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Query: [J] COG0016 Phenylalanyl-tRNA synthetase alpha subunit, from COG0516

Results of FFAS03 search in JCSG0516
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MREQLEALRDDAIKKIEQAQEKKVVQEIRVKYLGKKGPVTEVLRGMGKLSPEERPVIGQLANDVREAIGKAIESKMEALEQAEIHRKLQEETIDVTLPGRPVLKGGAHPLTATITEVEDLFIGLGFSVAEGPQIETDYYNFEALNLPKDHPARDMQDSFYFTDELLLRTQTSPVQARTMEKYKGKGPIKIICPGKVFRRDDDDATHSHQFMQIEGLYVDHGVRMSDLKGVLQAFAKSFFGEERSIRLRPSFFPFTEPSVEVDVSCGICHGDGCRVCKQTGWIEILGAGMVHPRVLEMSGFNPNEYSGFAFGMGVERLSMLKYGIDDIRHFYTNDRRFLAQFKRVLast
1 -126.000TM0821 TM0821 282691 Purified-2001-04-19  ali follow..  50  2...EIEAVEKEAIEKLSKISNVQELESFRIEFLGKKGKITGLMKNLKNLPPEERPAYGKRVNELREKIEKLFEEKRQQIQRILEQEKMEKMRIDVTVPGARRKLGHSHPVLKVMEEIERIFVSMGFDVVEGPEIETTWHNFDALNTPEWHPARDEHDSFYITDDLLLRTHTSPVQIRTMLER--KPPIAIISPGKVYRRD-YDATHLPMFHQVEGLHVDRDLSVAHLKFTLEEFARRMFGEGAKVRLRPSFFPFTEPSFEVDV-----------YLSGYGWLEILGAGMVDPNVFLNVGYDPEEWTGYAFGMGVERIAMLKYGIADIREFVRNDVRFLSSY... 325
2 -7.360SP18237A YP_001304846.1 412677 Selected-2009-11-12  ali follow..  12  38...KLSVGAGISDQIETKSFLDSDVSDLYVFSFKKSTDEFLAAQKYKDLSGTTEQQIFAIANVNYDMFPGLSEQLEEWLTKNPSKSELKSLLADIGGDNAVQFANTTSLVSGLWKILKRVAAKVSFKITVAEGREFHLNSYQVCEVPKQENATLGAMGSYSTPELTISKDIGVVVFYMPENIATGKEGCNTADAREQLSKGSLRRSTPEQREFT---VDKPATYVLLKGSYYEKEGDGKETSAEVVYCVHLGLGAGSGDGVDHTDF-------STNRNTNYIEVRGVNSIMTEV.................................................. 357
3 -6.860SP16767A ZP_01960213.1 407071 Selected-2009-11-12  ali follow..  44ISLPEQTRIATNTRAVSNRVDYSIVNNLNIVLASGNDITKIYYFDESGLTPNDRPEEGDNKRYITIRGEEGDFDQVTEIIDALKQLKQTAADGQPNRANDCMMFGSTKQLTNGTLSLKRTLAMFSVKIDGSELKDGVRIRMSLHNVPKSHELEPGTIPMFMFENL---QGTNENIAIGDQRNKHPKEYTGSTPADLQSFLDGNNGNKYSYILVEAEYYYQDPQNSNKGVQGTIAYRFLLGNNAYNDFRNNYYQVT--------------------------LTLKGNGGANEDG.................................................. 382
4 -6.250SP16644A YP_097639.1 408019 Purified-2010-09-29  ali follow..  21  1.........................................................................................................................................................................................................................MKKFVFIAAVLGFTNVFVAMTQQKNSPIPLHNNGITFTVYEADGSNYCYN-GGRGATSCSISGGIDIKGGGA-------SAACDVSCQTGYYACCGI-RCTCEKY...................... 97
5 -5.950TM1705 TM1705 283562 Purified-2001-10-09  ali follow..  14  87...KADSVGKEKMDLFKRHVKIGDFVGVRFPFKSKTGELTIYVQEYTLLSKALRP----------------LPEKWHGIKD--KEIIYRQRYLELIVNDEAIERFKKR--FKAVRVIREFLNSRGFIEVETPILHYVTGGAEARPFVTHLNVFDIDMYLRIAPELYLKRLIVGGFEKIYE-------------GKNFRNEGISYKHSPEFTSIE-AYADYNDMMDLTEELIVEVVKRTCG-TLKISYQGKEIDFTPPWKRVRMRDFLKEKLGVDILEDP-LRDLVEEELVNPTFIKRHREDPRLTERFELIIFGREIANAFSELND----VDQYQRFLEQAKM. 429
6 -5.900SC.B20939H YP_106745.1 428489 Selected-2013-01-04  ali follow..  21  2..................................................................................................................................................................................................................................................................ATLETPCPNCGGQACTKCEFSISKIPGSRQFEIAEVEELLR-EIGPLSGFRSKMGRPFSAILKLTFDDETKNYKLEFDFGQE.... 92
7 -5.690SP16767C ZP_02031596.1 413032 Selected-2009-11-12  ali follow..  10  48LNIGTPEVPVVETKSLDNGATFGAINDLAVLVYDEKGENPIVTFHDVEGENQTKHKIYVLANVGSEDAAKEYTTEQALLSKQIESQEPMGTEMMLGFVAKDDITGDASFAAKVVPPYSKITFKITKDLPSDKHVYLAITEVNVRHLPVEVDGLATGRDFYMYENLQGENNINNDDPSLKTPVGLEVPTIGDGKIDYTEWFKKWSSVPCTYIEVKGNYTIFTSEPGVNHVGDGEINYRFFGENSTSDFRNTHYNVT--------------------------LAFTGLAGKNELQYE................................................ 383
8 -5.630SP2694D ZP_01959612.1 407027 Purified-2010-09-29  ali follow..  14  23........................................................................................................................YDANGNLTKDLNKIVDIQYNS--LNLPSRIVFKNGDNISHV--------SADGSKLRTVWVADGDTLTTDYCGNVIYENGVPVRLMTD-----VGYIALSDTSIKDHQGNV----RVVADEHGNAEEVNDYYAF-STSSRQSVQPYKYNGKELETACGVNWYD-YGARRYDPVLGRWNGVDP--------------LCEDYYSENPYGYCGNNPVNYVD..... 216
9 -5.630GE15673A YP_754847.1 396839 Purified-2009-04-17  ali follow..  13  8.................................................................................................................VKNYSDLSTNKGFQFEFYCDRCGSGYRTRFKPSITGTVTGVLDTAGSLLGGLFSSAADVSERVRSASWEKSH--------DDAFEDACNELKPDFIQCPRCSSWVCRQKCWNKKKGLCKECAPDLGVEHAAMAEEDKKLGLENWRENVRASCPECEAKFCPEC---------GAKLKAAQFCPSCGAKVNPGSKFCAECGEK............................. 213
10 -5.280SP18759D NP_816849.1 410799 Selected-2009-11-12  ali follow..  10  1....MKQTKWQRLATIGLCSSL---------VINAFSGVTAVAETVESSAKEETQASSVKEETTKASTENSQVTTDTSQEEATKEAEKEEPQAEVEQAETPIIPKPKKINMKATYSFSAETYQFGFVNESGQLINPDIIPITSIRIPKYYASASLYNREGKIDSTYYTPRETFFGGDPAGVKFTNFLYRINDFDVKGNNIGYKTVSSPIYYHLTNRRVTEN--FVDTSGA-KITPPSNFTQGKQTVINSDPYTFQQSGFLPET--YKVGTK---SYRFKGWYK----GKTKTEPLATT----------SYKVTYD-------DNDDLTVVYEE........... 394

FFAS is supported by the NIH grant R01-GM087218-01
1 2 4 5 2 3   jobs submitted since Jan 1, 2011
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Grynberg M, Godzik A. NERD: a DNA processing-related domain present in the anthrax virulence plasmid, pXO1. Trends Biochem Sci. 2004 Mar;29(3):106-10.