISNGTVNFHTFARLFRDALGCDNALFLD.................... 232
6 -6.430[K] COG3682 Predicted transcriptional regulator  ali follow..  15  9.............................................................HVMEALWRR--SPLSADELVAEVGAAQSWGEAT---VKTLINRLLKKKAIKSERAE 59
7 -6.030[K] COG3355 Predicted transcriptional regulator  ali follow..  18  23.........................................................YGLSKSDVEVLHILNGKMTTDDLSQKLNVT-------KASISKALNNLLDKGLIQ..... 72
8 -5.980[K] COG3432 Predicted transcriptional regulator  ali follow..  20  38.............................................................EIMFDILRNCEPKCGITRVIYGAGINYV-------VAQKYLDQLVKVGALNIKTEN 86
9 -5.970[K] COG1695 Predicted transcriptional regulators  ali follow..  10  1...........................................................MDRYAIKALVLLKKPRTLYQMSKEISTGVQVSHGT---LMPMIRKLLQERYIDFETRG 56
10 -5.930[S] COG4860 Uncharacterized protein conserved in archaea  ali follow..  11  23............................................................SEVKRKLLLDLTGWITLPVIEQKYGKE----------GRRALLYLDKIKMIE..... 65

FFAS is supported by the NIH grant R01-GM087218-01
1 2 6 4 6 7   jobs submitted since Jan 1, 2011
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Rodrigues AP, Grant BJ, Godzik A, Friedberg I. The 2006 automated function prediction meeting. BMC Bioinformatics. 2007 May 22;8 Suppl 4:S1-4.