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Query: [P] COG0004 Ammonia permease, from COG1018

Results of FFAS03 search in PDB1018
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MFQKILIIGVSTLLLLTSPIMGNAWAQVPGTTPPADTGDTAFMLISAALVLLMTPGLAFFYGGFVRSRNILNTLMMSFVLMAIVGVTWVLWGYSLSFAPGLPFIGGLQWFGLNGVGLETTGYLQGSEPANVVSYAGTIPHQAYMIYQAMFAIITPALISGAIAERMSFRAYCLFVLLWSTFIYTPLAHMVWAKGGFLGLYGGLGALDFAGGTVVHISSGVSALVAAIVLGPRKTHPDRLSPPHNVTFILLGAGLLWFGWFGFNAGSALSVASSTSGSFITNPATTAFVATNTSAAAGALMWLILEGVLRGKPTAVGAATGAVAGLVGITPAAGFVTPLASILIGFITAFVCFYAVSFKHKLNVDDALDTYPVHGVGGTVGAILTAFFATAEVNSGGKNGVLKGNFGELGVELAAIVIAYVIAAVGTWIILKIIDATVGLRVKEEAEYQGLDISEHGEEAYNSEFSDRIVPLast
1 -116.0005aid_A mol:protein length:448 MEP2  ali model follow..  32  1............MSGQFTGTGTGGDVFKVDLNEQFDRADMVWIGTASVLVWIMIPGVGLLYSGISRKKHALSLMWAALMAACVAAFQWFWWGYSLVFAHNGSVFLGTLQNFCLK------------DVLGAPSIVKTVPDILFCLYQGMFAAVTAILMAGAGCERARLGPMMVFLFIWLTVVYCPIAYWTWGGNGW---LVSLGALDFAGGGPVHENSGFAALAYSLWLGKRHDPVAKKYKPHSVSSIVMGTIFLWFGWYGFNGGSTGNSSM---------RSWYACVNTNLAAATGGLTWMLVDFRTGGKWSTVGLCMGAIAGLVGITPAAGYVPVYTSVIFGIVPAIICNFAVDLKDLLQIDDGMDVWALHGVGGFVGNFMTGLFAADYVATEIDGGWMNHHWKQLGYQLAGSCAVAAWSFTVTSIILLAMDRILRIRLHEDEEMLGTDLAQIGEYAYYADDDPE... 442
2 -115.0002nmr_A mol:protein length:424 Ammonia channel  ali model follow..  43  1..............................APAVADKADNAFMMICTALVLFMTPGIALFYGGLIRGKNVLSMLTQVTVTFALVCILWVVYGYSLAFGEGNNFFGNINWLMLKNI--------------ELTAVMGSIYQYIHVAFQGSFACITVGLIVGALAERIRFSAVLIFVVVWLTLSYIPIAHMVWGG----GLLASHGALDFAGGTVVHINAAIAGLVGAYLIGKRVGFGKEAFKPHNLPMVFTGTAILYIGWFGFNAGSAGTANE---------IAALAFVNTVVATAAAILGWIFGEWALRGKPSLLGACSGAIAGLVGVTPACGYIGVGGALIIGVVAGLAGLWGVTLKRLLRVDDPCDVFGVHGVCGIVGCIMTGIFAASSLGGVG-FAEGVTMGHQLLVQLESIAITIVWSGVVAFIGYKLADLTVGLRVPEEQEREGLDVNSHGENAYNADQAQQP.. 412
3 -113.0002ns1_A mol:protein length:412 Ammonia channel  ali model follow..  43  1..............................APAVADKADNAFMMICTALVLFMTPGIALFYGGLIRGKNVLSMLTQVTVTFALVCILWVVYGYSLAFGEGNNFFGNINWLMLKNI--------------ELTAVMGSIYQYIHVAFQGSFACITVGLIVGALAERIRFSAVLIFVVVWLTLSYIPIAHMVWGG----GLLASHGALDFAGGTVVHINAAIAGLVGAYLIGKRVGFGKEAFKPHNLPMVFTGTAILYIGWFGFNAGSAGTANE---------IAALAFVNTVVATAAAILGWIFGEWALRGKPSLLGACSGAIAGLVGVTPACGYIGVGGALIIGVVAGLAGLWGVTLKRLLRVDDPCDVFGVHGVCGIVGCIMTGIFAASSLGGVG-FAEGVTMGHQLLVQLESIAITIVWSGVVAFIGYKLADLTVGLRVPEEQEREGLDVNSHGENAYNAGTLVPR.. 412
4 -113.0002b2f_A mol:protein length:399 ammonium transporter  ali model follow..  43  1..................................MSDGNVAWILASTALVMLMVPGVGFFYAGMVRRKNAVNMIALSFISLIITVLLWIFYGYSVSFGNDISGIIGGLNYALLS--------------------GVKGEDLLFMMYQMMFAAVTIAILTSAIAERAKVSSFILLSALWLTFVYAPFAHWLWGG----GWLAKLGALDFAGGMVVHISSGFAALAVAMTIGKRAGFEEYSIEPHSIPLTLIGAALLWFGWFGFNGGSALAAND---------VAINAVVVTNTSAAVAGFVWMVIGWI-KGKPGSLGIVSGAIAGLAAITPAAGFVDVKGAIVIGLVAGIVCYLAMDFRIKKKIDESLDAWAIHGIGGLWGSVAVGILANPEVNGY--AGLLFGNPQLLVSQLIAVASTTAYAFLVTLILAKAVDAAVGLRVSSQEEYVGLDLSQHEEVAYTLE....... 393
5 -113.0002nuu_A mol:protein length:415 Ammonia channel  ali model follow..  43  1...........................APAVAAVADKADNAFMMICTALVLFMTPGIALFYGGLIRGKNVLSMLTQVTVTFALVCILWVVYGYSLAFGEGNNFFGNINWLMLKNI--------------ELTAVMGSIYQYIHVAFQGSFACITVGLIVGALAERIRFSAVLIFVVVWLTLSYIPIAHMVWGG----GLLASHGALDFAGGTVVHINAAIAGLVGAYLIGKRVGFGKEAFKPHNLPMVFTGTAILYIGWFGFNAGSAGTANE---------IAALAFVNTVVATAAAILGWIFGEWALRGKPSLLGACSGAIAGLVGVTPACGYIGVGGALIIGVVAGLAGLWGVTLKRLLRVDDPCDVFGVHGVCGIVGCIMTGIFAASSLGGVG-FAEGVTMGHQLLVQLESIAITIVWSGVVAFIGYKLADLTVGLRVPEEQEREGLDVNSHGENAYN......... 408
6 -110.0006eu6_A mol:protein length:405 Ammonium transporter  ali model follow..  28  1..............................MENIQININHLWVIMAACMVFLMQLGFTSYETGFSQSKNAISIALRNLVDTLISSLVFFSVGFGFMFGKSYMGLIGIDLFFAND-----------------LALHPNTLSYSFFFFQMVFASTAATILTGAIAERSGFIPNIAGTAFIVAIIYPIFGHWAWGNLFSPGWLKELGFIDFAGATVVHSIGGWFAMAAAIMVGPRIDKYNPDIGLHNVPLATLGTFFLWFGWFGFNGGSLLRVSV---------NIGLVILNTNMAAASAGVSALIFIYATRKRIEAGSLFTAILAGLVAITASSNMVTPVSAVAIGLITGILAIIAEGIEKTLKIDDPVSAIAVHGVGGVIGTLCVAIFAQKSYL----LAENGSRMHQLGIQALGVIVAFSWSFGLGMLFFLCLKKVKRLRVTPEEEKRGLNVAEAA.............. 405
7 -106.0005aez_A mol:protein length:486 MEP2  ali model follow..  32  1............MSGQFTGTGTGGDVFKVDLNEQFDRADMVWIGTASVLVWIMIPGVGLLYSGISRKKHALSLMWAALMAACVAAFQWFWWGYSLVFAHNGSVFLGTLQNFCLK------------DVLGAPSIVKTVPDILFCLYQGMFAAVTAILMAGAGCERARLGPMMVFLFIWLTVVYCPIAYWTWGGNGW---LVSLGALDFAGGGPVHENSGFAALAYSLWLGKRHDPVAKGYKPHSVSSIVMGTIFLWFGWYGFNGGSTGNSSM---------RSWYACVNTNLAAATGGLTWMLVDFRTGGKWSTVGLCMGAIAGLVGITPAAGYVPVYTSVIFGIVPAIICNFAVDLKDLLQIDDGMDVWALHGVGGFVGNFMTGLFAADYVATEIDGGWMNHHWKQLGYQLAGSCAVAAWSFTVTSIILLAMDRILRIRLHEDEEMLGTDLAQIGEYAYYADDDPET.. 443
8 -104.0005aex_A mol:protein length:505 AMMONIUM TRANSPORTER MEP2  ali model follow..  32  1........MSYNFTGTPTGEGTGGNSLTTDLNTQFDLANMGWIGVASAGVWIMVPGIGLLYSGLSRKKHALSLLWASMMASAVCIFQWFFWGYSLAFSHNTRGNGFIGTL----------EFFGFRNVLGAPSSVSSLPDILFAVYQGMFAAVTGALMLGGACERARLFPMMVFLFLWMTIVYCPIACWVWNAEGW---LVKLGSLDYAGGLCVHLTSGHGGLVYALILGKRNDPVTRKYKPHSVTSVVLGTVFLWFGWMFFNGGSAGNATI---------RAWYSIMSTNLAAACGGLTWMVIDFRCGRKWTTVGLCSGIIAGLVGITPAAGFVPIWSAVVIGVVTGAGCNLAVDLKSLLRIDDGLDCYSIHGVGGCIGSVLTGIFAADYVNATADGGWINHHYKQVGYQLAGICAALAWTVTVTSILLLTMNAILKLRLSADEEELGTDAAQIGEFTYEE........ 446
9 -88.1003b9w_A mol:protein length:407 Ammonium transporter family  ali model follow..  20  2....................................................AVAPAEINEARLVAQYNYINILAMLLVGFGFLMVFVRRYGFSATTGTYLVVATGLPLYILLR--------------ANGIFGHALTPHSVDAVIYAEFAVATGLIAMGAVLGRLRVFQYALLALFIVPVYLLNEWLVLDN-----ASGLTEGFQDSAGSIAIHAFGAYFGLGVSIALTTAAQRAQPISDATSDRFSMLGSMVLWLFWPSFATAIVPFEQ-----------MPQTIVNTLLALCGATLATYFLSLFHKGKASIVDMANAALAGGVAIGSVCNIVGPVGAFVIGLLGGAISVVGFVLESKAKTIDTCGVHNLHGLPGLLGGFSAILIVPG----------------IAVAQLTGIGITLALALIGGVIAGALIKLTGTTKQAYEDSHEFIHLAGPEDEHKAERLVLE... 378
10 -85.0003bhs_A mol:protein length:406 Ammonium transporter family protein Rh50  ali model follow..  20  3......................................................APAEINEARLVAQYNYINILAMLLVGFGFLMVFVRRYGFSATTGTYLVVATGLPLYILLR--------------ANGIFGHALTPHSVDAVIYAEFAVATGLIAMGAVLGRLRVFQYALLALFIVPVYLL--NEWLVLDNAS---GLTEGFQDSAGSIAIHAFGAYFGLGVSIALTTAAQRAQPESDATSDRFSMLGSMVLWLFWPSFATAIV-----------PFEQMPQTIVNTLLALCGATLATYFLSAFHKGKASIVDMANAALAGGVAIGSVCNIVGPVGAFVIGLLGGAISVVGFVLESKAKTIDTCGVHNLHGLPGLLGGFSAILIVPG----------------IAVAQLTGIGITLALALIGGVIAGALIKLTGTTKQAYEDSHEFIHLAGPEDEHKAERLVLE... 377
11 -79.8003hd6_A mol:protein length:490 Ammonium transporter Rh type C  ali model follow..  15  19.......................................TCLLLQVIMVILFAHWWSERTHKNLSDMENEFYYRYPSFQDVHVMVFMTFLQRYGFSAVGFNFLLAAFG-----------IQWALLMQGWFHFLQDRYIVVGVENLINADFCVASVCVAFGAVLGKVSPIQLLIMTFFQVTLFAVNEFILLN----------LLKVKDAGGSMTIHTFGAYFGLTVTRILYRRNLEQSKESVYQSDLFAMIGTLFLWMYWPSFNSAISYHGDSQ----------HRAAINTYCSLAACVLTSVAISSAKKGKLDMVHIQNATLAGGVAVGTAAEMLMPYGALIIGFVCGIISTLGFVLESRLHIQDTCGINNLHGIPGIIGGIVGAVTAASASLEFQGFNGDWTARTQGKFQIYGLLVTLAMALMGGIIVGLILRLPFWGQPSDENCFEDAVYWEMPEG............ 446

FFAS is supported by the NIH grant R01-GM087218-01
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Plewczynski D, Tkacz A, Godzik A., Rychlewski L. A support vector machine approach to the identification of phosphorylation sites. Cell Mol Biol Lett. 2005;10(1):73-89.