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Query: gi|29345411|ref|NP_808914.1| hypothetical protein BT_0001 [Bacteroides thetaiotaomicron VPI-5482], from B.thetaiotaomicron

Results of FFAS03 search in CSGID
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MVSTSTHDDAFDFDFGYTGKLQFLVATVDANSTYYTKDPNGIECDNDGSSSSLTPFTHPTISNLTIVGTVNGKVAQSAMGDGKSMKSCANFRRNCQFTLVNSILYGYPTGILCETTNSYVFKNNVVNGVSTTFSGITADATNTAAASAEAIGLTSPWGGYTGLMPNASPANAGADFSELDSWFTTTSYRGAVGGRSNWLTQAWVKLast
1 -7.050IDP05443 hypothetical protein lmo0463 [Listeria monocytogenes EGD-e] lmo0463 [Listeria monocytogenes EGD-e]  ali follow..  16  23VVEVFISEDDLDVSE------ENIQEIPKKELAASSDKDNK---------QHMLPKAGDTVTNYTLLG......................................................................................................................................... 75
2 -6.190IDP90790 gene: leuD; isopropylmalate isomerase small subunit [Campylobacter jejuni subsp. jejuni NCTC 11168] Cj1716c [Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819]  ali follow..  17........ANIDTDQ-----KQFLLAVSKQGFGKHLFHDLRYLDDKESVLNMDFNLNKKEYQNSSILFENFGSGSSREHAPWALVDYGIRIAPSFADIFKNNALGNGLLTIELAKDEVLEIVDEL-----------KKSQDKNIEISLLEKRVFFKDKIFSFDLDDFHRICLLEGLDNIALTLKHEAQIKAYEKNSKSFLV.... 200
3 -5.970IDP05469 putative lipoprotein [Bacillus anthracis str. Ames] BA_2398 [Bacillus anthracis str. Ames]  ali follow..  12  34.....TTDTIYLIPEEYEGDLIVVYNVPGAELLPKEEEFSVVTFAADGTAVTSTKNMKFGTVNDLYY-NKEGQRTKIDSSCIHFSSTGSRTENSWEFPFANLEVTRTACSQEFSANGREVPENQ................................................................................. 153
4 -5.300IDP04067 thioredoxin [Bacillus anthracis str. Sterne] BAS4417 [Bacillus anthracis str. Sterne]  ali follow..  12  1MAIVNANDQSFDFWAPWCGPCKMIAPVLEEIDAELGEKVKVVKVDVDENQETARQFEVMSIPALFVLKDGKVVDQALGYKPKEALVELVS................................................................................................................... 101
5 -5.150IDP01056 gene: yrdA; putative ferripyochelin-binding protein STM3399 [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2]  ali follow..  12  48........DVNYVAIGARTNIQDGSVLHVTHKSSSNPHGNPLIIGEDVTVGHKVMLHGCTIGNRVLVGMGSIVLDGAIIEDDVMIGAGSLVPQHKRLE-SGYLYLGSPVKQ.............................................................................................. 149
6 -4.830IDP95281 acinetobactin biosynthesis protein [Acinetobacter baumannii ATCC 17978] YP_001085394 [Acinetobacter baumannii ATCC 17978]  ali follow..  31............WPEGVMGGISHKSCHAIAYVRNNTLKEKIFGIDIESQKHHIFFQKKDEFYDVFL----HKNEQEEIEKLLKDQAYLYLIIFSAKESIIKAFYLKYKQIIDFKNIK........................................................................................ 135
7 -4.820IDP05021 gene: rnfG; electron transport complex protein [Clostridium difficile 630] CD1139 [Peptoclostridium difficile 630]  ali follow..  16  92.............PSGYGGEIEVMV---------------GISSEGQVTGMSETAGLGAKAKDDAFKGQYKGKTAEPLEVAKGSTTADNQILAISGATITSTAVTT................................................................................................... 174
8 -4.670IDP91752 TIP_SHV2C [Herpesvirus saimiri (strain 488)]  ali follow..  17  53VIIQNSSEDELQNSKGFQGKLSSCSEETTAPSSSYSSKQASVFIEENGDNETSTYRPQNVLTNLNSL.......................................................................................................................................... 126
9 -4.480IDP90097 ZZZ_0013 [Escherichia coli 042]  ali follow..  10  5.............DTGRRSLVQYLSGSTGEPDGRTENRRMFMDTIGEAVLRSCQPYVRTVFNSVVVLNIMRTTHIVSMDVAH-------LANISASGQMFNYSLS.................................................................................................... 89
10 -4.360IDP95451 set236a-053 [Undefined organism]  ali follow..  325.LLYGADRNCIHMQQDWQADRR----VQTPERTRGNAGRGRIQ------------------AHFGIVGVCAEMVAERKRARESELR--LRMYQDGSGRVANLLILQKASA............................................................................................... 410

FFAS is supported by the NIH grant R01-GM087218-01
1 2 9 7 3 7   jobs submitted since Jan 1, 2011
Comments and questions to: webmaster

Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Plewczynski D, Tkacz A, Wyrwicz LS, Godzik A, Kloczkowski A, Rychlewski L. Support-vector-machine classification of linear functional motifs in proteins. J Mol Model 2006 Aug;12(4):453-61. Epub 2005 Dec 10.