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Query: gi|29345414|ref|NP_808917.1| hypothetical protein BT_0004 [Bacteroides thetaiotaomicron VPI-5482], from B.thetaiotaomicron

Results of FFAS03 search in CSGID
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MIDIIANIASILGFTMQMNDKFFAHGMNKEQADNEMLLLFLKQLSVKSKAIKEIHQKYHSLSNDFRLVAVFLTNPVIYEKIVTNRSRALRNALKESLQTPSARIAQTQLSAQLRPCFENLLVSIKDESHLSVEFSGINDCEMKAILRKILNAQKEIFQLHQQFCGIMKTIGSYPLGNWGDSEFDFIKTNQRVFISDFYSIIDYADIILMGYLDIYHCALNLKLast
1 -6.100IDP06398 gene: ORF52; ORF52 [Human herpesvirus 8] YP_001129405 [Human herpesvirus 8]  ali follow..  15  4.......................PRGRPKKDLTMEDLTAKISQLTVENRELRKALGSTADPRDR-------PLTATEKEAQLTATVGALSAAAAKKIE---ARVRTIFSKVVTQKQVDDALKGLSLRIDVCMSDGGTAKPPPGANNRRRRGASTT................................................................... 125
2 -5.700IDP06047 hypothetical protein jhp0257 [Helicobacter pylori J99] NP_222978 [Helicobacter pylori J99]  ali follow..  13  25...IFLSFVLIGGLVWFMHNAIKRAQDNASSLTIQERLY-TDETLKLIKEAKKRLNYNDDIRDVLQGLLNIVPDLITINSIEIDQQSVVVSGK-----TPSKEAFYFLFQNKLNPMFDYSRAEFFPLSDGWFNFVSTNFSNSLLI............................................................................. 170
3 -5.550IDP04545 glutathione peroxidase [Clostridium perfringens ATCC 13124] CPF_1198 [Clostridium perfringens ATCC 13124]  ali follow..  15  26...LIVNTATGCGFTPQYEG---LEVLYKKYHDKGFEILFFEQAPGSNEEIVGFCKLNYGTT--FKTFAKVEVN--LYKFLKKEAPMAKEDETSLGFYDKLKGLGFTTEGEEIKWNFTKFLID-KNGEVVARFAPTFEPEKLDELIEELLE....................................................................... 177
4 -5.210IDP90846 gene: folE; GTP cyclohydrolase I [Yersinia pestis CO92] YPO1505 [Yersinia pestis CO92]  ali follow..  19  73..........IFSGLDYENFPKITLIQNKMKVDEMVTVRDITLTSTCEHHFVTIDGKATGLSKINRIVQFFAQRPQVQERL----TQQILLALQTLLGTNNVAV-------------------SIDAVHYCVKARGIRDATSATTTTSLGGLFKSSQNTRQEFLRAVRHHG................................................... 220
5 -5.140IDP91725 gene: C1orf94; hypothetical protein LOC84970 isoform b [Homo sapiens] NP_116273 [Homo sapiens]  ali follow..  15  12..SATSTVTDILCAAEVKSSKGTEDRGRILGDSNLQVSKLLSQFPLKSTETSKVPDN-KNVLDKTRVTKDFLQDNLFSGPGPKEPTGLSPFLLLPPRPPPARPDKLPELPAQKRPVFA----KICSKPKADPAVERHHLMEWSPGTKEPKKGQGSLF................................................................. 163
6 -5.100IDP06369 gene: vIRF-4; vIRF-4 [Human herpesvirus 8] YP_001129412 [Human herpesvirus 8]  ali follow..  14  726..............................DPPDSQRVSFVVEIFVYGNLRGTLRREGDA-------EAMLCSWPV------DTLGHLCQSFVPELLRIPRLTVPSPEQMEILNRVFEGL-IYSRNATQVEGWWFGNPNSRYERILRSFSPRVQQLFNTARYLATTAATCGTVFFGASPASTFQNVPLTVKIFIGSIWDSL..................... 910
7 -4.900IDP06395 gene: ORF50; ORF50 [Human herpesvirus 8] YP_001129401 [Human herpesvirus 8]  ali follow..  15.......VESFVGLSDELKAQLY-----------QCVLLINDAYE-PSDLNRVVEDVCIRIMKECSKLGAL--CGLFTDINMFNLFCFFRASRMRTKGAAGYNVPCAEASQGIIRILTERILFCTEKAFLTAACSGVSEMKAKCL-RRLVCNRRPIMILTSSLLKLYNTY----------DTAGLLSEQSRALCLLVFQPVYLPRIM............... 210
8 -4.710IDP06065 hypothetical protein jhp0520 [Helicobacter pylori J99] NP_223238 [Helicobacter pylori J99]  ali follow..  23  13..................................................................VFILYMGVRTFFFKTVAKRQERTNASMKLTLQEAEILIQKHQL--QLQRALGNIDILTQEMSSLKTELKALRNSEYKGESDKYKN---RIKQLEQKIEALL....................................................... 110
9 -4.710IDP90588 RecName: Full=GTP cyclohydrolase 1; AltName: Full=GTP cyclohydrolase I; Short=GTP-CH-I Q9KLX5 [Vibrio cholerae]  ali follow..  16  97.....................................MVKVKDITLTSTCEHHLRGKIIGLSKINRIVRFFAQRPQVQERM----TQQILVALQTLLESDDVAV-------------------TIDATHYCVKSRGVMDATSVTTTTALGGIFKSNPATRAEFLHGLR...................................................... 217
10 -4.590IDP01516 gene: sspA; stringent starvation protein A VC0576 [Vibrio cholerae O1 biovar El Tor str. N16961]  ali follow..  13  1..........................MAVAANKRSVMTLFSSASDMYSHQVKGVSFEVELVDENNLPAELIELNPLVDRELALYDSKIIMEYLDERFPHPPLMPVYPVARGNSRLMIYRIERNWYSLAEKVVNGSPEVAENARNKLRNDLLTLGPVFAEFEYFMSEEFSLIDCYLAPL............................................ 164

FFAS is supported by the NIH grant R01-GM087218-01
1 3 3 6 4 4   jobs submitted since Jan 1, 2011
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Ginalski K, Grishin NV, Godzik A., Rychlewski L. Practical lessons from protein structure prediction. Nucleic Acids Res. 2005 Apr 1;33(6):1874-91.