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Query: gi|60680924|ref|YP_211068.1| putative anti-sigma factor (BF1413) [Bacteroides fragilis NCTC 9343] (Range: 1-311), from B.fragilis

Results of FFAS03 search in VFDB
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MDKDLLYNFYKGKVSIEEGQRVKAWVEASDENERAFYRERKIFDALMLNNPLPVKKTSFFNFTHYKKIEWLKIAMTVILTFLLSYFYQEYKAGLDSVAMSTISVPEGQRTNVTLPDGSNVWLNACTTIQYPTSFNSRERFVILKGEAYFDVKKNKSRPFIVHTDAYSIEVLGTKFNVDAYPETEKFETTLMHGSVKVTLKADSSQTVILKPDHKLSLEKGRFVMTKVEDYNPYRWKEGLICFSDESFPNIMKDFEKYYGVKIVIENKNVLQINFTGKFRQTDGIDYALRILQKNIDFQYEKDNEKQIIYIKLast
1 -44.700[PT] COG3712 Fe2+-dicitrate sensor, membrane component  ali follow..  18  19.....TSRPERPRIAPSDLAAVESWAAEEAGRDSAERETEAVWDALGALDAEDFGLSAPAPAPLWRRREVQIGGFTALAACLAAAVWLHGQGDVE-----TFATGAGERRIVALKDGSRLELNTRSHLE--VRISSRERHVRMDGEALFMVAARPDQPFTIDAGAARIKVTGTQFNVRK--TSDQTRVDLLEGHVEVR-GRDAEQTLRLGAGQAVTVSASGAVRQPADRAAVNDWRAGRVTLTRARLDAAVAHINRYARKPLTLAEPALGDLTVDGVFEARD-TGTFARAVASLHNLELREQPDRIVLS.. 327
2 -9.770[S] COG4254 Uncharacterized protein conserved in bacteria  ali follow..  16  40.EPPVAYVVKPG----DTLIGLGRAYLNRPSDYRRVQKANGVQEPRRLRPGSQLNIDPNLLKSTPIAATLSAFTGPVQIETNGQ--RTPARVGMPLSEGQWIITGPGAFATFELEDASRVTLPSNTRIRIAKL-NAPQRVFQLQGKGTISATPTPGARFEVRTPVSVSAVRGTEFRVGA--GADKAQTEVLVGAVGVDAGASASDNAPIQAGFGVSASAD........................................................................................... 258
3 -8.270[K] COG5662 Predicted transmembrane transcriptional regulator (anti-sigma factor)  ali follow..  7ITEDDLHAYVDGLLSDDDRAAVESWLAERPEDQSRVQAWKKQADILRNAFASYAAAHPHDASRTWRLKPALLRTAAALLIFVAGAAAGRLLPSSFSTPQDVTLASLTTDIPAQAKSAYLIYASEVRHPVEVGAGEQQHLATWLGKRLGYPFA-------IPDLSKIGYDLVGGR--LIPVSGKP---------GAMLMYQDKTGRRVTVLVGHNEENRTTSFRMASADGVETFYWIDNELGYSRDEVQAIAEECYR....................................................... 258
4 -5.780[F] COG0194 Guanylate kinase  ali follow..  16  49....................................................................................................VLSGPSGVGKGTVR---QAIFSQEDTKFEYSISVTTRSREGEVNGVDYFFKTRDEFEQMIADNKLLEAEYVGNYYGTPVDYVEQTLQD--VQGALQVRNAFPEGLFIFLAPPSLSELKN-RIVTRGTETDALI----------ENRMKAAKAEIEMMDAYDYVVENDNVET........................................ 214
5 -5.640[T] COG5599 Protein tyrosine phosphatase  ali follow..  13  456..........................................................................................TSISRKNRYTDIVPYDKTRVRLAVPKGCSDYINASHIDVGNKKYIACQAPKPGTLLDFWEMVWHNSGTNGVIVMLTNLYEAGSE-KCSQYWPDNKDHALCLEGGLRISVQKYETFEDLKVNTHLFRLDKPNGPPKYIHHFWVHTWFD-----DIESITGIIRCIDKVPN--FVHCSAGVGR---TGTF----AVDQILQVPKNILPKTTNLEDSKDFIF.. 668
6 -5.630[T] COG2310 Uncharacterized proteins involved in stress response, homologs of TerZ and putative cAMP-binding protein CABP1  ali follow..  12  2....................................................................................................GVSLSKGGNVSLS--DASAFLLTANGKVRNDADFKSSDGSVMHTGDNRTGEGEGDDESLKIKLPLIPADVDKIVFVVTIHDAQARRQSFGQVANAFIRLVNDDNGVEIARYDLSEDASTETAMLFGELYRHNAEWK---FRAVGQGYAGGLSSVCAQYGINAS................................................ 192
7 -5.530[S] KOG2618 Uncharacterized conserved protein  ali follow..  13  116.........................................................................................................................FNARSSVAEKASFRRPKNRCLVAVDGFYE-EGSKKQPYYIHFEDGRPLVFAALFDTWQNSGGETLYTILTTASSSALQWLHDRMPVILGDKDSID-----------------TWLDD----STTKLQPLLSPYEVWYPVTSAIGKPTFDGPECIQQIPLKTSQNSLISKF.................... 276
8 -5.360[K] COG2932 Predicted transcriptional regulator  ali follow..  11  31ISQQALKNWESRGIAAKALPEVAKWLRTGEGSRTAPVLIDPDLPHEVKDIHRPMTWSSNDPLPDDDYVFVPYLKESCFKGGVGTYEIPDYNGYRLPFGKSTLKTLTGDSMEEKIAEDAAIAVDTGET--YAFAQDGMKYLIRQPGNSVLIRSHNSGFYGDENAPLDSLTVIGRVF........................................................................................................................................ 232
9 -5.220[S] KOG2107 Uncharacterized conserved protein, contains double-stranded beta-helix domain  ali follow..  14  1.....................MQAWFMDDSNEDQRLPHHRNPKELVSLDY---------------------------LAELGVLYWKLNPENYENDSELSKIREDRGYDYMDLLPEKVSNYEEKLKNFFTEHIHKDEEIRYCLAGSGYFDVRDKDDRWIRIWMQPGDLIVLGIYHRFTLDASNYIKLMRLFVGEPVWTPYNRPQEEHPVRKKYIHGLTYK........................................................................................... 177
10 -5.060[S] COG2135 Uncharacterized conserved protein  ali follow..  12  80.........................................................................................................................FNIRSTAAEKNSFKASHRRALVPASGFYEEGRNKSQAYWVRPRNGGVVAFGALMETWSSADGSQIDTILTTSANGLLQPIHERMPVVVQPEDYR------------------RWLDCKQF-LAREVADIMRPVQEAIPVSGKVNKVANTSPDLQERVTEDLT............................ 234

FFAS is supported by the NIH grant R01-GM087218-01
1 2 6 4 6 7   jobs submitted since Jan 1, 2011
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Rodrigues AP, Grant BJ, Godzik A, Friedberg I. The 2006 automated function prediction meeting. BMC Bioinformatics. 2007 May 22;8 Suppl 4:S1-4.