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Query: [J] COG0016 Phenylalanyl-tRNA synthetase alpha subunit, from COG0516

Results of FFAS03 search in NEW_HUMAN_DOMAINS
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MREQLEALRDDAIKKIEQAQEKKVVQEIRVKYLGKKGPVTEVLRGMGKLSPEERPVIGQLANDVREAIGKAIESKMEALEQAEIHRKLQEETIDVTLPGRPVLKGGAHPLTATITEVEDLFIGLGFSVAEGPQIETDYYNFEALNLPKDHPARDMQDSFYFTDELLLRTQTSPVQARTMEKYKGKGPIKIICPGKVFRRDDDDATHSHQFMQIEGLYVDHGVRMSDLKGVLQAFAKSFFGEERSIRLRPSFFPFTEPSVEVDVSCGICHGDGCRVCKQTGWIEILGAGMVHPRVLEMSGFNPNEYSGFAFGMGVERLSMLKYGIDDIRHFYTNDRRFLAQFKRVLast
1 -5.000sp|Q5BN46|CI116_HUMAN UPF0691 protein C9orf116 OS=Homo sapiens GN=C9orf116 PE=2 SV=1 (Range: 21-136)  ali follow..  14  1...................................................................................................................................PERTSDYYRVSA-DLPGRFNNPGWFRGYRTQKAVSVYRTSN-------QAYGSRAPTVHEMPKVFYPNSNKFSQQLAAGGMFRNNTLNVYLEKSIVTGPDNCITSC------RLNFHPSYNI-NRPS...................................................................................... 113
2 -4.440sp|Q9BRP7|FDXA1_HUMAN Ferredoxin-fold anticodon-binding domain-containing protein 1 OS=Homo sapiens GN=FDXACB1 PE=2 SV=3 (Range: 341-413)  ali follow..  16  2.................................................................................................................................................................QAKICLRPSLLVHVQDVIEVPDFLSGSLHILSGPVFQKCHILPFTMPAFHET--LGVNQNLKDGCLQSLLD................................................................................................................ 73
3 -4.410sp|Q96RR1|PEO1_HUMAN Twinkle protein, mitochondrial OS=Homo sapiens GN=PEO1 PE=1 SV=1 (Range: 1-120)  ali follow..  11  12........................................................................................................................................................................RILLPLRGEWMGRRGLPRNLAPGPPRRRYRKETLQALDMPV----------LPVTATEIRQYL----------------RGHGIPFQDGHSCLRALSPFAESSQCMTSLAEG................................................................ 120
4 -4.350sp|Q8N865|CG031_HUMAN Uncharacterized protein C7orf31 OS=Homo sapiens GN=C7orf31 PE=2 SV=3 (Range: 1-300)  ali follow..  13  1.....................MEVIHGRPYCCRELEGALSNTFYSNELHNPLQTVTRPTASEDRYQELRESLQQCRLPWGAERIPISLPEDHRPKYEPPRVMGKGHQHYGFGGETWPRKLPVEQFYYLTQ--KKSDVYGNDSLIPKPPNSTVGEICLPYHICRGAMFPTFTSPEDLYTGIKARTQQPFPPTVPTKAYDSTVLKTRGNPYRYELIDIPMDSKKKALTWPGQGVYYDFPRGVEKNKPVFYPKPPKTFAPNTSLNSWDPICSAKEANIQRNL-WLDFTGLGPMDPLELD................................................ 297
5 -4.320sp|Q14687|GSE1_HUMAN Genetic suppressor element 1 OS=Homo sapiens GN=GSE1 PE=1 SV=3 (Range: 212-309)  ali follow..  19  18.....................................................................................................................DDLRMSSLPPLGLDPATAAAYYHPSYLAPHPPHPAFRMDDSYCLSA---LRSPFYPIPTPGSLPPLHPSAMHLHLSGVRYPPE................................................................................................................................................ 98
6 -4.210sp|Q9ULL8|SHRM4_HUMAN Protein Shroom4 OS=Homo sapiens GN=SHROOM4 PE=1 SV=3 (Range: 858-940)  ali follow..  14  26......................................................................................................................................................................................................................................................HRTCSYSCSVQGALVHDPCIYCSGEICPALLKRNMMPNCYNCRCHHH................................................... 72
7 -4.110sp|Q68D51|DEN2C_HUMAN DENN domain-containing protein 2C OS=Homo sapiens GN=DENND2C PE=2 SV=2 (Range: 106-163)  ali follow..  22  1.....................................................................................................................................................HFFKNESESNWV---------CSRVKEIESCKEDVLDPETSLPPGNFY-------TSQILWKKIEALPPDKLLN......................................................................................................................... 58
8 -3.930sp|P42694|HELZ_HUMAN Probable helicase with zinc finger domain OS=Homo sapiens GN=HELZ PE=1 SV=2 (Range: 1139-1256)  ali follow..  16  27....................................................................................................PPPLGPHPNLGKSPSPVQRIDPHTGTSILYVPAV---YGGNVVMSVPLPVPWTGYQGRFAVDPRIITHQAAMAYNMNLLQTHGRGSPI............................................................................................................................................................ 111
9 -3.910sp|P07949|RET_HUMAN Proto-oncogene tyrosine-protein kinase receptor Ret OS=Homo sapiens GN=RET PE=1 SV=3 (Range: 1056-1114)  ali follow..  23  2.....................................................................................................................................IENKLYGMSDPNWPGESPGTNTGFPRYPNDSVYANWMLSPSAAKLMDTFDS................................................................................................................................................................ 59
10 -3.900sp|Q9NRJ4|TULP4_HUMAN Tubby-related protein 4 OS=Homo sapiens GN=TULP4 PE=2 SV=2 (Range: 647-767)  ali follow..  15  3...........................................................................................................................................SMDYINLPVFNP-----NVFSEDEDDLPVTGASGVP-------ENSPPCTVNIPIAPIHSSAQAMSPTQSIGLVQSLLANQNVQLDVLTNQTTAVGTAEHAGDSATQY-PVSNRYSNPGQVI................................................................................... 111

FFAS is supported by the NIH grant R01-GM087218-01
1 2 4 5 2 3   jobs submitted since Jan 1, 2011
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Grynberg M, Godzik A. NERD: a DNA processing-related domain present in the anthrax virulence plasmid, pXO1. Trends Biochem Sci. 2004 Mar;29(3):106-10.