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Query: gi|15895331|ref|NP_348680.1| segregation and condensation protein A (CA_C2061) [Clostridium acetobutylicum ATCC 824] (Range: 1-249), from C.acetobutylicum

Results of FFAS03 search in H.sapiens
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MTLNINIDNFQGPFDLLLHLIRKNKMDIYDIKIFDITNQYIQYLNEMKEMDLEITSEFIVMAATLIEIKSKYLLPKTKEEEEEKEESDPTKELVSKLVEYKKFKLAADFLKNRELDYGEVFSKKPEIIDDRTEDADNKDILKDITLLDMYKLFEKLMEMYRSRINTNNSLPDKIAPDIYKIEDKMDEISEIIKSNKEIYFSNIINKCSNKIEVVVTFLALLELIKLKDIKVYQSNNFKDIYIERVSAVELast
1 -11.700sp|O60216|RAD21_HUMAN Double-strand-break repair protein rad21 homolog OS=Homo sapiens GN=RAD21 PE=1 SV=2 (Range: 451-631)  ali follow..  14  102................................................................................................................................................................................EERRWNKRTQQMLHGLQRAESISLLELCRN-TNRKQAAAKFYSFLVLKKQQAIELTQEEPYSDIIATPGPR.. 177
2 -8.930sp|O95072|REC8_HUMAN Meiotic recombination protein REC8 homolog OS=Homo sapiens GN=REC8 PE=2 SV=1  ali follow..  12  301.....................RRRRLLFWDISPEKFQEQLQTRAHCWECPMVQPPERTIRGPAELFRTPTLSGWLPPERELPEEAAAEEERRKIEVPSEIEVPREALEPSVPLMVSLEISLEAAEEEKSRISLIPPEERWAWPEVEAPEAPALPVVPELPEVPMEMPLVLPPE--LELLSLEAVHRAVALELQANREPDFSSLVSPLSPRRMAARVFYLLLVLSAQQILHVKQEKPYGRLLIQPGPRFH 547
3 -7.530sp|Q08AE8|SPIR1_HUMAN Protein spire homolog 1 OS=Homo sapiens GN=SPIRE1 PE=1 SV=2 (Range: 301-600)  ali follow..  15  1.........YQ-PYEMLMDDIRCKRYTLRKVMVNGDIPP------RLKKSAHEIILDFIRSRPPLNPVSARKLKPTPP------RPRSLHERILEEIKAERKLRPVSP............................................................................................................................................. 88
4 -7.390sp|Q15025|TNIP1_HUMAN TNFAIP3-interacting protein 1 OS=Homo sapiens GN=TNIP1 PE=1 SV=2 (Range: 301-600)  ali follow..  11  3.................VKMLEQQRSELLEV-----NKQWDQHFRSMKQQ----------YEQKITELRQKLADLQKQVTDLEAEREQKQRDFDRKLLLAKSKIEMEETDKEQLTAEAKELRQKVKYLQDQLSPLTRQREYQEKEIQRLNKALEEALSIQTPPSSPPTAFGSPEGAGALLRKQELVTQNELLKQQVKIFEEDFQRERSDRERMNEEKEELKKQVEKLQAQV.................. 201
5 -7.320sp|Q15003|CND2_HUMAN Condensin complex subunit 2 OS=Homo sapiens GN=NCAPH PE=1 SV=3 (Range: 451-741)  ali follow..  11  190.............................................................................................................................................KKMDMKKLKQSMWSLLTALSGKEADAEANHREAGKEAALAEVA-----------DEKMLSGLTKDMAQNLSIPLAFACLLHLANEKNLKLEGTEDLSDVLVRQGD... 291
6 -6.980sp|O00507|USP9Y_HUMAN Probable ubiquitin carboxyl-terminal hydrolase FAF-Y OS=Homo sapiens GN=USP9Y PE=1 SV=2 (Range: 751-1050)  ali follow..  14  11.SYMMDDLELIG-LDYLWRVVIQSSDEIANRAIDLLKEIYTNLGPRLKANQVVIHEDFIQSCFDRLKASYDTLCVFDGDKNSINCARQEAIRMVRVLTVIKEYINECD............................................................................................................................................. 116
7 -6.960sp|Q4ADV7|RIC1_HUMAN Protein RIC1 homolog OS=Homo sapiens GN=KIAA1432 PE=1 SV=2 (Range: 901-1200)  ali follow..  1................VVHCARKTEYALWNYLFAAVGNPKDLFEECLMAQDLDTAASYLIILQNMEVPAVSRLFNTALEQGK---------DLCRHMIRFKAIGSGESETPPSTPTAQEPSSSGGFEFFRNRSISLSQSAENVPASKFSLQKTLSMPSGPSGKRWSKDSDCAENMYIDMMLWRHARRLLECFAAQLGFELISWLCKERTRAARVDNFVIALKRLHKD...................... 217
8 -6.890sp|Q93008|USP9X_HUMAN Probable ubiquitin carboxyl-terminal hydrolase FAF-X OS=Homo sapiens GN=USP9X PE=1 SV=3 (Range: 751-1050)  ali follow..  13  10.AYMMDDLELIG-LDYLWRVVIQSNDDIASRAIDLLKEIYTNLGPRLQVNQVVIHEDFIQSCFDRLKASYDTLCVLDGDKDSVNCARQEAVRMVRVLTVLREYINECD............................................................................................................................................. 115
9 -6.870sp|Q7Z3D6|CN159_HUMAN UPF0317 protein C14orf159, mitochondrial OS=Homo sapiens GN=C14orf159 PE=2 SV=2 (Range: 451-616)  ali follow..  13  1....MNIKHLVDPIDDLFLAAKKIPTGVGDLGMGKVKEAVRRHIRHGDVIACDVEADFAVLACALYILYSCAVHSQYLRKAVGPSRAPGDQAWTQALPSVIKEEKMLGILVQ......................................................................................................................................... 127
10 -6.860sp|Q96AJ1|CLUA1_HUMAN Clusterin-associated protein 1 OS=Homo sapiens GN=CLUAP1 PE=1 SV=4  ali follow..  16  22....ISMENFRTP-EVLLWLVKRYEPQT-DIPPDVDTEQFIKAIKKLYQADGYAVKELLKITSVLY--NAMKTKGMEGSEIVEEDVNKFKFDLGSKIADLKAARQLASEITSKGASLYDLLGMEVELREMRTEAIA-----RPLEINETEKVMRIAIKEILTQVQKTKDLLNNVASDEANLEAKIEKRKLELERNRK--------RLETLQSVRPCFMDEYEKTEEELQKQYDT............... 258

FFAS is supported by the NIH grant R01-GM087218-01
1 3 1 9 1 3   jobs submitted since Jan 1, 2011
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Ye Y, Godzik A. Database searching by flexible protein structure alignment. Protein Sci. 2004 Jul;13(7):1841-50.