current user: public

Please be advised that we have recently moved our server to a new location. We tried our best to fully test all functions on the website, but if something does not work for you please let us know.

Query: gi|15895531|ref|NP_348880.1| ATP-dependent exonuclease synthesis protein AddB (CA_C2263) [Clostridium acetobutylicum ATCC 824] (Range: 251-750), from C.acetobutylicum

Results of FFAS03 search in H.sapiens
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
    .   10    .   20    .   30    .   40    .   50    .   60    .   70    .   80    .   90    .  100    .  110    .  120    .  130    .  140    .  150    .  160    .  170    .  180    .  190    .  200    .  210    .  220    .  230    .  240    .  250    .  260    .  270    .  280    .  290    .  300    .  310    .  320    .  330    .  340    .  350    .  360    .  370    .  380    .  390    .  400    .  410    .  420    .  430    .  440    .  450    .  460    .  470    .  480    .  490    .  500
# Score Template Links and tools%idFirst RLLKLAENNNISIEKPINLNGRPFYRFKNSPELSFLEKNLYSFPYEIYKKGPDKIEIFKTSNLYTEVEKIARNIIEFVREDNVRFSDIAVVTGDLGSYEKTVSVIFKEYRIPFFIDRNKDIEDNTLIILIKSIIDIFVKNWSYETVFRYLKTGFADIEPDEIDILENYVLAAGIKGKKKWTEEEWTYNVYGDALEGDISEESKEKLSKVNEIKNRFLRPILNFRERVLRRNNVAEICRALFEFLYDINVPEAVEKMVNEFRESGRQILANEYSQIWNIIIELMDQLVEVMGNEKVNLEQFSRILFIGIKEHKMGLIPSSLDQVLVGSIDRLKSHAIKILYIIGVNDGVFPSAAMEEGILSDRDREILNSKGVELAKDTKTQAMEQRFLVYTAITNSKEYLFLSYPIADYEGKTLRPSLIVNRVKTLFPKIVEKSDVIKIENDEESMKLISATVPTFNEMISSFRKEIDGEGEVSSIWHDVYRWYSKSDEWTGKCNNMFKALast
1 -12.700sp|Q8NFZ0|FBX18_HUMAN F-box only protein 18 OS=Homo sapiens GN=FBXO18 PE=1 SV=2 (Range: 751-1043)  ali follow..  11  13......................................................................................................................................................................................................EGEFPSRIHLIGGIKSFGLDRIIDIWILLQPEEERRKQNLVIKDFIRRWVHKEGFSGFKRYVTAAEDKELEAKIAVVEKYNIRIPELVQRIEKCHIEDLDF---------------------AEYILGTVHKAKGLEFDTVHVLDDFVKVPCARHNLPQLPHFRVESFSED---------------EWNLLYVAVTRAKKRLIMTKSLENLAGEYFLQAELTSNVLK........................................................................... 207
2 -9.970sp|Q7Z7L1|SLN11_HUMAN Schlafen family member 11 OS=Homo sapiens GN=SLFN11 PE=1 SV=2 (Range: 751-901)  ali follow..  10  34..........................................................................................................................................................................................................................................................................TVEQIMTCVADTCRRFFDR-VAVLVSTAKEVEHYKYELLKAMRKKRVDACDMLGDHIVLDSVRRFSGLERSIVFGIHPRT---------------------------------ADPAILPNVLICLASRAKQHLYIFPWGGH............................................................................................ 151
3 -8.460sp|Q9NWS1|CL048_HUMAN UPF0419 protein C12orf48 OS=Homo sapiens GN=C12orf48 PE=2 SV=3  ali follow..  93....................................................KIYDDFLKNSNMLDLIDVYQKCRALTSNNTVSPSQLLDFLSGKQYAVGDETDLSIPTSPTSKYNRDNEKVQLLARKIIFSYLNLLVNSKNDLAVAYILNIPDRGLGREAFTDLKHAAREKQMS----------------------LVATSFIRTIELGG-KGYAPPPSDPLRTHVKGLSNFINFIDKLDEILGEIPNPSIAGGQILSVIKMQLIKGQNSRDPFCKAIEEVAQDLDL-------RIKNIINSQEGVVALSTTDISPARPKSHAINHGTAYCGRDTVKALLVLLDEEAANAPTKNKAELLYDEENTIHHHGTSIRERICVSMQEKKIKMKQTLIRSQFACTYKDDYMISKDNWNNVNLASKPL............................................................................. 456
4 -8.090sp|P0C7P3|SLN14_HUMAN Schlafen family member 14 OS=Homo sapiens GN=SLFN14 PE=2 SV=2 (Range: 751-912)  ali follow..  40..........................................................................................................................................................................................................................................................................TTEQIANYVARKCHSLFQC-IAILCRRGEDRGRYRLALLKAMELIETPATGVWGSHIVLDSIQQFSGLERTVVFGLSPEC-----------------------------------DQSEEFHKLCFASRAIKHLYLLYEKRAA........................................................................................... 161
5 -7.020sp|Q68D06|SLN13_HUMAN Schlafen family member 13 OS=Homo sapiens GN=SLFN13 PE=2 SV=1 (Range: 601-897)  ali follow..  8......................................................MAMKIMEKIRNVFHCEAHRILYVCENQPLRNFISDRNICRAETRETFLREKFEHIQ--IVIDEAQNFRTE--GDWYRKAKTITQREKDCPGVLWIFLDYFQTSHLGHSAQYPREELTRVVRNAD----------------------------------------EIAEYIQQEMQLIIENPPINIPHGYLAILSEAKWVPGVPGNTKIIKNFTLEQIVTYVADTCRCFFER-VAVLVSTVTEVEQYQSKLLKAMRKKMVDACDMLGVHIVLDSVRRFSGLERSIVFGIHPRT---------------------------------ADPAILPNILICLASRAKQHLYIFL................................................................................................ 297
6 -6.970sp|Q7Z7L1|SLN11_HUMAN Schlafen family member 11 OS=Homo sapiens GN=SLFN11 PE=1 SV=2 (Range: 601-900)  ali follow..  5.................................................................KTIMAMKIMEKIRNVFHCEAHRILYVC-----ENQPLRNFISDRNICRAETRKTFLREN-----------------HIQHIVIDEAQNFRTEDGDWYGKAKSITRRAKGGPGILWIFLDYFQTSHLDCSGLPPLSDQYPREELTRIVRNA--DPIAKYLQKEMQVIRSNPSFNIPTGCLEVFPEAEWSQGVQGTLRIKKYLTVEQIMTCVADTCRRFFDR-VAVLVSTAKEVEHYKYELLKAMRKKRVVQLSDACDHIVLDSVRRFSGLERSIVFGIHPRT---------------------------------ADPAILPNVLICLASRAKQHLYIFPWGG............................................................................................. 300
7 -6.600sp|Q6ICB0|PPDE2_HUMAN PPPDE peptidase domain-containing protein 2 OS=Homo sapiens GN=PPPDE2 PE=1 SV=1  ali follow..  10  70....................................................SVVDVGSTEVTEEIFLEYLSSL----GESLFRGEAYNLFEHNCNTFSNEVAQFLTGRKIPSYITDPSEVLSTPFGQALRPLLD............................................................................................................................................................................................................................................................................................................................................................................. 149
8 -6.540sp|Q08AF3|SLFN5_HUMAN Schlafen family member 5 OS=Homo sapiens GN=SLFN5 PE=1 SV=1 (Range: 601-891)  ali follow..  4.....................................................................................ANILYIC-----ENQPLKKLVSF-------------SKKNICQPVTRKTFMKNNFEHIQHIIIDDAQNFRTEDGDWYGKAKFITQTARDGPGVLWIFLDYFQTYHLSCSGLPPPSDQYPREEINRVVRNA--GPIANYLQQVMQEARQNPPPNLPPGSLVMLYEPKWAQGVPGNLEIIEDLNLEEILIYVANKCRFLLRN-IAVLFTKASEVEKYKDRLLTAMRKRKLSQLHEESDHIVLDSVCRFSGLERNIVFGINPGV---------------------------------APPAGAYNLLLCLASRAKRHLYILKASV............................................................................................. 291
9 -6.080sp|Q9H3R1|NDST4_HUMAN(removed signalp:1-29) Bifunctional heparan sulfate N-deacetylase/N-sulfotransferase 4 OS=Homo sapiens GN=NDST4 PE=2 SV=1 (Range: 1-300)  ali follow..  10  4.......................................LYSGYKQEMTLIETTAEAECTDIKILPYRSMELKTVKPIDTSKTDPTVLLFVESQYSQLGQDIIAILESSRFQYHMVIAPGKGDIPPLT---------NGKGKYTLVIYENILKYVSMDSWNRELLEKYCVEYSVSIIGFHKANENSLPSTQLK-GFPLNLFNNLALKDCFVNPQSPLLHITKAPKVEKGPLPGEDWTI----FQYNHSTYQPVLLTELQTEKSLSSLSSKTLFATVIQDLGLHDGIQRVLFGNNLNFWLHKLIFIDAISFLSGKRILVDIDDIFVGK-EGTRMNVKDVKALL.............................................................................................................................................................. 300
10 -6.060sp|O95803|NDST3_HUMAN(removed signalp:1-30) Bifunctional heparan sulfate N-deacetylase/N-sulfotransferase 3 OS=Homo sapiens GN=NDST3 PE=2 SV=1 (Range: 1-300)  ali follow..  10  3.......................................LYSGYKQENELSETASEVDCGDLQHLPYQLMEVKAMKLFDASRTDPTVLVFVESQYSSLGQDIIMILESSRFQYHIEIAPGKGDLPVLI---------KMKGKYILIIYENILKYINMDSWNRSLLDKYCVEYGVGSVQSFQLKGFPFSIYGNLAVKDCCINPHSPLIRVTKSSKLEKGSLPGTDWTVFQINHSAYQPVIFAKVKTPENLSPSISKGAFYATIIHDLGLHDGIQRV------LFGNNLNFWLHKLIFIDAISFLSGKRLTLSLDRYILVDIDDIFVGK-EGTRMNTNDVKALL.............................................................................................................................................................. 300

FFAS is supported by the NIH grant R01-GM087218-01
1 3 1 9 1 3   jobs submitted since Jan 1, 2011
Comments and questions to: webmaster

Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Pawlowski K, Pio F, Chu Z, Reed JC, Godzik A. PAAD - a new protein domain associated with apoptosis, cancer and autoimmune diseases. Trends Biochem Sci. 2001 Feb;26(2):85-7.