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Query: gi|60681337|ref|YP_211481.1| hypothetical protein (BF1846) [Bacteroides fragilis NCTC 9343] (Range: 1-71), from B.fragilis

Results of FFAS03 search in VFDB
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
    .   10    .   20    .   30    .   40    .   50    .   60    .   70
# Score Template Links and tools%idFirst MFDNYAALSYNERENDFINIIIIYNTASYFISHLKMFLSFFIFRNKEKVYECNTLINNTLLNIDSETLSETLast
1 -5.080[S] KOG4096 Uncharacterized conserved protein  ali follow..  13  39LLGGFMGFRAGMRGKDLLLQTGKTVAQS-VFMGVAQGLRYIFFKN.......................... 87
2 -4.920[TR] KOG4561 Uncharacterized conserved protein, contains TBC domain  ali follow..  17  170.....PTYLSWELSTPFLNIHYFLGSKFQMINGFILIVTFICVR........................... 214
3 -4.860[R] COG0780 Enzyme related to GTP cyclohydrolase I  ali follow..  11  38..TLFKSNCPVTGQPDWASVTVRYFGVPIDHEGLLRYFI---FRHHAEFHEVERIFQDVLQRCSPQCLA.. 104
4 -4.800[S] KOG4502 Predicted membrane protein  ali follow..  543....................ILLSLQKTLSIVYFLVIFILYFYKGAILPYPRYVRVMEFFV.......... 583
5 -4.630[Z] KOG2826 Actin-related protein Arp2/3 complex, subunit ARPC2  ali follow..  17  243...................IDLIHSFRDYLHYHIKCSKVYLHTRMRAKTTDFLKVLNRARPEVKGEKKTFH 294
6 -4.360[S] COG4711 Predicted membrane protein  ali follow..  15  221...GFSDQKKRRQQKGIFQRPLSETTISYLVSLLASALMLLFFQKVTFADPWRMWLEHTLV.......... 278
7 -4.350[S] KOG4474 Uncharacterized conserved protein  ali follow..  15  180...........ELNSIFLHIRSLMKLTAFRVTVILNIITLVVFR........................... 219
8 -4.190[U] KOG4490 Translocon-associated complex TRAP, gamma subunit  ali follow..  26  130.............DYEATTFSIFYNNTLFLV--VVIVASFFILKN.......................... 159
9 -4.120[L] COG3676 Transposase and inactivated derivatives  ali follow..  18  191...............................KSFPLFLKECEFRFNFGTPSQQLKILRDWCGI........ 222
10 -3.940[S] COG2926 Uncharacterized protein conserved in bacteria  ali follow..  20  29IVDNEKKIRDNQKR-----VLLLDNLSEYIKPGMSIEEVQAIIANMRGDYEDRVIIKNADLSKERRELSKK 97

FFAS is supported by the NIH grant R01-GM087218-01
1 2 6 4 6 7   jobs submitted since Jan 1, 2011
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Rodrigues AP, Grant BJ, Godzik A, Friedberg I. The 2006 automated function prediction meeting. BMC Bioinformatics. 2007 May 22;8 Suppl 4:S1-4.