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Query: gi|29345430|ref|NP_808933.1| hypothetical protein BT_0020 [Bacteroides thetaiotaomicron VPI-5482], from B.thetaiotaomicron

Results of FFAS03 search in VFDB
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MDPLSRDENYIQRLTPEMWREIKAASPEVTAEMLDDLKHGNTYYTGVETDKGVLIFSRDIIGEGQFSDYMYKYIENDFFASEFVLKSLAVHELRGWPSLMEGKLNRCHNRFGWWGDGETIRRAFQDRSVLKNVTDSETYDFTPPPHGRTITGLast
1 -6.830[P] COG2156 K+-transporting ATPase, c chain  ali follow..  10  22...........................................YPLLTTVLGQWWFPWQANGSLIREG--QNFTGNGYFHGRPSATAEMPYNPQASGGSNLAVSNPELDKLIAARVAALRAA--VPVELVTASASGLDNNITPQAAAWQI.. 141
2 -5.830[KT] COG3279 Response regulator of the LytR/AlgR family  ali follow..  10  10...........EQPAREDLRERLNEEHGI--EIVAECSNALEAIPAIQRLQPDVVFLDIQNGLELASMLNPESMPHIVFVTAYDEYAIRAFEEHAFDYLLKP.................................................. 102
3 -5.700[R] COG4996 Predicted phosphatase  ali follow..  13  7LDGTVWDHHDISSLYPPFKRVSPLKIQDNRGAEVTLRKHVRDFLQWAR-NSGHIITTLSWNDFQVAYQALRAFEIDAYFH........................................................................ 85
4 -5.680[V] COG1680 Beta-lactamase class C and other penicillin binding proteins  ali follow..  53.............LVVIDGNQRVFRSYGETRPGNNVRPQLDSVVRIASLTKSEMLVKLLDQGTVKLNDPLSKYAPPGARVPTYNGTPITLVNLATHTSALPREQPGGAAHR--------PVFVWPTREQRWKYLSTAKLKAAPGSQAFDLLA 192
5 -5.590[O] KOG0182 20S proteasome, regulatory subunit alpha type PSMA6/SCL1  ali follow..  10.......DRHITIFSPEGRLYQV-------EYAFKAINQGGLTSVAVRGKDCAVIVTQ----KKVPDKLLDSSTVTHLFKITENIG-CVMTGMTADSRSQVQRARYEAANWKYKYGYEIPVDMLCKRIADISQVYTQNAEMRPLGCCMILIG 142
6 -5.400[R] COG2961 Protein involved in catabolism of external DNA  ali follow..  24...............................LIIEAMKEKEKPFLYLDTHAGAGRYQLSGEHAERTGEYLD--------------GIGKLWQRDDLPADLAPYMSAINYFNRGEKLRYYPGSPLIARHLLREDDKIHLTELHSS........ 122
7 -5.280[S] COG3558 Uncharacterized protein conserved in bacteria  ali follow..  2......SRPPVPPFTCKTAIEKVRLAED--------------GWNSRDAAKVALAYTVDTTNREEAQAFLTRKWNR............................................................................ 66
8 -5.190[U] KOG3368 Transport protein particle (TRAPP) complex subunit  ali follow..  55..................SLRNMVKKITADQDQFMSYTTSKYKLHFYETPTNLRLIFITNPKIDSLTHVLQQIYTTLYVE........................................................................ 116
9 -5.060[S] COG2879 Uncharacterized small protein  ali follow..  16  4............................................SLAKAGKYLGQAAKLMIGMPDYDNYVEHMRVNHFFRERQDARY................................................................. 56
10 -5.060[S] COG1667 Uncharacterized protein conserved in archaea  ali follow..  13  4...............PKGEVVELGKRGNFRDILKELSATGFTGYLEVSYKRAKVLFSNGKVGEKALEELLGL-----------ESCVVDVYALDEGKVAKALEWN............................................... 102

FFAS is supported by the NIH grant R01-GM087218-01
1 3 3 6 4 4   jobs submitted since Jan 1, 2011
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Ye Y, Godzik A. Flexible structure alignment by chaining aligned fragment pairs allowing twists. Bioinformatics. 2003 Oct;19 Suppl 2:II246-II255.