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Query: [J] COG0016 Phenylalanyl-tRNA synthetase alpha subunit, from COG1018

Results of FFAS03 search in HGM_OVER
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MREQLEALRDDAIKKIEQAQEKKVVQEIRVKYLGKKGPVTEVLRGMGKLSPEERPVIGQLANDVREAIGKAIESKMEALEQAEIHRKLQEETIDVTLPGRPVLKGGAHPLTATITEVEDLFIGLGFSVAEGPQIETDYYNFEALNLPKDHPARDMQDSFYFTDELLLRTQTSPVQARTMEKYKGKGPIKIICPGKVFRRDDDDATHSHQFMQIEGLYVDHGVRMSDLKGVLQAFAKSFFGEERSIRLRPSFFPFTEPSVEVDVSCGICHGDGCRVCKQTGWIEILGAGMVHPRVLEMSGFNPNEYSGFAFGMGVERLSMLKYGIDDIRHFYTNDRRFLAQFKRVLast
1 -3.760PB047024 _Gut.Meta.Jp.0098985_ gi|162869273|dbj|BABB01000734.1||6 (+ 5047:5650~0 complete)  ali follow..  30........................................................................................................GLLHDMSKYSPTEFLVGCRYYKGYMSPNNAERADRGYSS----LHHKGRNKHHEYWIDYAVSKPGDDKTHTKMEGMKMPIRYVCEMFSASKNYQKEKYTDKSALEYYEKSVDHYMIHPDTKAMLEYLLVMLSVKGEEYTYSYIKKEVLKGHIP....................................................................................... 185
2 -3.160PB044572 Q8A533_BACTN/1-343 PB044572; Pfam-B_44572;  ali follow..  11  86.............................................................................................................MECLPIKDTYIALYKGDRVVVAEFAIHPADSVDSVWVK----AHTQEEQGWIRETELKESFVPTDSISQAIHFFSDTHASYFMI-RAFRRKQLQLVYFNDIDSVYPLFLCLLMAFATVYESMQVFVPDTW---EHFYFNPTLSPFKVPFI-------------LSVFLLSIWLFL----IVALAVLDDLFRQLTPAAAVFYLLGLMSSCIFCYFFFILMTHIYIGYLFLAFF... 305
3 -2.260HGC00573 gi|163306732|dbj|BABD01003960.1|2.0 TMP00669;  ali follow..  10  24FWMAGLELGVIKTNQRDEASPKEVCSGIPQFIIGVKGLAGFLGTSVSTVNRWKACQCGKVVIFELPKVIEILRVSDKKNKFNVKSKKYNGKESN.......................................................................................................................................................................................................................................................... 125
4 -2.180PB000821 Q82P27_STRAW/1-209 PB000821; Pfam-B_821;  ali follow..  11  95.SRDIETIAHRVSGRFGREVSADNVRYLIEQKLDPLGVTVPEGREEEDISAPRSDLLLALKGHRVIFNERRVATIAGAL......................................................................................................................................................................................................................................................................... 172
5 -2.020PB002770 Q744K2_MYCPA/1-559 PB002770; Pfam-B_2770;  ali follow..  2......TMQGDAQCVRGNRNTAWPLAARLFPAMFALLMLVIAGTGSAAAQPSPWTARPFGDRLVGWDTYRRLDLLPYLSADTQSLQLSSFDRSGGDFDISTGNKNGTGGCLAPGGAGCVIA------EDHGAGEVDSIW----LTRDGGNLRAIGNIRVELDGQTVLDTLGAPFVWPLVANAGESPGGDYIKVPMPYRRSRISVESHLEYYHVDYRQFPTAEGVSTFSPADPAVDVLDRFRAAGTVDPKPAAPGEVHSNR---------VIELPGGAEQTIAESTGPASISALRLYLPAPADQSLTGLRLRIEFDGRTTVDSPLGEF................. 313
6 -1.970PB202086 Q8G498_BIFLO/2-200 PB202086; Pfam-B_202086;  ali follow..  12  73.ADTVRNNANEYNALLNG--DAADAAAVKAEQVKDSKTVESLGKELKASAPEYEGCVAENAQGLDAAAVK-LNEQADWYETHEKSLSKAVRAVVESKAAKRLDDAKTN-LTAKLDEASKLLADSDGKVAD...................................................................................................................................................................................................................... 197
7 -1.920HGC00683 gi|163310582|dbj|BABD01000118.1|4.0 TMP00861;  ali follow..  12  31.............................................................LTPSEEVVNAFQQKYPDVKNVKWEILVGAYEAEFIYSGTYSENGQHIVLDKVEAQA--YITQGGKWVRSEFDVTKDYQDSSSLVVPRAVRETIAAKGKKVDDVKLFDWSDRNDYFYV-EFDEPDSELLINFDGTLY................................................................................................................................................... 163
8 -1.910PB005346 A0R807_PELPD/1-258 PB005346; Pfam-B_5346;  ali follow..  3.............................................................................................................................................DSLF------AIDIKNQFHHNWMGMSQINQTTSGNFYSHRNITDQVLENFTDALDCLTAHLMLECSEVLAGVKSIVNRTRPCGRNLYLLWQQHHTDLAQRLNNLNFMV--LQSRQQSLLLLCYDHVRLEHHLSHPGIRTLLHKAGDDADCEGMLLELRSRIGGNNSFPHEIGL----FIGYPAKDVAAFMGLV.......... 191
9 -1.910PB001025 Q1QFV3_NITHX/1-288 PB001025; Pfam-B_1025;  ali follow..  13  15MKSDSPDLKTAMLGRIRADEPRKVWTPSDFVDLASRDAVDKTLQRLTKAEALRRIDRGLYDQPGFNKLTQKPNPPDPRSVIDAVGRRDQTRML........................................................................................................................................................................................................................................................... 107
10 -1.830PB027778 Q5LHJ0_BACFN/1-110 PB027778; Pfam-B_27778;  ali follow..  12  47.......................................................................................................................................................................................................................................................................................EYYSESGILDVQPDADGYVDIDLEQVVEFIVK--AKKDEVGEYDPEDILFVVQGEMEYGNSLGQV 110

FFAS is supported by the NIH grant R01-GM087218-01
1 2 5 9 6 3   jobs submitted since Jan 1, 2011
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Friedberg I. and Godzik A Connecting the Protein Structure Universe by Using Sparse Recurring Fragments. Structure (Camb.) (2005) Aug;13(8):1213-24