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Query: gi|60683330|ref|YP_213474.1| ATP-dependent protease ATP-binding subunit ClpX (BF3893) [Bacteroides fragilis NCTC 9343] (Range: 1-415), from B.fragilis

Results of FFAS03 search in VFDB
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MAESKNNKKRCSFCGRSENEVGFLITGMNGYICDSCATQAYEITQEAMGAGKQSAGATRLNLKELPKPVEIKNFLDQYVIGQDDAKRFLAVSVYNHYKRLLQKDSGDDVEIEKSNIIMVGSTGTGKTLLARTIAKLLHVPFTIVDATVLTEAGYVGEDIESILTRLLQVADYNVPEAEQGIVFIDEIDKIARKGDNPSITRDVSGEGVQQGLLKLLEGSVVNVPPQGGRKHPDQKMIPVNTKNILFICGGAFDGIEKKIAQRLNTHVVGYNASRKTATIDKNNMMQYIAPQDLKSFGLIPEIIGRLPVLTYLNPLDRNALRAILTEPKNSIIKQYIKLFEMDGVKLTFQPEVYEYIVDKAVEYKLGARGLRSIVETIMMDVMFEIPSEDQKEYEVTLDYAKHQLEKANLARLQTALast
1 -95.700[O] COG1219 ATP-dependent protease Clp, ATPase subunit  ali follow..  52  7.GEDNGKLLYCSFCGKSQHEVRKLIAGPSVFICDECVDLC-----NDIIREEVQEAQAESSGHKLPAPKEIRTILDQYVIGQERAKKVLAVAVYNHYKRLNQRDKKDDIELGKSNILMIGPTGSGKTLLAETLARLLNVPFTIADATTLTEAGYVGEDVENIIQKLLQKCDYDVEKAQMGIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTVASVPPQGGRKHPQQEFLQVDTRNILFICGGAFAGLERVIQNRSARGGIGFNAESQEMGKKVGEAFKEVEPEDLVKFGLIPEFVGRLPVIATLDELDEAALMQILTEPKNALTKQYAKLFEMEGVDLEFRPDALKAVARKALERKTGARGLRSILEGILLDTMYEIPSQDVSKVVIDESVIDGSSQPLMIYENSEK 418
2 -76.500[O] COG1220 ATP-dependent protease HslVU (ClpYQ), ATPase subunit  ali follow..  26  5..................................................................TPREIVSELDKHIIGQDNAKRSVAIALRNRWRRMQLNEELRH-EVTPKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVGKEVDSIIRDLTDAAVKMVRVQAIEKNRYRAEELAEERTSQLQSMFQNLGGQKQKARKLKIKDAMKLLIEEEAAKLVNPEELKQDAIDAVEQHGIVFIDEIDKICKRGESSGPDVSRKHGMVKTDHILFIASGAFQIAKPSDLIPELQGRLPIRVELQALTTSDFERILTEPNASITVQYKALMATEGVNIEFTDSGIKRIAEAAWQENIGARRLHTVLERLMEEISYDASDLSGQNITIDADYVSKHLDALVADED... 437
3 -40.200[O] COG0542 ATPases with chaperone activity, ATP-binding subunit  ali follow..  17  528.....................................YRVTDEEIAEVLSRATGIPVAKMMEGEKEKLLRMEEELHKRVIGQHEAIEAVSNAIRRSRAGL------SDPNRPIGSFLFLGPTGVGKTELCKTLANFL-----FDDENAMVRIDMSEFMEKHSVSRL-----------------VGAPPGYVGYEEGGYLTEAVRRRPYSVILLDEVEKAHHDVFNILLQVLDDGRLTDGQGRTVDFRNTVVIMTSNLGSHLIQENSTLDYPS-------------MKELVMSVVGQHFRPEFINRIDETVVFHPLGKENIREIATIQ----LARLIKRMESHGYQLHFTDACLDFIGEVGYDPVYGARPLKRAIQQEIENPLAQLSGKLLPNQLVTIDYVDGKV........... 851
4 -33.800[O] KOG1051 Chaperone HSP104 and related ATP-dependent Clp proteases  ali follow..  14  545.....................................DVVGPDQINEIVARWTGIPVTRLKTTEKERLLNMEKVLSKQVIGQNEAVTAVANAIRLSRAGL------SDPNQPIASFLFCGPSGTGKTLLTKALASFM-----FDDENAMIRIDMSEYMEKHSVSRL-----------------IGAPPGYVGHEAGGQLTEQLRRRPYSVILFDEIEKAAPEVLTVLLQVLDDGRITSGQGQVVDAKNAVIIMTSNLGAEYLTTDNESDDGKIDSTTRE---------MVMNSIRGFFRPEFLNRISSIVIFNRLRRVDIRNIVENRILEVQKRLQS--NHRSIKIEVSDEAKDLLGSAGYSPAYGARPLNRVIQNQVLNPMAVLNGQLRDKETAHVVVQNGKIFVKPNHEANAN 885
5 -26.600[R] KOG2170 ATPase of the AAA+ superfamily  ali follow..  11  65..................................................................NYHTLDADIANLLFGQHLVKDVVVNSIKSHWYNENPRKPLV--------LSFHGYTGSGKNYVAEIIANNTF------------RLGLRSTFVQHIVATNDFPDKNKLEEYQVEL--------------RNRILTTVQKCQRSIFIFDEADKLPEQLLGAIKPFLDYYSTISVDFRRSIFILLS--KGGGEIARITKEQYESGYPREQLRLEAFERELMNFSYNEKGGLQMSELISNHLIDHFVPFLPLQREHVRSCVGAYLRKRGRG----------DLVSNVDFVERVLNSKAFSSSGCKRVDAKTDLEMAKIRPLLSSVHFDDEL..................... 356
6 -23.300[L] COG2255 Holliday junction resolvasome, helicase subunit  ali follow..  18  24..................................................................RPKLLTE-----YVGQPHVREQMEIFIQAAKQR----------GDALDHVLIFGPPGLGKTTLANIIANEMGVNLRTTSGPVLEKAGDLAAMLTNL--------------EPHDVLFIDEIHRL--------------SPVVEEILYPAMEDYQLDI---MIGEGPAARSIKLDLPPFTLIGATT-------------------------------------------AGSLTSPLRDRFGIVQRLEFYQVADLEHIVSRSAKCL-------------GLELTPEGAHQLARRS---RGTPRITNRLLRRVRD.................................... 232
7 -17.000[L] COG2256 ATPase related to the helicase subunit of the Holliday junction resolvase  ali follow..  18  22..................................................................RPQTVEQ-----YIGQQHILKPLRRALEAGH---------------IHSMILWGPPGTGKTTLAEVAANYANAEVERVSAVTSGVKE---------IRAAIEKARENKLSGRRTILFVDEVHRF--------------NKSQQDAFLPHIEDGTVTF-----------------------------------------------------------------ATTENPSFELNNALLSRA-RVYKLTSLNQQEILQAL----HQAIADTERGLGKVAAVF--ADNVLDRLAELV---NGDARMSLNYLELLYD-----AREDDQGRKQIDLPLLAEVAGEKVSRFDNKG 253
8 -16.000[O] COG1222 ATP-dependent 26S proteasome regulatory subunit  ali follow..  16  150..............................................................................IGGLERQIEELNEAIVLSLTHPERFEKLN---KPPKGVLMYGPPGTGKTLMARACASKTNATFLKLAGPQLVQM-YIGDG-ARLVRDAFALA----KERKPTIIFIDEIDAIGAKRSDSDQTGDREVQRTMLELLNQLDG------------------FSSSEEVKIIAATNRVDILDPALLR------------------------------------------GRLDRKIEFPLPNTLGRKRILQIHARKMLARSTEGFNGAQCKAVCVEAGMAALRKE--KTEISQNDFMDGIQEVLSRKKSKL.............................. 397
9 -15.800[R] COG2607 Predicted ATPase (AAA+ superfamily)  ali follow..  16  58............................................................................VRLAGVGRQTELLVRNTEQFIVG-----------RPANNVLMSGARGTGKSSLVKALLHEYADKGL-----RLIEV------DKSDLIGLPYLLTLLKECPEKFIVFCDDLS--------------ESGDETYKALKTALDGG-----------------LSQRCANVLVYATSNRRHL----------------PEYFDENAGTTGMRGEIHQKEAVEEKIS--LSDRFGLWLSFYPFDQNDYLAAVQN--------------LEDFGVPYDETAQMAALQWAQTRSRSGRSAWQFACDWA..................................... 278
10 -15.700[O] KOG0651 26S proteasome regulatory complex, ATPase RPT4  ali follow..  19  152..............................................................................VGGLAEQIRELREVVELPLINPELFKRVG---TPPKGCLLFGPPGTGKTLLARAVASQLDCNFLKVVSSAIVDK-YIGES-ARMIREMFNYA----RDHQPCIVFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQLDGFD-------------------SLGKVKVIMA--------------------------------------TNRPDTLDPALLRP--GRLDRKIEIGLPNEQSRLEILKIHSNKIVVKLSDGFSAADLRNVCTEAGMFAIRAEFVIDEDFMKAVRKVGDAKRLETKLDYKP............................ 405
11 -15.600[O] KOG0728 26S proteasome regulatory complex, ATPase RPT6  ali follow..  18  150..............................................................................VGGLDKQIKEIKEVIELPVKHPELFDALG---AQPKGVLLYGPPGTGKTLLARAVAHHTECTFIRVSGSELVQK-FIGEG-SRMVRELFVMA----REHAPSIIFMDEIDSIGSSRIESGSGGDSEVQRTMLELLNQLDG------------------FEATKNIKVIMATNRIDILDPALLR------------------------------------------GRIDRKIEFPPPNEEARLDILKIHSRKMIAELMPGASGAEVKGVCTEAGMYALRERRVTQEDFEMAVAKVMQKDSEKNMSIKK............................. 402
12 -15.100[L] KOG0991 Replication factor C, subunit RFC2  ali follow..  15  43..................................................................RPVKLNE-----IVGNEDTVSRLEVFAREG---------------NVPNIIIAGPPGTGKTTSILCLARALLGPALKDAMLELNASNDRGIDVVRNKIKMFAQQKVTLPKGRHKIIILDEADSMT--------------DGAQQALRRTMEIYSKTTRFALACNASDKIIEPIQSRCAVL--------------TKLTDAQILTRLMNVIEKERVPYTDDGLEAIIFTAQGDMRQALNNLQSTFSGGFINSENVFKVCDEPHPLLVKEMIQHCVNANIDEAY--KILAHLWHLGYSPEDIIGNIFRVCKTFQ..................................... 307
13 -15.100[L] KOG2028 ATPase related to the helicase subunit of the Holliday junction resolvase  ali follow..  20  108..................................................................RPRTLDD-----VVGQDHLLSLLRSAVESNR---------------LPSIVFWGPPGTGKTSIAKSLINSSKDP----SLYRFVSLSAVTSGVKD-VRDAVESAKRLNLEGKRTVLFMDEVHRF--------------NKSQQDTFLPVIEDGSILF--------------------------------------------IGATTENP-------------------SFHLITPLLSRC-RVLTLNPLKPNHVETLLR-------RAVDDSERGLPNSVEVDDSVIEFLANNC---DGDARVALNALEISAT.................................... 311
14 -14.700[O] KOG0652 26S proteasome regulatory complex, ATPase RPT5  ali follow..  16  173..............................................................................IGGLEKQIQELVEAIVLPMTHKERFEKLG---RPPKGVLLYGPPGTGKTLMARACAAQTNATFLKLAGPQLVQM-FIGDG-AKLVRDAFQLA----KEKAPCIIFIDEIDAIGTKRFDSEVSGDREVQRTMLELLNQLDG------------------FSSDERIKVIAATNRADILDPALMR------------------------------------------GRLDRKIEFPHPTEEARARILQIHSRKMLARSTDDFNGAQLKAVCVEAGMLALRRD--ATEVNHEDFNEGIIQVQAKKKASL.............................. 420
15 -14.700[O] KOG0727 26S proteasome regulatory complex, ATPase RPT3  ali follow..  16  157..............................................................................IGGCDIQKQEIREAVELPLTHHELYKQIG---DPPRGVLLYGPPGTGKTMLAKAVANHTTAAFIRVVGSEFVQK-YLGEG-PRMVRDVFRLA----KENAPAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDG------------------FDQTVNVKVIMATNRADTLDPALLR------------------------------------------GRLDRKIEFPLPDRRQKRLVFQVCTSKMYVSRPDKISAAEIAAICQEAGMHAVRKN--RYVILPKDFEKGYRANVKKPDTDF.............................. 404
16 -14.600[K] COG1224 DNA helicase TIP49, TBP-interacting protein  ali follow..  14  33........................................................................KDVADGLVGQKRAREAAGVIV----------RLIKSGKMAGRGILMAGPPGTGKTAIAVAISKELDIPFVQVSASEFYSAEM--KKTEALIQAMRKAIG--VRIRETRTVLEGEVVGLDYNMVPNPYNPTQKIPESATLTLATKDEKRTFSVGGRLAMQFFTQGIEVGDVIVIDKETGRIGKLDNEVREAVDEQVKRLVEEGRAELVPGVLFIDETHLMDIELFAFM-DLLDRL-LIITTEPYSREEIKTIIE-------------IRAAESGIMLSNEAMEKLTDIGEK-----TSLRYAVQLL---APAYEFAKMRNSGKVELEDVERSQSSAYLKKWEEK 445
17 -14.400[O] KOG0739 AAA+-type ATPase  ali follow..  17  129..............................................................................VAGLEGAKEALKEAV------IKFPHLFTGKRTPWRGILLFGPPGTGKSYLAKAVAEANNSTFFSVSSSDLMS--WLGES-EKLVKNLFELA----RQHKPSIIFIDEVDSLCGSRNEN---ESEAARRIKTEFLVQMQGVGNN-----------------NDGTLVLGATNIPWVLDSAIRRRFEKRIY------------------------------LPEEAARAQMFRLHHNLTDANIHELARKTEG---------YSGADISIIVRDSLMQPVRK......................................................... 348
18 -14.400[O] KOG0726 26S proteasome regulatory complex, ATPase RPT2  ali follow..  18  186..............................................................................IGGLDTQIQEIKESVELPLTHPEYYEEMG---KPPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVGSELIQK-YLGDG-PKLVRELFRVA----EEHAPSIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDG------------------FDSRGDVKVIMATNRIETLDPALIR------------------------------------------GRIDRKIEFPLPDEKTKRRIFTIHTSRMLIMAKDDLSGADIKAICTEAGLMALRER--RMKVTNEDFKKSKESVLYRKKEGTP............................. 434
19 -14.400[O] KOG0737 AAA+-type ATPase  ali follow..  18  416..............................................................................IGSLDETKESLQELVMLPLRR------KGGLLKPCRGILLFGPPGTGKTMMAKAIANEAGASFINVSMSTITS-KWFGED-EKNVRALFTLA----AKVSPTIIFVDEVDSMLGQRTRVGEHEAMRK--IKNEFMTHWDG-----------------LMSNAGDRILVLAA----DLDEAIIRRFERRIM------------------------------LPSVESRLRTLLSKEKTENLDFQELAQMTDG------------------YSGSDLKNFCTTA-----AYRPVRELIKQ....................................... 639
20 -14.400[L] KOG0990 Replication factor C, subunit RFC5  ali follow..  12  46..................................................................RPQSLDD-----VAAHRDIIDTIDRLTNEN---------------KLPHLLLYGPPGTGKTSTILAVARKLYGPKYRNMILELNASDDRGIDVRQQIQDFASTQSFSLGKSSVKLVLLDEADAMT--------------KDAQFALRRVIEKYTKSTRFALIGNHVNKIIPALQSRCTRF--------------APLDGVHMSQRLKHVIEAERLVVSDCGLAALVRLSNGDMRKALNILQSTHMAKQITEEDVYLCTGNPLPKDIEQISHWLLNKPF-----DECYKDVSEIKTRKGLAIVDIVKEITLFIFKIKM................................ 321
21 -14.300[R] COG1223 Predicted ATPase (AAA+ superfamily)  ali follow..  21  107..............................................................................VVGQEEAKRKAKVIL-----EYLRNPEKFGKWAPKN-VLFYGPPGTGKTMMAKALSNEAKTPFLSVKSTKLIGE-HVGDGARR-VHELYERA----RQLAPCIVFLDEFDAIALDRGYQEIRGD--VSEIVNALLTELDGTN-------------------SNEGICTIAA--------------------------------------TNRVELLD----ASIRSRFEEEIEFRLPSYEERLEILRRNLEEFVAAASEGFSGRDLVEKVIKASLHKAIAEG-KDKIETEDLLTAAEKVK..................................... 340
22 -14.100[L] COG0470 ATPase involved in DNA replication  ali follow..  13  1...............................................MSTSTEKRSKENLPWVEKYRPETLDE-----VYGQNEVITTVRKFVDEG---------------KLPHLLFYGPPGTGKTSTIVALAREIYGKNYSNMVLELNASDDRGIDVRNQIKDFASTRQ--IFSKGFKLIILDEADAMT--------------NAAQNALRRVIERYTKNTRFCVLANYAHKLTPALLSRCTRF--------------QPLPQEAIERRIANVLVHEKLKLSPNAEKALIELSNGDMRRVLNVLQSCKATDEISDDVIYECCGAPRPSDLKAVLKSILEDDW-----GTAHYTLNKVRSAKGLALIDLIEGIVKILEDYE................................. 289
23 -13.500[H] COG1239 Mg-chelatase subunit ChlI  ali follow..  15  32....................................................QRRLVQDEVRDNLTRKLRSGEELFPGVVGYDDTVIPQLVNA-----------------LARQNFILLGLRGQAKSRILRAITELLDPEVPVIDGVDMTVADLIGDDPIKAARLGTSLGDGLLPRANRGIFAVNELADLSPK--------------VQVALFNILQEGDVQI---------KGYPIRLELDVMLVFSA---------------------------------------NPEDYTARGIVTPLKDRIGSEIRTHPTDVQLGMDITAQEAVFQAREDGRIDKLSGVSQRLPISLMELACANAERRSLGDAPVYAGLPAITGKMELEYEGELKGADNVAKDLIRK............. 382
24 -13.200[O] KOG0729 26S proteasome regulatory complex, ATPase RPT1  ali follow..  19  177..............................................................................VGGCKEQIEKLREVVETPLLHPERFVNLG---EPPKGVLLFGPPGTGKTLCARAVANRTDACFIRVIGSELVQK-YVGEGAR-MVRELFEMA----RTKKACLIFFDEIDAIGGARFDDGAGGDNEVQRTMLELINQLDG----------------------------------------------------------DPRGNIKVLMATNRPDTLDPALMRP--GRLDRKIEFSLPDLEGRTHIFKIHARSMVERDIRFELLARLCPNSTGAEIRSVCTEA-----GMFAIRARRKIATEKDFLEAVNK........................... 415
25 -13.100[O] KOG0740 AAA+-type ATPase  ali follow..  18  381....................................................................PKMIELIMNEIMGVEFAKATIKEIV------MLRPDIFTGLRGPPKGILLFGPPGTGKTLIGKCIASQSGATFFSISASSLTS--WVGEG-EKMVRALFAVA----RCQQPAVIFIDEIDSLLSQRGDG---EHESSRRIKTEFLVQLDGATTS-----------------SEDRILVVGA----EIDEAARRRLVKR--------------------------------LPEASARKQIVINLCCLSEEEIEQIVQQSDA------------------FSGADMTQLCRGA-----SLGPIRSLQTADIATIT-QVRPIAYIDFENAFRTVRPSVSPKDLELYEN. 665
26 -12.600[O] COG0606 Predicted ATPase with chaperone activity  ali follow..  15  194..............................................................................IIGQQQGKRALEIAAAGNH-----------------NLLFLGPPGTGKTMLASRLCDLL--EMSDEEAMETARAPHHSSSMAALVGGGTIPRPGEISLAHNGLLFLDEMPEF--------------ERKVLDSLREPLESGEIVISRAQGKTRFPARFQLVGALN-----------------------PTGYYEGSQARANPQSILRYLSR--------LSGPLLDRFDMSIEIPALPKGTLAAAVRQRVWVARERMLARSGKVNALLPLLKADAEFLESALHRLGLSIRAYHRIIK--VARTIADLQGEA.......................... 479
27 -12.500[O] KOG0741 AAA+-type ATPase  ali follow..  23  220...............................................................................IGDKEFSDIFRRAFAFRVFPPEIVEQMG---IHVKGILLYGPPGCGKTLLARQIGKMLNAREPKVVNGPEILNKYVGES-EANIRKLFADAEEEQRRSGLHIIIFDEIDAICKQRGSMAGSTGVHDTVVNQ-LLSKIDGVE-------------------QLNNILVIGM--------------------------------------TNRPDLIDEALLRP--GRLEVKMEIGLPDEKGRLQILHIHTARMRGH----------QLLSADVDIKELAVETKN--SGA-ELEGLVRAAQSTAMNR............................... 455
28 -12.200[L] COG2812 DNA polymerase III, gamma/tau subunits  ali follow..  12  11..................................................................RPQKLQD-----VVGQEHITKTLQNALVQEKFS--------------HAYLFSGPRGTGKTSAAKIIAKAINKGITSGSIVDVMEIDAASNNGVDEIRDIRDHVKFAPSEVRYKVYIIDEVHMLTTGA---------------NALLKTLEEPPSHAIFILATTEPHKIPLTIISRCQRF--------------KRISNDALVGRMKEILTHEGIEAEDEALVLVARAAEGGMRDSLSLLDQAISFERVTVEDVLAITGAVSHEVLTQVVESAQKGETAEAL--QLVNQLLANGKDPLRFVEDLIYYYRDLM..................................... 293
29 -12.200[R] COG0714 MoxR-like ATPases  ali follow..  16  6....................................................................SVLTQNLSQTIVGKDEAIRLVLVAL-----------------LSGGHALLEDVPGVGKTLLAKSLARSINGKFQRVQCTPLLPTDITGTNIWNPSSREFEFLPGPA----ANILLADEINRATPR--------------TQAALLEVMEEKQVTVDGETRLV--PHPFFVIATQN--IEYQGTFPLPEAQLDRFALSLSLGYPSEAEELKMLQRQQNPEAIAVGDLESCISLEEVEALQKAVKLTEDLQQYLLRLVRASRTALQRATQAFAFLEERDYAIDDDVKFVAPHVLAHRLIPASGKKAILQRLLDSV.................................. 301
30 -12.100[O] KOG0733 Nuclear AAA ATPase (VCP subfamily)  ali follow..  20  176..............................................................................IGGLDDCINELLELVAMPIKHPEVYQYTG---HPPRGVLLHGPPGCGKTMLANALANELGVPFISISAPSIVSG-MSGES-EKKVREVFEEA----KSLAPCLMFIDEIDAVTPKRESAQREMERR---IVAQFLTCMDEL---------------SFEKTDGKPVLVIGA--------------------------------------TNRPDSLDSALRRA--GRFDREICLTVPSQDAREKILRTMAKGL-----------------GDFDFRQLAKQT----VGA-DLKALTAAAGIIAIKRIFNE........................... 403
31 -11.800[T] COG2766 Putative Ser protein kinase  ali follow..  12  76............................................................................EEFYGMEDAIEQIVSYLKHAAQGL---------EEKKQILYLLGPVGGGKSSLAERLKSLMQ-PLCLFNPQEDAQI--PGDENNQDISALVGKVDGALCRANQGIMEFVEMFKA--------------PIKVLHPLLTATQEGNYNG---------TEGISALPFNGIILAHS------------------------------------NESEWVTFRNNKNNEAFLDRVYIVKVPYCLRISEEIKIYE----------KLLNHSELAHAPCAPGTLETLSRFSILSRLKEPENSSIYSKM...................................... 385
32 -11.600[O] KOG2004 Mitochondrial ATP-dependent protease PIM1/LON  ali follow..  21  463.............................................................SPENRRLSVAKKALDEGHYGMKDVKERI-IAVNLLRKSIGGK------------LCFHGPPGVGKTSIAKSIATALNREYFMTDVAEI-RRTYVGAMPGKMIQCMKKVKTEN-------LVLIDEVDKIGGAGFHGD----------ASALLELLD------PEQNANFNDHFLDVPVDLSRVLFICTANEISK------------------------------------------IPGPLRDRME-MIDVSGYLAEEKVEI---AHQHLIPQLRKDTSLATEQLKIEDSALEELIKH-YCRESGVRNLQQHIERIFRKAALQIAEQQNEDEEPAEKATTAITENSEAEPITST 747
33 -11.600[O] KOG0736 Peroxisome assembly factor 2 containing the AAA+-type ATPase domain  ali follow..  22  659..........................................TAKEDFTKALDRSKKRNASALGAPKVPNVK----DDVGGLEDVKTSILDTVQ-----LLHKDLFSSGLRKRSGVLLYGPPGTGKTLLAKAVATECSLNFLSVKGPELINM-YIGES-EKNVRDIFEKA----RSARPCVIFFDELDSLAPARGASGDSGGVMDRVVSQ-MLAEIDG------------------LSDSSQDLFIIGA--------------------------------------SNRPDLIDPALLRP--GRFDKLLYVGNADASYRERVLKALTR---------------KFKLSEDVLYSVAKKCPSTFTGA-DMYALCADAWFQAAKR............................... 915
34 -11.600[KT] COG1221 Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain  ali follow..  16  196........................................................SLRHNTHDATRNALRTRYVLGDMLGQSPQMEQVRQTILL-------------YARSSAAVLIEGETGTGKELAAQAIQGKKSHPFVAVNCGALLEAELFGYEEGAFTGSRRGGRAGLFEIAHGGTLFLDEIGEMP---------------PLQTRLLRVLE---------------EKEVTRVGGHQPVPVDVRVISATHCNLEEDMRQGQ------------------------------FRRDLFYRLSILLQLPPLREADILPLAESFLKVSLAALSAPFS--AALRQGLQASETVLVHYDWPGNI--RELRNMMERLA..................................... 459
35 -11.300[LO] COG1474 Cdc6-related protein, AAA superfamily ATPase  ali follow..  15  36........................................................................SYTPDLLLHRNEQINSLATILVSALRG------------TPSNVLIYGKTGTGKTAVTRYVGKELFCSVVYINCEVIDTQYRLGWPTDQVFMKFKEAID---ARDQVIIIILDEIDKLIKKG--------------DDVLYNLSR-------------------TDLRKAKVSMIGVSNDLKFTEFLDPRVKSS----------------------------------------EEELIFPPYDAEQISDILKQRAKMAYND------------VLGEMVIPLCAAFAAQEHGDARRALDLLRVSGE-------AERENQPQVLEEHVRRAQEKIEIDRVVEV 302
36 -11.300[KT] COG3604 Transcriptional regulator containing GAF, AAA-type ATPase, and DNA binding domains  ali follow..  19  192............................................................................VEIIGNSGPMLAMKADI-------------DVVAPSQFNILIHGETGVGKELVARTISNRKRQPLVYVNCAALLESELFGH-VKGAFTGADRARMGKFALADGGTLFLDEIGELP---------------SAQSKILRALQ---------------NHEIQPVGQDRVQTVDVRILAATNRDLKKEVEAGR------------------------------FRADLYHRLSVYIYVPPLREGDLSLLA----GYFVEQARRKLGIT---LKLHGDVLSQLIQYPWPGNV--RELEHVINRAA..................................... 422
37 -11.300[O] COG0466 ATP-dependent Lon protease, bacterial type  ali follow..  20  306..........................................................VTEEKKSIDIDEARRVLESNHNGLEKVKERIILAVMKLKKEKQGS------------LLLTGPPGTGKTSLGKSIADALGREYVVRDEAEI-RRTYIGALPGRIIQGMRKAGTKN-------VFILDEVDKLSTSYAGD-----------ASALLEVLD------PEQNNTFSDHYLEVPYDLSEVFFIATANSLA------------------------------------------SIPWPLLDRME-TIEISGYTKNEKLAIA---KDHLLPCILEEHGLDADKLKIEDEALKGIIDK-YTREAGVRGLKKQLARTARFVSEKVSGKTDLPYVVRADMLKE............. 580
38 -11.000[KT] COG4650 Sigma54-dependent transcription regulator containing an AAA-type ATPase domain and a DNA-binding domain  ali follow..  15  165.........................................................NAIASRFAEERQQTLDFLKSGIATRNPHFNRMIEQIEK-------------AIKSRAPILLNGPTGAGKSFLARRIRHQFSGAFVEVNCATTAMSTLFGH-VKGAFTGARESREGLLRSANGGMLFLDEIGELG---------------DEQAMLLKAIE---------------EKTFYPFGSDRQVSSDFQLIAGTVRDLRQLVAEGK------------------------------FREDLYARINLWFTLPGLRQEDIEPNL----DYEVERHASLTGDSVRFNTEARRAWLAFATSPQATWRGFRELSASVTRMA..................................... 423
39 -10.900[L] KOG1942 DNA helicase, TBP-interacting protein  ali follow..  16  36........................................................................IKLAAGFVGQLEAREAAGLVV----------DMIKQKKMAGKALLLAGPPGTGKTALALGISQELKVPFCPMVGSEVYSSEV---KKTEVLMENFRRA--GLRIKETKEVYEGEVTELSPEETESLTGGYGKSISHVVITLKTVKGTHLKLDPTIYDALIKEKVAVGDVIYIEANSGAV-VGRSDAFATEFDLEAEEYVPLPKGEVHKKKEIVQDVTLQDLDAANARPQ--GGQDILSLMGQMMKPRKTEITDKLRQEINKVVNRYIDEGVAELVPGVLFIDEVHMLDME-----SYLNRALESSLSPIVIFATNRGVCNVRGTDMPSPHGVPIDLLDR.... 359
40 -10.900[O] KOG0730 AAA+-type ATPase  ali follow..  18  240............................................................................DDVGGVRKQMAQIRELVELPLRHPQLFKSIG---KPPKGILLYGPPGSGKTLIARAVANETGAFFFCINGPEIMSK-LAGES-ESNLRKAFEEA----EKNAPSIIFIDEIDSIAPKREKTNGEVERR---IVSQLLTLMDGLK-------------------SRAHVIVMGA--------------------------------------TNRPNSIDPALRRF--GRFDREIDIGVPDEIGRLEVLRIHTKNMISKDTHGYVGADLAALCTEAALQCIRE......................................................... 461
41 -10.800[S] COG4916 Uncharacterized protein containing a TIR (Toll-Interleukin 1-resistance) domain  ali follow..  13  8..................................................................................GDVFKTVGLPPYTYVKPKHFGEVRADISQVGKHLLIEGPSGIGKTCVVFKVFEELQW----SQGRDFTYVGCRDQNAEQIIDDFLKNAA-AGNALSPCVLVIDDFHLL--------------SQAKRMEIGSTLKRLS--------------DRAFEQAEPAKVILIGIPTAGVSLLS-------------------------------------DAYDLGPRLGS-YALTRASDVEIDKLISEGEQA---------------LAVLFEDRDVLLAE-------SAGNFWLAQYVCNKVCAIEEVYETQDDAKILTFDILGIRGRLMAELTQR 247
42 -10.800[O] COG0465 ATP-dependent Zn proteases  ali follow..  16  154..............................................................................VAGCDEAKEEVSELV--DYLREPSRFQKLGGKIPKG-VLMVGPPGTGKTLLAKAIAGEAKVPFFTISGSDFVEM-FVGVGASR-VRDMFEQA----KKAAPCIIFIDEIDAVGRQRGAGLGGGHDEREQTLNQMLVEMDGFEGNEGIIVIAATNRPDVLD-GREQILKVHMRRVPLDTDIDASVIARGTPGFSGADLANLVNEAALFAARGNKRVVSMVEFEKAKDKI--------MGAERRSMVMTEAQKESTAYHEAGHAIIGRLVPEHDP----VHKVTIIPRGRALGVTFFLQKLESQISTLYGGRLAEEIIYGPEKVSTGASNDIKVATSIA 500
43 -10.800[DL] KOG2035 Replication factor C, subunit RFC3  ali follow..  13  6...............................................................DKYRPKDLLG-----KDGVDYHIEQANHLKFLSADCM-------------PHLLFCGPSGAGKKTRIKCLLRELYGV--HIEMTPSDVGIYDRVVVQDLVKEMAQTSQIETSQRSFKVVVLCEADSLT--------------RDAQHGLRRTMEK----------------------ANNCKIVLSCESLS-------------------------------------------IIEPLQSRC-IIINVPAPTDEDVTKVL-----------RKVIERESFLL--PENVLQKIVEKS---EGNLRRAILMTEAL...................................... 235
44 -10.800[O] KOG0743 AAA+-type ATPase  ali follow..  14  712............................................................................ETLAMDPGAKKKIIDDMERFLKRREFYKRVGKA---KRGYLLYGPPGTGKSSLIAAMANYLKFDVFDLELSSIYE--------NAQLKSIL------LSTTNRSILVIEDIDCSSAEVVDREADEYQEYEEGYYGLLNFVDGL-----------------SSFGDERIIVFTTNHKERLD-------------------------------------------PALLGRMDMHINMSYCTGLGFRTLVGGLNHPLCEEIEALID----STEVTPAELAEELMQEDDTDVVLRGVVSFVENRKVEISKTKELEGSTCRKLDGDDKHNVSSTNDLKKTKKK 985
45 -10.700[O] COG0464 ATPases of the AAA+ class  ali follow..  18  489............................................................................EDVGGLERVKELLKEVVEWPLKNPESYRDIG---EAPKGVLLYGPPGTGKTLLAKAIAHESDANFITAKGSDLLS-KWYG-ESEKRIAEVFTRA----RQVAPSIIFLDELDSLAPIRGTSVGEPQVTARILNQ-LLSEMDGLE-------------------ELRAVVVIGA--------------------------------------TNRPDIIDPALLRP--GRFDELILVPVPDEGARREIFRVHTKNMLVSFTDQYTGADIAAVCKKAGRHALREDLHAKKVRQKHFLQAIEETGPSVTPD............................... 738
46 -10.600[KT] COG3829 Transcriptional regulator containing PAS, AAA-type ATPase, and DNA-binding domains  ali follow..  18  270............................................................................EQLVGECRVMRQLKRLISR-------------IAPSPSSVMVVGESGTGKEVVARAISGRRNKPFIAINCAALLESELFGYVKGAFTGASANGKTGLIQAANTGTLFLDEIGDM----------------MLQAKLLRAIE---------------AREILPIGASSPIQVDIRIISATNQNLAQFIAEGK------------------------------FREDLFYRLNVIITLPPLREEDIELLVHYFLHLHTRRLGSVYP------GIAPDVVEILRKHRWPGNL--RELSNLMEYLV..................................... 501
47 -10.600[KE] COG3283 Transcriptional regulator of aromatic amino acids metabolism  ali follow..  14  204............................................................................SQIIAVSAKMKHVVEQARK-------------LAMLSAPLLITGDTGTGKDLFAYACSPRSAKPYLALNCASIPED------ESELFGHAPEGKKGFFEQANGGSVLLDEIGEMS---------------RMQAKLLRFLN---------------DGTFRRVGEDHEIHVDVRVICATQKNLVELVQKGL------------------------------FREDLYYRLNVLLNLPPLRDQDIMPLTELFVARFADEQGVPRP------KLSADLSTVLTRYGWPGNV--RQLKNAIYRAL..................................... 427
48 -10.600[O] COG1066 Predicted ATP-dependent serine protease  ali follow..  12  1MAKAPKTAYVCNDCGAEFSR-----------QCAAC-NTISEVRLVSSSNSAKGDRFSGYAGETRAKIQTLAEITPRFSSGFHELDRVLGGGV-----------------VPGSAILIGGHPGAGKSTLLLQVMCGLMTALYVTGEESLQQVAMRAKRLGLPTDKLNMLSETSADQLKPQIIVIDSIQVMHLADIQSSPGSVAQVRECASFLTRYAKTRQVAIIMVG-HVTKDGTLAGPKVLEHCIDCSILLEGEADSRYRTLRSHKNRFGAVNEREVKNPSAIFLSRGEEQTPGSSVMVIWEGTRPLLVEIQALVDHSLLAVLHRHGGLQMSDQDVFVNVVGADLALLLALISSFRNRPLPQDFGEVGLAGEIRPVGQERIGEAAKHGFKRAIVPFANRPKSAV.......... 438
49 -10.500[F] KOG3347 Predicted nucleotide kinase/nuclear protein involved oxidative stress response  ali follow..  14  1..............................................................................................................MLLPNILLTGTPGVGKTTLGKELASKSGLKYI--NVGDLARYDGYDEEYDCPILDEDRVVDELDNQMREGGVIVDDTNVLYERLETRGYNEKKLTDNIQCEIFQVLYEEATASYKEEIVHQLPSNKPEELENNV........................................................................................................................................................................... 156
50 -10.300[T] COG2204 Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains  ali follow..  16  135............................................................................NAIVTRSPLMLRLLEQA-------------RMVAQSDVSVLINGQSGTGKEIFAQAISPRSNKPFVAINCGALLESELFGH-ARGAFTGAVSNREGLFQAAEGGTLFLDEIGDMP---------------PLQVKLLRVLQ---------------ERKVRPLGSNRDIDIDVRIISATHRDLPKAMARGE------------------------------FREDLYYRLNVVLKIPALAEEDIPLLANHLLRQSAQRHKPFVR------AFSTDAMKRLMTASWPGNV--RQLVNVIEQCV..................................... 365
51 -10.100[QK] COG3284 Transcriptional activator of acetoin/glycerol metabolism  ali follow..  19  330............................................................................RRLGGDAPVIAALQAKAAK-------------LARTRLPILIQGETGTGKEHLARAIGSGLEGPFVAINCAALIESELFGYLPGAFTGASAKGRKGLIEQADGGTLFLDEIGDM----------------ALQSRLLRVLA---------------EGEVLPVGGTAPRKVRIRIVSASHRPLQTLVSQGA------------------------------FREDLYYRLNAALTLPALDRPDFDWVL----EQLLKRHGD-------ELILSPAALSALKAHDWPGNI--RELDNVIGVAA..................................... 555
52 -9.960[K] KOG2680 DNA helicase TIP49, TBP-interacting protein  ali follow..  13  42..............................................................................MVGQVKARKAAGVIL----------QMIREGKIAGRAILIAGQPGTGKTAIAMGMAKSLGTPFAMIAGSEIFSLEMSKTEATQSFRKAIGVRIKEETEVIEGEVVEVQIDRSKSGKMTMKTTDMETVYDMGAKMIEALNKEKVQSGDVIAIDKATGKITKLG-DEVHMLDIECFSFLNRALENEMSPILVVATNRGVTTIRGTNQKSPH---------GIPIDLLDRL-LIITTQPYTDDDIRKILE-------------IRCQEEDVEMNEEAKQLLTLIGRD--TSLRYAIHLITAAA------LSCQKRKGKVVEVEDIQR............. 425
53 -9.570[O] KOG0731 AAA+-type ATPase containing the peptidase M41 domain  ali follow..  23  322..............................................................................VAGCDEAKQEIMEFV--HFLKNPKKYEDLGAKIPKG-ALLVGPPGTGKTLLAKATAGESGVPFLSISGSDFMEM-FVGVGPSR-VRHLFQEA----RQAAPSIIFIDEIDAIGRARGRGGLGGNDERESTLNQLLVEMDG---------------------TTAGVVVLAG--------------------------------------TNRPDILDKALLRP--GRFDRQITIDKPDIKGRDQIFKIYLKKILAALTPGFAGADIANVCNEAAL--IAARHEGATVTMAHFESAIDRVI..................................... 563
54 -9.430[L] COG1484 DNA replication protein  ali follow..  14  26.AESDASRYDCLRCKDQGGYLVRQNGLEVWTMCS-------------MAERKVKRLLGASEITHAFRQLGFKEFRTEGKPQAIKDAFECTKEYVADYEQIK--------DCRKNSIALLGQPGSGKTHLLTAAANELYVPVIYFPFVEGFTDLKNDFALLEAKLNRMKQAD---------VLFIDD---LFKPVNGKPRATDWQLEQMYSVLNYRYLNHKPILLSSELTIEGLVRVDEALGTKIYEMCSDYLVIIK............................................................................................................................................................... 252
55 -9.420[LD] KOG2227 Pre-initiation complex, subunit CDC6, AAA+ superfamily ATPase  ali follow..  13  120........................................................................SKAPSTILCREDEQIRIFEFVKGCIDQ------------KAGSLYICGCPGTGKSLSMEKVVQQVPVDTLSVNCTSLSKT-------TDIFSKILGEIKPGKNANTNSLIIADEMDYLITKD--------------RGVLYDLFMLT------------------TLPFSRCILIGVANAIDLADRFLPKLKSLNCK-------------------------------------PMVITFRAYSKDQILRILQERLRVLSYVA------------FQPKALELCARKVAAASGDMRKALCVCRSALE.................................... 359
56 -9.360[H] COG3172 Predicted ATPase/kinase involved in NAD metabolism  ali follow..  15  10..................................................................................................................TVAILGGESSGKSTLVNKLANIFNTTSAWEYGRDYVFSHLGGDEIALQYSDYDKIALGHAQYIDFKVAFIDT..................................................................................................................................................................................................................................... 87
57 -9.310[G] COG3265 Gluconate kinase  ali follow..  25  1..............................................................................................................MSGKCIIVMGVSGTGKSCVGQALALALGAKFIDGDQKMAAGQPLNDQDRAPWLERLSDVAYSLQQKNEVGFLVCSA..................................................................................................................................................................................................................................... 84
58 -9.260[L] COG1241 Predicted ATPase involved in replication control, Cdc46/Mcm family  ali follow..  12  248..............................................EKAEEEEVEVEPGVEFERLSQMKNMHHLIAPSIFGHDIVKRSIALLLVG---GNEVVMRNGSKIRGDINILLVGDPSTAKSQLLRYVLNAA----IATTGKGSSGVGLTAAVVLDKDTGEKRLEAGAMVLADRGVVCIDEFDKMSDGD--------------RVAIHEVMEQQTVTIAK-----------------------AGIHTTLNARCSVLAAANPIWGQYKESRPPQD--------------NVRLPESLLTRFDLIFVTLDKSNTDIDQLVSG-KQEVFRAYIRY--CRQKKPVLSREAAGLIAREYTSLRITPRMLETMIR------LATANAKLRLSDVVEYDDAECAVNLVKDSLFQKI 582
59 -9.260[V] COG3896 Chloramphenicol 3-O-phosphotransferase  ali follow..  16  2............................................................................................INPTRARRMRYRLAAMAGMPEGKLILLGGSSAGKTSLALAFQDLAAECWMHIGIDLFWFA....................................................................................................................................................................................................................................................................... 62
60 -9.190[DL] KOG1970 Checkpoint RAD17-RFC complex, RAD17/RAD24 component  ali follow..  12  93...............................................................DKYKPETQHE-----LAVHKKKIEEVET--------LKAQVLERQPKQGGSILLITGPPGCGKTTTLKILSKEHGIQVQEWINPVLPDFQKDDFKGMFNTESSFHMFLGDDLRTDKKIILVEDLPNQFYRDS----------HTLHEVLRKYVRIGRCP---------------------LIFIIS-------------------------------------DSLSGDNNQRLLFPKEIQEECSIISFNPVAPTIMMKFL----NRIVT--IEANKNGGKITVPDKTSLELLCQGC-----G--DIRSAINSL...................................... 340
61 -9.140[L] KOG0481 DNA replication licensing factor, MCM5 component  ali follow..  12  330....................................................................ERLSQSLAPSIFGSRDIKKAITCMLFG---GSRKRLPDGLCRRGDINVLLLGDPGTAKSQLLKFVEKVA----VYTSGKGSSAAGLTASVMKDPQTRNFVMEGGAMVLADGGVVCIDEFDKMREDD--------------RVAIHEAMEQQTISIAK-----------------------AGITTTLNSRCSVLAAANSIFGRWDDTKGEE---------------NIDFMPTILSRFDMIFIVKDIHDESRDITLAK-SLSTFKKY--HYCRTHCGPRLSEAAGEKLKSRYVLMRITVRQLEAVIR------ISESLAKIRLQPFATDEHVNEALRLFQVSTLDAA 651
62 -9.140[L] KOG1968 Replication factor C, subunit RFC1 (large subunit)  ali follow..  15  345.............................................ARMDDSNKKESQPSQIWTSKYAPTSLKD-----ICGNKGVVQKLQKWLQDYHKNRKSNFNKPGPD-LYKAVLLSGPPGIGKTTAAHLVAKLEGYDVLELNASDTRSKRLLDEQLFGVTDS--TKANPVDMAKSRLVLIMDEIDGMSSGDRGG------------GQLNMIIKKS-------------------------------------------------------------------------------------MIPIICICNDRAHPKLRPLDRTDANSMRSRIMSIAYREGLKL--SPQAVDQLVQGT------QSDMRQIINLL...................................... 584
63 -9.120[F] COG1936 Predicted nucleotide kinase (related to CMP and AMP kinases)  ali follow..  16  2..................................................................................................................LIAITGTPGVGKTTVAKLLAKKLNYEYV--SLKDFALEKGCGRRVNDEVEVEIDELAYFIERELKGVVLRAHPKLIGERLRERGYDREKIGENVEAELVDAVLIEAIEEHENVIEVDTTNKSPEDVVEEIV.......................................................................................................................................................................... 148
64 -9.080[L] KOG0482 DNA replication licensing factor, MCM7 component  ali follow..  15  334....................................................................ERLATSLAPEIYGHLDVKKALLLLLVGGVDKRPDGMKIRGN-----NICLMGDPGVAKSQLLGYISRLA----QYTTGRGSSGVGLTAAVMKDPLTGEMTLEGGALVLADQGVCCIDEFDKMADQD--------------RTAIHEVMEQQTISIAK-----------------------AGIMTTLNARVSILAAANPAFGRYNPRRTVEQ--------------NIQLPAALLSRFDLLWLIQDKPDRDNDLRLAK-DMNLMRRYINL--CKRKNPTIPDELTDYIVGAYVELRTSARNLLGILR------LSTALARLRLSDSVEKDDVAEALRLLEMSKDSLN 645
65 -9.050[F] COG1618 Predicted nucleotide kinase  ali follow..  16  2........................................................................................................RIEGKEKTMLRIAVTGSPGVGKSTVVAKTAEKLAEKPGFKIGGIRTAEIRKEGHREGFSIRDLATGKTGINALACDLVVIDEIGPM-----------ELISQSFVSAVEEVLESDKPVLHPLAQRFRKGFEVLTVDKGNRDELPEKITNRFLRKLG........................................................................................................................................................... 184
66 -9.010[O] KOG0734 AAA+-type ATPase containing the peptidase M41 domain  ali follow..  15  282............................................................................EHVKGVEEAKQELQEVV--EFLKNPQKFTILGGKLPKG-ILLVGPPGTGKTLLARAVAGEADVPFYYASGSEFDEM-FVGVGASR-IRNLFREA----KANAPCVIFIDELDSVGGKRIESPMHPY--SRQTINQLLAEMDGFKPNEGVIIIGATNFPEALD-GRTEILKWYLNKIKFDQSVDPEIIARGTVGFSGAELENLVNQAALKAAVDGKEMVTMKELEFSKDKI--------MGPERRSVEIDNKNKTITAYHESGHAIIAYYTKDAMP----INKATIMPRGPTLGHVSLLAQLLAQMDVSMGGRVAEELIFGTDHITTGASSDFDNATKIA 628

FFAS is supported by the NIH grant R01-GM087218-01
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Rodrigues AP, Grant BJ, Godzik A, Friedberg I. The 2006 automated function prediction meeting. BMC Bioinformatics. 2007 May 22;8 Suppl 4:S1-4.