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Query: gi|60681605|ref|YP_211749.1| hypothetical protein (BF2124) [Bacteroides fragilis NCTC 9343] (Range: 1-361), from B.fragilis

Results of FFAS03 search in VFDB
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MKPEKTAPVLAITPNEQIFLPKCYHRIQDICAVIYDQLTEIYKEKNYQDLYHTESILDGSETGMDELNKNKIHAIDWLTWNNKNKDLELILTKHIILSITSDFINFVFESLYCAKRGKITVAYALIRKPFTDELLILEQLLYNRSDFIYRFFHSDTVETYDPSSKNINKVDVIKNAVDCLTNPLFDADFVHDLRYNKLCEYGINGISNHALHIVTKNKNYRTEPQNFNFVFSQEEDFALYYKQYYWVVPYILIYAVDIIDKLIFSILKDTDNQNLSIVKRLRRTIGFSLFTESYLRTKKDSIFILFNKKIRFTCPICKNKYFLKRDDYEFFFETEAILCPKCNNDNLTIENIQKIKNIIGLLast
1 -7.570[KL] KOG2487 RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, subunit TFB4  ali follow..  1.................................................MDEFQTLKQNASWDISEDANDTPSLLVVILDAN-PASWYSLSKKVPVSKVLADITVFLNAHLAFHHDNRVAVLAS------SDKVEYLYPSIAPEQKVAEVDPTKEANTYRKFREVDDLVLSGMKRLMSSTDKVSRKTMISGALSRALAYINQVQNKNTLRSRIFSLTGDVALQYIPTNCIFCAQKKNIPINVCNIEGGTLFLEQAADATGGIYLKVDNPKQYLMMSLFPDQNLRKHLNTPNQANVDFRATCFCHKKVLDIGFVCSVC-----------LSIFCEPRVHCSTCHTKFTVEPMSKKL...... 295
2 -7.560[K] COG1996 DNA-directed RNA polymerase, subunit RPC10 (contains C4-type Zn-finger)  ali follow..  14  3....................................................................................................................................................................................................................................................................................................................EAIYRCAKCGREVKIDLSV------TRDLRCPYCGSKILYKPRPKVPRRVKAI 49
3 -7.440[R] KOG4582 Uncharacterized conserved protein, contains ZZ-type Zn-finger  ali follow..  1...........................................................................................................................................................................MPEKLLKITYQGAGPQKKIN--AYLRMPSQNYTILRREIELYLFQERQLPKCDVRTFWIDADKDE--------------IEIVNQNDYEIFLAKCESNMHVQVAPLAPVEEPKATKQEGSSANAEAPSVDDPSNFTIHDAVECDGCGLA--LIGFRYKCVQCSNYDLCQKCELAHKHPEHMLRMPT.... 170
4 -7.430[K] KOG3507 DNA-directed RNA polymerase, subunit RPB7.0  ali follow..  12  2........................................................................................................................................................................................................................................................................................................DTQKDVQPPKQQPMIYICGECHTENEIKSRDP--------IRCRECGYRIMYKKRTKRLVVF... 55
5 -7.280[J] COG2888 Predicted Zn-ribbon RNA-binding protein with a function in translation  ali follow..  12  1..........................................................................................................................................................................................................................................................................................................MSVKLSIREEVEPPICSSCGKIIHPREKGV-------EFYCPNCGEVL............... 41
6 -6.890[S] COG5349 Uncharacterized protein conserved in bacteria  ali follow..  17  1.....................................................................................................................................................................................................................................................................................................MADASYPNAPTPIRAGLKCCCPRCGE------GKLFQGFLKLAPACDQCGLD................ 46
7 -6.820[R] COG5595 Zn-ribbon-containing, possibly nucleic-acid-binding protein  ali follow..  12  3.................................................LIETYFRLTALENNIESQSRLLNAVIDQWRYNGQ---------------IIGREIPLYLAEEDGAQGFAMRVIC-----PEQDSL---------FPQNNNAEVNRALQEAEKCGVIFDGFQLVGDDFNSDQTAENASPAWQ--VLYTTHLQSCSPIHSGENFAPIPLYKQLKNQPHLTQDLIK--------WQENWQACDQLQMNGAVLEQQSLAEISDHQSTLSKYLAQEIEKETGIPTYYYLYRVGGQS-----LKSEKSRCCPSCGANWALKDAIFDTF----HFKCDTCRLVSNLS............ 257
8 -6.810[O] KOG0826 Predicted E3 ubiquitin ligase involved in peroxisome organization  ali follow..  10  2..........................................................AEAANVRQNLQNVPSIFEISASETLDNLIYPALSK-----IFDYFGLRLDFKLWGSLRIQEELSPLL------TWLLQYLYLRKRASSFGESFYGLQRTVTTTGDLLNRRQQ-VERKLRTRITRHEDTSPWEQRLLSAFHAFHAAKAAHTFFYLV-ASNHSPIFRLLGLTLRYPSEPPKEDQWTYVVLKMLEVLAFFLQFVQWWYSNDQRRKVGGTLINPEA--------------MPRKQLPKEVQQSLPQRGECPVCLLSIQ----TPTACSVSGYVFCWKCHGTCPVTHYPISLDDLVRI 294
9 -6.760[K] KOG2907 RNA polymerase I transcription factor TFIIS, subunit A12.2/RPA12  ali follow..  20  79..................................................................................................................................................................................................................................................................................................................GATIKEKCPQCGNEEMNYHTLQLRSADEGAYTCTSCGYKFRTNN........... 125
10 -6.650[L] COG3677 Transposase and inactivated derivatives  ali follow..  13  4......................................................................................................................................................................................................................................................................................................................HCHCPQCGHGNVVKNGFVKD---KQRFKCKSCQYQFTNGMSMNATAKLLGV 72

FFAS is supported by the NIH grant R01-GM087218-01
1 2 6 4 6 7   jobs submitted since Jan 1, 2011
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Rodrigues AP, Grant BJ, Godzik A, Friedberg I. The 2006 automated function prediction meeting. BMC Bioinformatics. 2007 May 22;8 Suppl 4:S1-4.