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Query: gi|60680762|ref|YP_210906.1| putative transmembrane conjugate transposon protein (BF1242) [Bacteroides fragilis NCTC 9343] (Range: 1-110), from B.fragilis

Results of FFAS03 search in VFDB
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
    .   10    .   20    .   30    .   40    .   50    .   60    .   70    .   80    .   90    .  100    .  110
# Score Template Links and tools%idFirst MADYPINRGIGKPVEFKGLKSQYLFIFAGGLLALFVLFIIMYMVGINQWVCIIFGVTSATLLVWLTFRLNEKYGTHGLMKLSARKSHPFHIINRKAISRLFTKNQKQASKLast
1 -8.930[U] KOG4112 Signal peptidase subunit  ali follow..  10....APLQKLSSHIDFQGQKVAERTYQVILTIAGIIGFLVGFWTQQLSYAMFTVLGASAFTALIILPPWPFLFRKNPI................................ 83
2 -7.400[S] KOG3831 Uncharacterized conserved protein  ali follow..  13  615LGNFEISLATSNAMMLMGSLLSVLLVMVTVALNQLVVY--LYYIALNTAISVVFFLV------------------HSIQELLLHRLQP...................... 694
3 -7.350[U] COG3702 Type IV secretory pathway, VirB3 components  ali follow..  13  13LLITPLVKGLTRAPTVLGIPYELAGFIGVLTAVVFLATHNLLMLCI................................................................ 58
4 -7.240[S] KOG4502 Predicted membrane protein  ali follow..  10  593LRINWGSRG-NLLESTAFLALSTVLSIPIIIILVYLEFFQNYVLFIEEIFTYVMGFFVILETLLSLVLT-ITFSSSG................................. 667
5 -7.120[R] KOG2296 Integral membrane protein  ali follow..  16  134....KIRAAVINNALY------YAIYSLCFLAILIYAMFKGVSINIENLKVIVVSASNTWGLFLLVVLLG-----HGLVE------LPRSLWHHGNRHYRLRKTYFDIEK 222
6 -6.450[S] COG3162 Predicted membrane protein  ali follow..  17  7.......QRIEDSARFRELVERFATILSVIMLAVYISFILLLGTPLHAGTSVTRGIPIGVGVIVISFVLTGIYIWRA................................. 86
7 -6.290[R] KOG4812 Golgi-associated protein/Nedd4 WW domain-binding protein  ali follow..  134.................GNDGIFMLAFFMAFIFNWLGFCLSFCITNTIAGRYGAICGFGLSLIKWILIVRFSLG-RGFVNYLKVRNMSESMAAAHRTRYFFL........ 241
8 -6.250[R] COG4824 Phage-related holin (Lysis protein)  ali follow..  16  1..................MEETSLFINFETLDLARVYLFGGVKYLDLLLVLSIIDVLTGVIKAWKFKKLRSRSAWFGYVRKLL........................... 65
9 -6.060[S] COG2246 Predicted membrane protein  ali follow..  13  42.........GHRKLTFLSKGRRFCVVQTTNITIIFVVTNLSRSGHFSGWLTFAIISVLIPMLNFLLFQL......................................... 107
10 -5.920[S] COG3216 Uncharacterized protein conserved in bacteria  ali follow..  12  46.TPTAVAAGVA------GV---FASFFPLGSHFAIAAIVCWLISGNMVAAGLGTFVFGNPLTLPFVVGATWETGK................................... 111

FFAS is supported by the NIH grant R01-GM087218-01
1 2 6 4 9 8   jobs submitted since Jan 1, 2011
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Friedberg I, Godzik A. Fragnostic: walking through protein structure space. Nucleic Acids Res. 2005 Jul 1;33(Web Server issue):W249-51.