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Query: gi|29345415|ref|NP_808918.1| 30S ribosomal protein S17 BT_0005 [Bacteroides thetaiotaomicron VPI-5482], from B.thetaiotaomicron

Results of FFAS03 search in VFDB
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MENGIEEILKEHEALCSRVFHLLNTGNPQTKDIELIIPKVKELFGMLEAVNTKQITAQQYNGLLNVMSEWNAIFSYFNIKMVPCRLRPFLWNSPKVAVKRIPRQCIEGIVVSTKMQKTVVIEVERTKKHPKYGKTVQYTKKYKIHDPLEECSVGDRVLAHETRHFSKTKYFRFYRKLYLast
1 -65.100[J] KOG1728 40S ribosomal protein S11  ali follow..  18  1MSEQTERAFLKQPTV-------------------------------------LNNKARILAGSKKTPRYIREVGLGFKAPRDAVEGTYIDKKCPWAGNVPIRGMILTGVVLKNKMTRTIVVRRDYLHYIKKYRRYEKRHKNVPAHCSPADIHPGDLVTIGECRPLSKTVRFNVLKVN. 143
2 -63.100[J] COG0186 Ribosomal protein S17  ali follow..  40  1..................................................................................................MTDKIRSVQGKVVSDKMEKSFVVAIERKVKHPLYGKFIRRTTKLHVHDENNEAKVGDTVEIRECRPLSKTKSWTLVRVV. 79
3 -57.300[J] KOG1740 Predicted mitochondrial/chloroplast ribosomal protein S17  ali follow..  27  3.......................................................TSSLTSSLQALKLSSPFAHGSTPLSSLSKPNSFPNHRMPALVPVIRAMKTMQGRVVCATSDKTVAVEVVRLAPHPKYKRRVRMKKKYQAHDPDNQFKVGDVVRLEKSRPISKTKSFVALPVI. 124
4 -6.650[S] COG2028 Uncharacterized conserved protein  ali follow..  13  15...............................................................................................................LGSFMKAVTFPVP-----WEYLNRIFEGKNVFVKPATLKVEEGMKVIFYASRENQGWHGEAEVERV. 75
5 -5.270[S] COG4481 Uncharacterized protein conserved in bacteria  ali follow..  19  4.....................................................................................................................................................EFDLGYIVEMKKQHPCG-TNRWEIIRV.. 29
6 -4.890[O] KOG1815 Predicted E3 ubiquitin ligase  ali follow..  11  401AESGLERLHQPSKDFNDFRTKLAGLTSVTKNYFENLVKALENGLADVDSHAACSSKSTSSKSTGCSSKTRELVDPRQGTKPELIVCNCTMHTLEEKPKLHAHSGILIGFVTSFLLMYSV----------KEYEKDEQRRVKIKSH................................. 561
7 -4.800[S] KOG4837 Uncharacterized conserved protein  ali follow..  14  74.......................................................................................................KVVKTKVNSLRADLLLKLGMARNKVELNFYESKIRVNGKKLPKKSAQLEVGDEIDV................... 131
8 -4.780[O] COG0298 Hydrogenase maturation factor  ali follow..  16  5.........................................................................................................VPGQVLAVGEDIHQLAQVE-------VCGIKRDVNIALICEGNPADLLGQWVLVHVGFAMSIIDEDEAKATL. 69
9 -4.630[R] KOG4758 Predicted membrane protein  ali follow..  1....MEEVEEEVRRIVEQVKELHDSSTSFVSSSSQEELSLRNRASVVDSSI-RRLHSTLASDKHLDPKLFEKLEEDLQRARCMLADGDTSSFLPSKPQAGRFVRMFLGPVNVRASRKD-----IQLKVKEEYNSYRDRTALLFL.................................. 134
10 -4.620[LDA] COG5049 5`-3` exonuclease  ali follow..  12  37..NGIEEMYIAIFNYIEHLFEKIKPKKLLYMAVDGCAPRAK---------MNQQRSRRFRTAKDAHDARLKAERNGEDFPEEQFDSNCITPGTTFMERVSRQLYYIHKKVTNDSQWQNIEVIFS----EHKIMEYIRTQKAQPSYNPNTRCLYGDLIMLG----LSHDPHFCLLR... 224

FFAS is supported by the NIH grant R01-GM087218-01
1 2 9 7 3 7   jobs submitted since Jan 1, 2011
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Zhi D, Krishna SS, Cao H, Pevzner P, Godzik A. Representing and comparing protein structures as paths in three-dimensionalspace. BMC Bioinformatics. 2006 Oct 20;7:460.