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Query: gi|29345424|ref|NP_808927.1| two-component system histidine kinase with response regulator receiver domain BT_0014 [Bacteroides thetaiotaomicron VPI-5482], from B.thetaiotaomicron

Results of FFAS03 search in PfamA32U
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MLILLLGFIIYLFRGERMKRDELKWEMKELGIIRDLTRKTYGHLLELASQGEVVSTWSESDLRLYRERREKTCGVLKELQQFVHTPEQQERIDSLCLLLEQKEMLLSAAMSTFDELENIGETVGEKVPAIVRQVRRQPTRNILAPAVKEAYAGTATTGEEQPEKKKSFLKKVFGGKEKKSAYRQQREQQRAASEKVPSSTTRNSGNNAAVHLLHALSREVTEKQKEQREKLSAQMDSLHLSSRALNKRLNGLVGDFDKVAGERLETRYNAIAADREKSYNTAATLALFVFLLAIVLYTLLHRDVNRCLRYRRELESSDLKNKELLQSRKNMMLTIAHDLRAPLTAIKGYAELLPGEVDEKRKDEYAVHIVRSSDYMIGLVNSLIEFYLLDAGKGKMNVTVFRPLSLFDEIVKLHTPSVRKEGLTLCTDFEGLDTVVEGDRPRIMQIANNLLSNAIKFTRKGKISLQAAYGQGELRFSVQDTGPGMTEDEQKRIFRAFERLDNARYLPGFGLGLAIVSRLTELLGGRITVESPYGTGSLFRVALPLSEVAKHGEDGENGYAEDYGLEGTYVLVIDDDRIQLDITRRMLVRNKVRCECCRTVRELMAALRERTYDLLLSDIQMPDMDGYRILDLLRSSNMENARTIPVLAVTACADDEEHYISFGFAGCLRKPFSMDELISTVSRMVVKTGKKEPDFSFILSGEKDKGRMLDIFIRETEESIHTLENALCGHDRDTIHKVLHKNLPLWETVRMNFPMARLRGLVTHTAAVWEERQYMEVGEIIHAAEKLAESARKIRESIDEEHTDYRGLast
1 -36.500PF02518.26; O52937_9CYAN/626-739; Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase  ali follow..  43  1.....................................................................................................................................................................................................................................................................................................................................................................................................................................................GDSTRLQQVVWNLLSNAVKFTKNGRVEIRLECVDSQAEIKVSDTGKGISPDFLPHVFESFRQADITRKFGGLGLGLAIVRHLVELHGGTIYAESPEDLGATFTVRLPL...................................................................................................................................................................................................................................................................... 112
2 -27.800PF00072.24; RSSB_ECOLI/10-121; Response regulator receiver domain  ali follow..  20  1.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ILIVEDEQVFRSLLDSWFSSLGATTVLAADGVDALELLGGFTPDLMICDIAMPRMNGLKLLEHIRNRG----DQTPVLVISATENDIAKALRLGVEDVLLKPVKDLNRLREM.............................................................................................................................. 110
3 -25.600PF00512.25; Q55783_SYNY3/185-253; His Kinase A (phospho-acceptor) domain  ali follow..  30  1......................................................................................................................................................................................................................................................................................................................................SMTINLSHIHHEFRTPLTAIIGFARMLRDEKLNPKQHQYVQGTLNSAEHLLSLVNDFLDLSKIDA................................................................................................................................................................................................................................................................................................................................................................................................................................ 68
4 -17.300PF16968.5; Q9HW97_PSEAE/1-133; Pilus assembly protein TadZ N-terminal  ali follow..  13  4........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................NFVALTQHPGELDWLQNSLASAGQVVPASASLEELLALLDVTAAGVLFISLGKSNLVSGALVEGLVSAR----PMLSVVAIGDGLDNQLAAMRAGARDFITYGARASELTGLIRRLGGRLPSVPVS................................................................................................................. 129
5 -15.500PF01993.18; F6D7B4_METPW/3-276; methylene-5,6,7,8-tetrahydromethanopterin dehydrogenase  ali follow..  14......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................SPVIDLMLDERADRPNISVKSFGSGAKMG-PEEIEEVVPKVADLDAAFVIFISPNPAAPGPAKARELLSA-----MDVPAIIVGDGPGARVKYILVKGDPMIRREFDPTEMASFNADVIKVLAATGAYRCVQKTLDALIAAAEAGEAIEVPKLVLTRDKAIAAAEFKNPYAKA-------KAMAAYTIAEKVADIDVEGCFMTKDASSHEMIAVAAKLAAEAREIEKANDTVLRTPHSGKG 261
6 -13.300PF06490.11; Q5QUH7_IDILO/6-109; Flagellar regulatory protein FleQ  ali follow..  14  2.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................VYLVEQQPERRQHFETVLTFIGETVEVISPSDTLKL--CAADALCVIAG------NGIENLHKLAGDA----PHLPFICATDDQSNAL--QKANVIGPLEKSFDYSSLSNMLHY............................................................................................................................ 101
7 -13.000PF03709.15; Q92ZT9_RHIME/22-134; Orn/Lys/Arg decarboxylase, N-terminal domain  ali follow..  1.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ESNLETKRLLAH-IVAENFEVELRGSYNADVS--EDASVGAYIGTVEGGRLEDRKFVRAVRDIG----FRTPLWALADSHGIADIKMAGEVDGFVYLGQQTPAFYA................................................................................................................................ 103
8 -11.000PF10090.9; Q20YL4_RHOPB/92-213; Histidine phosphotransferase C-terminal domain  ali follow..  1......................................................................................................................................................................................................................................................................................................................................................................................................................LGDAQNMARGHLEDDKTKIEWNLPRIL------PKNKVKLLLNMLVIAQQIPRGGVLTVEAVGEGDAMGFRVAASGLNARQTNIVDMLSGAHAGSID----AHAVQPYYTRLLAQACGFSVSLAPAGEA................................................................................................................................................................................................................................................................................ 122
9 -9.790PF13581.6; A9B3A3_HERA2/9-137; Histidine kinase-like ATPase domain  ali follow..  15  6....................................................................................................................................................................................................................................................................................................................................................................................................................DSLGALCKFAYQAALDAGLN--------EHTAWEIELAVDEAATNIIQHAYSAERPGDVRLVCGRDGSRFVVRLFDRGVPFDPETVP---PPDLTSSIETREAG-GLGMYLMGRMMD----DVQFNYNPETGEN............................................................................................................................................................................................................................................................................. 123
10 -9.600PF15449.6; F7B3J9_HORSE/1-1249; Retinal protein  ali follow..  10  145.............................................................................................................................................................................................................................................................................................................RKPKCHKSGKQGHCCQTIFPAHGSEVKVDFPEPLAHQLHSCLCAVLHITHQATQTQELDEVNQLLGEISKDGEVLLQLLQQLLQYTKLQVLSGAVASLT---GSFLEGSSSYLHTTASGKKLSTKRGADE----------RLLRALGQLESLASDHSDPGV---------QGLPLCSEDSGIGADNDSVLLADKLGKQASLDLGLEPADWKSGILPPVESRLLGHAWQQSPFQMGSDRPQDCPLSRPLTAKVQPAAQGGTGSPGPSSTSPENTTSRPPGMGKSNPHESLGMEISVEAHLPKSSRLMDTPSLS-----LRSP--QAQEMILKMKEAISERIKFVPLPSGHQDWAEEEERRTA------PRPSTVSGSRREPER--QRRSQSEGCLKSHMEDATLQE--LRRVQRDLSQRLEAFYTLGTQRQGQGKEQVLHPRAAA.............................................................. 632

FFAS is supported by the NIH grant R01-GM087218-01
1 2 7 7 0 6   jobs submitted since Jan 1, 2011
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Ye Y, Osterman A, Overbeek R, Godzik A. Automatic detection of subsystem/pathway variants in genome analysis. Bioinformatics. 2005 Jun 1;21 Suppl 1:i478-i486.