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Query: gi|29345417|ref|NP_808920.1| hypothetical protein BT_0007 [Bacteroides thetaiotaomicron VPI-5482], from B.thetaiotaomicron

Results of FFAS03 search in VFDB
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
    .   10    .   20    .   30    .   40    .   50    .   60    .   70    .   80    .   90    .  100    .  110    .  120    .  130
# Score Template Links and tools%idFirst MHPPRRVSEFLLSVLPLLPPFSIVICKGNAIYANTQTVKGLSLFPYMSHSVKERLFFKARAISPMTIDSSALKSLKKVIPVDFLLGFYSLRVTIYVILLLLTHKISWSAYFQCLNCIYRILRIFKMHGITLast
1 -8.230[S] KOG2889 Predicted PRP38-like splicing factor  ali follow..  15  2...........................ANRTEKAAKTVKGFLVEKIIRQRIYDSMYWKEHGMDLRYIGGIYAGNIKPTPFLCLALKMLQIQPDKDIVLEFIQQE---FKYIRALGAMY--LRL....... 109
2 -7.510[S] COG5473 Predicted integral membrane protein  ali follow..  16  150..PPASISEFWTSVTTTEQGWNLILV--GFVFAVVVLSISVVTFPLLLDRDVGALTAMETSVRATLANPVPVALWGLIIAAGLVIGSIPIFVGLAVIMPIFGHA-TWHLYRKLVE............... 263
3 -6.740[R] KOG2888 Putative RNA binding protein  ali follow..  25  15..........................KKAGKQHNTLPFWGMNLNALILANIQSSSYFKVHLFKLKTYHEVVDEIYYQVKHMELLYKLYTLRLTRKQINGLLNHT---SAYIRALGFMY............ 141
4 -6.430[S] KOG4811 Uncharacterized conserved protein  ali follow..  21  1..............................................MAKSLRSKWKRKMRAEKRKKNAPKEASRLKSIL................................................... 33
5 -6.330[G] KOG2287 Galactosyltransferases  ali follow..  17  5.....RLARFVSEVAP--PQFVTVMRRHRAAKQKLDTIKGMVVMMKTSHQ------------------TLLIFRSCRDLAAIVGFRILLFTGFSGFYLVFLAFKF......................... 96
6 -6.050[U] KOG3103 Rab GTPase interacting factor, Golgi membrane protein  ali follow..  12  117LNPLRGTDQQILQDTDMAGPLVFCLTLGGFLLLSGKVIYGIGVMGCIFFYCLLSLMVSRSQVTFGAVASVLGYCLLPMVVLSGINILITIQGTLGLIVSGIS--IFWCAI.................... 228
7 -6.030[O] KOG4642 Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats)  ali follow..  10  32..........................QGNRLFVGRKYPEAAACYG-ITRNPLVAVYYTNRALCYLKMQEQALADCRRALELDSVKAHFFLGQCQLEM----------ESYDEAIANLQRAYSL....... 123
8 -5.660[O] COG0576 Molecular chaperone GrpE (heat shock protein)  ali follow..  12  86......SQSLAQDLLPALDSFEKALATTSDQEEVKQILKGMEMVYNQILVAFEKEGIEVQAVMQDSDENAGSNEITAELQKGYKLKDRVIRPSMVKV................................. 189
9 -5.620[O] COG3175 Cytochrome oxidase assembly factor  ali follow..  11  32......VVVMMFGFGYAMVPLYKKICELTNINVLTTRDLDGGALRNTQVDQARTVTVEFDSNSQGPFRFRPVKNSMEVHPGEINQIVYEVVKEGRSVSAQAIPSYA-TEFFKKIECF............. 146
10 -5.430[K] COG1594 DNA-directed RNA polymerase, subunit M/Transcription elongation factor TFIIS  ali follow..  12  1.......................MFCPGSLMTPVNGRYVCPSC---YEVSKKKEDLKIVNKSNDKETIMIREEVSAEPLDSDAICPRCHHKGARYVLKQTRSADEPETKFYTCEECGYR........... 96

FFAS is supported by the NIH grant R01-GM087218-01
1 3 3 6 4 4   jobs submitted since Jan 1, 2011
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Ginalski K, Grishin NV, Godzik A., Rychlewski L. Practical lessons from protein structure prediction. Nucleic Acids Res. 2005 Apr 1;33(6):1874-91.