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Query: gi|29345426|ref|NP_808929.1| hypothetical protein BT_0016 [Bacteroides thetaiotaomicron VPI-5482], from B.thetaiotaomicron

Results of FFAS03 search in VFDB
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MKILKDTVLFGLFASYADGVRNGEEKLSAAYDDFATLLATLPTDGTNICAQLRRLFYTKIELRGIQETVSTNGMERHVLFDVYIGKALALLDAEEQMMKEVLRHGGTEAMGLKEEAVCRNGKKGSVTLTWNGTDSDLIELVAALMAAGVIGTAEGRELKVVDVIRVFEEVFHLKINALYTKRGKVFDRCTDTTPFIDSLRRSYNRMLDARLALast
1 -7.090[S] KOG3326 Uncharacterized conserved protein  ali follow..  57..................................................................................................................ERTDESIETKRARLLYESRKRGMLEILLSLFAKEHLQHMTEKQLN------LYDRLINEPSND-WDIYYWATEAKPAPEIFENEVMALLRDFAKNKN. 148
2 -7.050[J] COG3719 Ribonuclease I  ali follow..  152................................................................................................................................EYAGTMIRLDKAIKDSALGQFLTDNYGKTVSRAEFDSVVAQMWG------QDNVKAVKVNCHGNPAYLTEIQFSLKASMINAPL 243
3 -6.890[O] COG5054 Mitochondrial sulfhydryl oxidase involved in the biogenesis of cytosolic Fe/S proteins  ali follow..  94................................................................................................................................SWT--------LLHSVAASYPAQPTDQQKGEMKQFLNIFSHIYPCNFEKYIRENAPQVESREELGRWMCEAHNKVNKKLRK... 171
4 -6.890[O] KOG3355 Mitochondrial sulfhydryl oxidase involved in the biogenesis of cytosolic Fe/S proteins  ali follow..  94................................................................................................................................SWT--------LLHSVAASYPAQPTDQQKGEMKQFLNIFSHIYPCNFEKYIRENAPQVESREELGRWMCEAHNKVNKKLRK... 171
5 -6.770[K] KOG4282 Transcription factor GT-2 and related proteins, contains trihelix DNA-binding/SANT domain  ali follow..  13  67................................................................................................................GNNSSGRPTGGGGREDCWSEAATVLIDA--------ELSRGNLKQKHWKEVAEIVSSRED-RIDTVKKKYKQEKVRIANGGVFFDKLDRLIGST...... 176
6 -6.740[NU] COG4966 Tfp pilus assembly protein PilW  ali follow..  26  14......................................................................................................................................LSLMELLIAL-LIGSI------------LIVGVIQVF-LASWTAYRLSQGIARNQESGRFALDFLTRDIRM....... 70
7 -6.420[NU] COG4969 Tfp pilus assembly protein, major pilin PilA  ali follow..  1...............................................................................................................................MNTLQKGFTLIELMIVIAIVGILA--------------------AVALPAYQDYTA--RAQVSEAILLAEGQKSAVTEYYLNHGE 63
8 -6.070[U] KOG3198 Signal recognition particle, subunit Srp19  ali follow..  100...........................................................................................................................................VLYPCYFDINRSHKEGRRVPAKTMADAVRELIRVLFKENGQLIGAATKFKGGKRQLMKAVGEYMKRHPTTIES 202
9 -5.950[S] COG5352 Uncharacterized protein conserved in bacteria  ali follow..  19  1...............................................................................................................................MNWTDER---VELLRKLWSEG---------LSASQIAAQLGGV-NAVIGKVHRLKLSGRGRATATPA.................. 56
10 -5.900[S] COG5451 Predicted secreted protein  ali follow..  72................................................................................................................SVSEARPAEAAPPKPAPYDDKLARLSEILGAVQYLRTLCPSSGPEDSMSALLAAMTAAFNRGYRSFAAIHTSCTRAAIMAEENYRNEGATLAQEIASRFG 185

FFAS is supported by the NIH grant R01-GM087218-01
1 2 9 7 3 7   jobs submitted since Jan 1, 2011
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Zhi D, Krishna SS, Cao H, Pevzner P, Godzik A. Representing and comparing protein structures as paths in three-dimensionalspace. BMC Bioinformatics. 2006 Oct 20;7:460.