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Query: gi|29345422|ref|NP_808925.1|(removed signal:1-34) hypothetical protein BT_0012 [Bacteroides thetaiotaomicron VPI-5482], from B.thetaiotaomicron

Results of FFAS03 search in VFDB
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst DEMFDRETTEVLPSVISEDRTLYTDTEYLISKPVFVTNGATLTIQRGALLKALPASGQGKATIVITKGCKIVANGTEDAPIVMTALIKEPGSWDGVIVLGKAPVSYECETLYCGTVATDISYGGSEENDDSGSLQFVRVEYAGAAGGAVTFDGVSRGTTIDHCQSYCSGGDGFMFNGGTVNAQYLISTGASQNGLCFNEGYTGKLQYVMATAPIRKSVWSVVSCNGTGKLEVPSFYTHPVIANLSTAHDNKSHGRRYPIAVSAYSRLTLVNSSTREAVADDDIPVQLIGGQPGALPGIDYILINATREVTSLTPDRFVLDTFFERTDYEGAVAPDVMKDRDWTKAGWVRQGKKPLast
1 -9.420[M] COG5434 Endopolygalacturonase  ali follow..  13  104.............................LSGSLKLKSGVTLWIDTGVTLFASRNPAD--DNGVGTCGTATTSNTKSCNALIVARDTVGSGIVGDGIIDGRGGSLVTSGPNANRLTWWDIAYLNKTKGLNQQNPRLVQLYNGSATLYRVTVQN--AGVTAWGIKIVTKNTDGFD------QSTNVVLANSGDDHVAIKASGGATRN--LLFAHNHFYYGHGLSIGSETDGG----VSNMQVTDLAMDGNDSSGGNGLRIKSDISRGGKVNNIVYNG.............................................................................. 385
2 -6.250[T] KOG3885 Fibroblast growth factor  ali follow..  74................................RLYCRQGYYLQMHPDGALDGTKDDSTNSTLFNLIP-RVVAIQGVKTGLYIAMNGE-------GYLYPSELFTPECKFKESVFENYYVIYSSMLYRQQESGRAWFLGLNKEGQAMKG.............................................................................................................................................................................................................. 184
3 -6.060[S] COG2930 Uncharacterized conserved protein  ali follow..  12  33................GAQEVIPPSVLTNAKGLVIMT-----VLKAGFLFSGRIGSG-----LIVAR----LDDGTWSAPSAVMTGGMGVGAQIGSELTDFVIILNSKAAVQTFARLGSITLGGNSVGGMAPMFSYSKTK------------GLFAGVSLEGSVLVERRDANRSLYRGDITAKRLLS....................................................................................................................................................................... 195
4 -5.710[S] COG2911 Uncharacterized protein conserved in bacteria  ali follow..  13 1091...........LKARLQGDLRMMQDQR-GLNGQINIPSGSDLIVNKGILLFSGPPDQPLLNIEAIRN-AGVRVTGMADSP-VFSDPAMSQQEALSYLLRGQGLGNSGADSSMMTSMLIGMGVAQ-----SGKLVGKIG-EAFGVSNLALDTQGVGDSSQVGYVDLQIKYGVGIFDSLATLTLRYLEAVSGIDQALDL............................................................................................................................................................. 1299
5 -5.240[G] COG4632 Exopolysaccharide biosynthesis protein related to N-acetylglucosamine-1-phosphodiester alpha-N-acetylglucosaminidase  ali follow..  12  115............NRETVLSMAKRKRSVVAINASGWRSNGEVLQIKDGVLYKDYDAAGYTGEACVFFDDGTMKVYGNREVDADILISKGARNSFAFLVKDSKPRTAQMTTWADLNVKHPRQAIG----QRSDGTLVIITVDGRSLRSSGITA------YDMPSLFLSEGCINAFLLDGGQTAVEGKYINNISDGI................................................................................................................................................................ 295
6 -5.220[G] COG3866 Pectate lyase  ali follow..  10  71....AASYNVYYKAADALDSSYTKIDDELIRQYPSSFRADVLGLAAGNVLKIVPVVNGVDAINEEATTQALTVKANKREGFAFSPASPMKTSSGGYNDDGTV---ASNAEILYITASNVNTVTENVVTNAKGTKTTCTIRMIGE--YNVTFEGVGKDLELRNVGIMMFGDDAISLDTDNQNIHNNDLFYGAAGHDADQVKGDGSCDIKQDSTFVSVSYNH-----HDSGKSSLCGMQDTQNYYVTYHHNWFDHSDSRHPRIRVGS-VHVYNNYFDGNA............................................................................ 391
7 -5.190[M] COG2834 Outer membrane lipoprotein-sorting protein  ali follow..  13..SAIAAPKDTLSERLAMSEGFSAT----FNQQVLSPEGKVILTGNGKVDIARPSTETPDENLLVSDGTTLWHFDPFVEQVTLYRAEEALEQTPFVLLTRNKASDWDAYHVEEKGDVFTLT-----PTALDSNQGRFQITISEKVVQGFKVEQDGQQSEFTFSKVKQQNASVFNY................................................................................................................................................................................... 185
8 -5.070[I] COG2272 Carboxylesterase type B  ali follow..  12  87...............LYLNVWAPAVRHEPLPVMVWLHGGG-YTIGAGSLPPYDGQALAKRGAIVVTVNYRLGHLGFFAHPALEGEEAECIHNFALL--------------------------------DQIAALRWVQ----------------------DNIAAFGGDTQNVTLFGGARSVLSLMASPLAKGLFHKAIIQSGYTLPDTPREVALKKGVALAEHLGLAHATAEQLRALPA.................................................................................................................. 259
9 -5.040[C] KOG4110 NADH:ubiquinone oxidoreductase, NDUFS5/15kDa  ali follow..  16  113..................................CWDYSQMLAIDINPTLMG----------LKSCREPQELWKGCEEIPSTVTGDE------------GKKPKKQKTENFPVH------------------VLYVIEIQYASQIEIGLEMSGVNRPKMMHYSLLQKNNHEN---FG-TYTIRYILV....................................................................................................................................................................... 231
10 -5.010[S] COG5306 Uncharacterized conserved protein  ali follow..  15  685.................................................LEGSNKNHLVYERMANETQDELISYNGKHFPI-------------GLVMIPYEIYDRKLATLM-------IEIGKNPNEERVSSADYYFLTYGGNKVEGYRVWGISYGVTLSNIPFFLDPQTAKEILGGT----------------DLLVGYN........................................................................................................................................................ 814

FFAS is supported by the NIH grant R01-GM087218-01
1 2 9 7 3 7   jobs submitted since Jan 1, 2011
Comments and questions to: webmaster

Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Plewczynski D, Tkacz A, Wyrwicz LS, Godzik A, Kloczkowski A, Rychlewski L. Support-vector-machine classification of linear functional motifs in proteins. J Mol Model 2006 Aug;12(4):453-61. Epub 2005 Dec 10.