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Query: [J] COG0016 Phenylalanyl-tRNA synthetase alpha subunit, from COG0516

Results of FFAS03 search in HGM_OVER
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MREQLEALRDDAIKKIEQAQEKKVVQEIRVKYLGKKGPVTEVLRGMGKLSPEERPVIGQLANDVREAIGKAIESKMEALEQAEIHRKLQEETIDVTLPGRPVLKGGAHPLTATITEVEDLFIGLGFSVAEGPQIETDYYNFEALNLPKDHPARDMQDSFYFTDELLLRTQTSPVQARTMEKYKGKGPIKIICPGKVFRRDDDDATHSHQFMQIEGLYVDHGVRMSDLKGVLQAFAKSFFGEERSIRLRPSFFPFTEPSVEVDVSCGICHGDGCRVCKQTGWIEILGAGMVHPRVLEMSGFNPNEYSGFAFGMGVERLSMLKYGIDDIRHFYTNDRRFLAQFKRVLast
1 -2.870PB044822 Q89ZL7_BACTN/1-147 PB044822; Pfam-B_44822;  ali follow..  13  7SLSTIESAIQKAAGKYVCGCDQTAVTDIHLQPDQTSGQLTIYNDDDEELA---NVMIEEWATYDGDDFMENVKPNLKST--CRMKDAGDFDKVTILKPYSFVLVDEDKETVAELLLIDDDTLLVDDELLKGLDKELDEFLKNLLE....................................................................................................................................................................................................... 147
2 -2.700HGC00683 gi|163310582|dbj|BABD01000118.1|4.0 TMP00861;  ali follow..  12  31.............................................................LTPSEEVVNAFQQKYPDVKNVKWEILVGAYEAEFIYSGTYSENGQHIVLDKVEAQA--YITQGGKWVRSEFDVTKDYQDSSSLVVPRAVRETIAAKGKKVDDVKLFDWSDRNDYFY-VEFDEPDSELLINFDGTLY................................................................................................................................................... 163
3 -2.540PB000119 Q6KIT1_MYCMO/1-381 PB000119; Pfam-B_119;  ali follow..  16  217.....................................................................................................................NSTFLNLA-TIRPNPNPNNEIFNFDLNNLPIENGLLTVEAIWFLQSKMEL-TDTATV---------------IIINNTAYVNINKNSVKHNNF-AVNYLKSEENLTGRDFP-LLGLFVEKFFKDDVEV------------SPKIPALYFVVNNSTKNIFSSVG---ISSLSTNNPKLIFTFTFD----NGFS................................... 381
4 -2.350PB162020 _JGI.0344610_ 2004040329 [Human Gut Community Subject 8]  ali follow..  10  84..RTLKDYAVSSFAEKAEKLKYKKYEQAEKSASVWKRRFEALNEKYLELKKKAQPYLDALASEKVRAFLDAVLARGKETRELKIPARKRGQDM........................................................................................................................................................................................................................................................... 177
5 -2.270PB031792 gi|154174791|ref|YP_001409041.1| flavodoxin family protein [Campylobacter curvus 525.92]gi|112804021|gb|EAU01365.1| flavodoxin family protein [Campylobacter curvus 525.92]  ali follow..  12  6.........................................................GGPEAHFKRYIKEHVKGKKTGLPAGEHGESMLKVGRELLNEGGNEILAEFICQGAIDPKVIEEMKEMAAKMGDKAIHLITPERQATWKQASTHP--DEND........................................................................................................................................................................................... 110
6 -2.250PB045072 _Gut.Meta.Jp.0111663_ gi|163310555|dbj|BABD01000145.1||3 (+ 1662:2028~0 complete)  ali follow..  32.KWDGTINKAKLTKYLQSSQQNEQVASICDYFQEQ-------MKVANSSKKNSDQKVRNAVYGNLKLMKNTLTEKQYSDYLRLMALTLRNKGID.......................................................................................................................................................................................................................................................... 118
7 -2.130HGC00166 gi|163579340|dbj|BABE01005762.1|1.0 TMP00473;  ali follow..  4.HKEVSALLQQAKQERRCCYGTSDAQRRALKRRLHAGELVSPYKNLNTMTREQQSLQVIRALSAIHPQWVFAGLSAACVYGLQHNYSLHDGTVHIASKSGIGGGDEARLNRIYINRIPTRKHN-GILLTTPARTLLD--------------VFPFPQALPIYDSALRKSLTTIEEVQSLMIQSVCDEVSV----TKLLKYANPLSENGGESLMRGQITELSFGSSCWQCS.................................................................................................................. 222
8 -2.090HGC00787 gi|162657578|dbj|BAAX01002027.1|2.0 TMP01033;  ali follow..  11  10........................................................LLQQRTLLQIEYYTEKEAFRKQTEQMGMQRKVKRGDAWFPLRIGKSFYNSLNQNAIEVFRTEDQDIEHNFEFGRPVMFFKAGETKTAQTDGKTEKKMLKYFSF---TGTVSYVDGDRMVI-TVPDSAPLLELQQADVPVGVQLSFDETSYKMMFDALDRTMKAKNNRLAYLRDLFYSHRKAERYSFEPMRF................................................................................................. 196
9 -1.960PB202086 Q8G498_BIFLO/2-200 PB202086; Pfam-B_202086;  ali follow..  11  109..ESLGKELKASAPEYEVAENAQGLDAAAVKLNEQADWYETHEKSLSKVRAVVESKAAKRLDDAKTNLTAKLDEASKLLADS--DGKVADNA............................................................................................................................................................................................................................................................ 199
10 -1.870HGC00311 gi|163635536|dbj|BABG01000737.1|2.0 TMP00178;  ali follow..  22  8..EQLRAEKEQVETQLAQEQHKLKRLENRKKYLEKGGTIESLAPEFKDLTRTEMTELMEYIPEVQRAVRHMAITHINQASRGK..................................................................................................................................................................................................................................................................... 104

FFAS is supported by the NIH grant R01-GM087218-01
1 2 4 5 2 3   jobs submitted since Jan 1, 2011
Comments and questions to: webmaster

Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Grynberg M, Godzik A. NERD: a DNA processing-related domain present in the anthrax virulence plasmid, pXO1. Trends Biochem Sci. 2004 Mar;29(3):106-10.