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Query: [J] COG0012 Predicted GTPase, probable translation factor, from COG0516

Results of FFAS03 search in PDB0516
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MEIGVVGKPNVGKSTFFSAATLVDVEIANYPFTTIDANVGVTYAIAEHPCKELGCKPNPQNYEYREGLALIPVKMIDVAGLVPGAHEGRGLGNKFLDDLRMASALIHVVDVTGKTDAEGQPTENHDPIEDIEFLEREIDYWIYGILSKGWDKFAKRIKLQRIKLESAIAEHLSGIGVTENDVWEAMHRLGLPSDPTLWSQEDLLAFASEIRRINKPMIIAANKADAASEEQINRLIKEGEKRGYIVVPTSAAAELTLRKAAKAGFIDYIPGSSEFKILKDMNERQKKALLMIKEKVLDRFGSTGVQEVINKAVFELLNLIPVYPVQDENKLTDQFGNVLPHVFLMKKGSNPRDLAFKVHTDLGRGFLYAINAKTKRRIGEDYELQFNDIIKIVAVTKLast
1 -142.0001wxq_A mol:protein length:397 GTP-binding protein  ali model follow..  88  1MEIGVVGKPNVGKSTFFSAATLVDVEIANYPFTTIEANVGVTYAITDHPCKELGCSPNPQNYEYRNGLALIPVKMVDVAGLVPGAHEGRGLGNKFLDDLRMASALIHVVDATGKTDPEGQPTDYHDPVEDIEFLEREIDYWIYGILSKGWDKFAKRIKLQKIKLESAIAEHLSGIGVNENDVWEAMHKLNLPEDPTKWSQDDLLAFASEIRRVNKPMVIAANKADAASDEQIKRLVREEEKRGYIVIPTSAAAELTLRKAAKAGFIEYIPGASEFKVLRDMSEKQKRALMVIKEKVLDRFGSTGVQEVINRVVFDLLKLIPVYPVHDENKLTDQFGNVLPHVFLMKKGSTPRDLAFKVHTDLGKGFLYAINARTKRRVGEDYELQFNDIVKIVSVTR 397
2 -81.1002dby_A mol:protein length:368 GTP-binding protein  ali model follow..  27  2LAVGIVGLPNVGKSTLFNALTRANALAANYPFATIDKNVGVVPL-EDERLYALQRTFAKGE---VPPVVPTHVEFVDIAGLVKGAHKGEGLGNQFLAHIREVAAIAHVLRCFPDPDVV-HVMGRVDPLEDAEVVETELLLADLATLERRLERLRKEARADRERLPL----------LEAAEGLYVHLQEGKPARTFPPSEAVARFLKETPLLTAKPVIYVANVAEEDGNPQVEAVRRKALEEGAEVVVVSARLE------------------AELAELSGEEARELLAAYGLQESGLQR---------LARAGYRALDLLTFFTA----------GEKEVRAWTVRRGTKAPRAAGEIHSDMERGFIRAEERGWVRLEGKDYEVQDGDVIYVLFN.. 367
3 -78.2002ohf_A mol:protein length:396 GTP-binding protein 9  ali model follow..  26  23LKIGIVGLPNVGKSTFFNVLTNSQASAENFPFCTIDPNESRVPV-PDERFDFLCQYHKPAS------KIPAFLNVVDIAGLVKGAHNGQGLGNAFLSHISACDGIFHLTRAFEDDDIT-HVEGSVDPIRDIEIIHEELQLKDEEMIGPIIDKLEKVAVRGGDKKLKPEYDIMCKVKSWVIDQKKPVRFYH------DWNDKEIEVLNKHLFLTSKPMVYLVNLSEKDKNKWLIKIKEWVDKPGALVIPFSGALELKLQEL-------------------SAEERQKYLEANMTQSALPK---------IIKAGFAALQLEYFFTA----------GPDEVRAWTIRKGTKAPQAAGKIHTDFEKGFIMAEAAGKYRQQGRNYIVEDGDIIFFKFNT. 389
4 -78.1001jal_A mol:protein length:363 YchF protein  ali model follow..  28  3FKCGIVGLPNVGKSTLFNALTKAGIEAANYPFCTIEPNTGVVPM-PDPRLDALAEIVKPER------ILPTTMEFVDIAGLVAGASKGEGLGNKFLANIRETDAIGHVVRCFENDDIV-HVAGKIDPLDDIDTINTELALADLDSCERAIQRLQKRAKGGDKEAKFEL---------SVMEKILPVLENAGMIRSVGLDKEELQAIKSYNFLTLKPTMYIANVNEDGNNPYLDRVREIAAKEGAVVVPVCAAIE------------------SEIAELDDEEKVEFLQDLGIEEPGLNR---------VIRAGYALLNLQTYFTA----------GVKEVRAWTVSVGATAPKAAAVIHTDFEKGFIRAEEAGKWRLEGKDYIVQDGDVMHFRFN.. 362
5 -77.9001ni3_A mol:protein length:392 YchF GTP-binding protein  ali model follow..  23  21LKTGIVGMPNVGKSTFFRAITKSVGNPANYPYATIDPEEAKVAV-PDERFDWLCEAYKPKS------RVPAFLTVFDIAGLTKGASTGVGLGNAFLSHVRAVDAIYQVVRAFDDAEII-HVEGDVDPIRDLSIIVDELLIKDAEFVEKHLEGLRKITSRGANTLEMKAKKEEQAI---IEKVYQYLTETKQPIRKGDWSNREVEIINSLYLLTAKPVIYLVNMSERDKNKYLPKIKKWIDENGDTLIPMSVAFE------------------ERLTNFTEEEAIEECKKLNTK---------SMLPKII-VTGYNALNLINYFTC----------GEDEVRSWTIRKGTKAPQAAGVIHTDFEKAFVVGEAAGKYLTKGKEYVMESGDIAHWKAGKR 392
6 -71.7005ee0_A mol:protein length:395 Obg-like ATPase 1  ali model follow..  24  26LKIGIVGLPNVGKSTFFNIVTKLSIPAENFPFCTIDPNEARVYV-PDERFDWLCQLYKPKS------EVSAYLEINDIAGLVRGAHAGEGLGNAFLSHIRAVDGIFHVLRAFEDKEVT-HIDDSVDPVRDLETIGEELRLKDIEFVQNKIDDLEKSMKRSNDKQLKLEHELC--------EKVKAHLEDGKDVRFGDWKSADIEILNTFQLLTAKPVVYLVNMSEKDKNKFLPKIHAWVQEHGGTIIPFSCAFE------------------RLLADMPPDEAAKYCAENQIA---------SVIPKII-KTGFAAIHLIYFFTA----------GPDEVKCWQIRRQTKAPQAAGTIHTDFERGFICAEAAGKYRQEGKTYVVQDGDIIFFKFNV. 389
7 -41.1004a9a_A mol:protein length:376 RIBOSOME-INTERACTING GTPASE 1  ali model follow..  22  68.SVGFVGFPSVGKSTLLSKLTGTESEAAEYEFTTLVTVPGVIRYK-------------------------AKIQMLDLPGIIDGAKDGRGRGKQVIAVARTCNLLFIILDVN-------------KPLHHKQIIEKELEGVGIRLNKTPPDILIKKKEKGGISITNTVPLT----HLGNDEIRAVMSEYRINSAEIAFRCDDLIDVLEASSRRYMPAIYVLNKIDSLSIEELELLYR-----IPNAVPISSGQDWNLDE-------------------------------------------------LLQVMWDRLNLVRIYTKPK------GQIPDFTDPVVLRSDCSVKDFCNQIHKSLVDDFRNAL---QPQYVGLSHILEDEDVVTILKK.. 370
8 -28.5001udx_A mol:protein length:416 the GTP-binding protein Obg  ali model follow..  27  159.DVGLVGYPNAGKSSLLAAMTRAHPKIAPYPFTTLSPNLGVVEVSEE------------------------RFTLADIPGIIEGASEGKGLGLEFLRHIARTRVLLYVLDAAD------------EPLKTLETLRKEVGAYDPALLRR-------------------------------------------------------------------PSLVALNKVDLLEEEAVKALADALAREGLAVLPVSALTGAGLPALKEA--------HALVRSTPPPEMPKPVPRKEVQAGVEVVPVAEGVYEVRAPEVERYLARIKGDLMEAAGYLQEVFRRQGVEAALRAKGVRAGDLVRIGGLEFE.................................. 411
9 -28.3002qu8_A mol:protein length:228 Putative nucleolar GTP-binding protein 1  ali model follow..  21  25.TIILSGAPNVGKSSFMNIVSRANVDVQSYSFTTKNLYVGHFDH------------------------KLNKYQIIDTPGLLDRAFENRNTIEMALAHING--VILFIIDISEQC--------GLTIKEQINLFYS--------------------------------------------------------------------------VFSNKSIVIGFNKIDKCNMDSLSIDNKLNVKNPIKFSSFSTLTGVGVEQAKIT-ACELLKNDQAESILLDQEQLLNTKLGETKN....................................................................................................... 222
10 -26.6001lnz_A mol:protein length:342 SPO0B-associated GTP-binding protein  ali model follow..  34  160.DVGLVGFPSVGKSTLLSVVSSAKPKIADYHFTTLVPNLGMVETDDG------------------------SFVMADLPGLIEGAHQGVGLGHQFLRHIERTRVIVHVIDMSG--------LEGRDPYDDYLTINQELSEYNLRLTER-------------------------------------------------------------------PQIIVANKMDMPEAAENLEAFKEKLTDDYPVFPISAVTREGLREL......................................................................................................................................... 320
11 -26.1004csu_9 mol:protein length:390 GTPASE OBGE/CGTA  ali model follow..  22  161.DVGMLGMPNAGKSTFIRAVSAAKPKVADYPFTTLVPSLGVVRMDNE------------------------SFVVADIPGLIEGAAEGAGLGIRFLKHLERCRVLLHLIDIDP--------IDGTDPVENARIIISELEKYSQDLATK-------------------------------------------------------------------PRWLVFNKIDLLDKVEAEEKAKAIAEAEDKYYLISAASGLGVKDLCWDVMTFIIENPVVQAEEAKQPEKVEFMWDDYHRQQLEEIAEEDDEDWDDDWDEDDEEGVEFI.......................................................................... 387
12 -25.1002e87_A mol:protein length:357 Hypothetical protein PH1320  ali model follow..  29  169.TVVIAGHPNVGKSTLLKALTTAKPEIASYPFTTRGINVGQFED------------------------GYFRYQIIDTPGLLDRPISERNQAILALRYL--GNLIIYIFDPSEHCG---------FPLEEQIHLFEEVHGEFKD----------------------------------------------------------------------LPFLVVINKIDVADEENIKRLEKFVKEKGLNPIKISALKGTGIDLVKEE...................................................................................................................................... 329
13 -19.5003w5i_A mol:protein length:204 Ferrous iron transport protein B  ali model follow..  23  4KRIALLGMPNTGKSTLFNRMTGGAARVGNWPGITVELLSGKILLGAD------------------------MVEIIDLPGILHGFSDDEQVVRHFLHD-NVPDLALVILNATQ--------------------IERQMS------------------------------------------------------------------LLLQLKQLNMNIVVLLNMSDEAKQYGITDSRKMSELLQIPVFQLSGKYGTGYQEALQA...................................................................................................................................... 158
14 -19.1002eki_A mol:protein length:93 Developmentally-regulated GTP-binding protein  ali model follow..  23  1...............................................................................................................................................................................................................................................................................................................GSSGS-----SGYLKLVRIYTKPK-----GQLPDYTSPVVLPYSRTTVEDFCMKIHKNLIKEFKYALVWGLSQKVGKDHTLEDEDVIQIVKKS. 88
15 -18.3002wjg_A mol:protein length:188 FERROUS IRON TRANSPORT PROTEIN B HOMOLOG  ali model follow..  27  8YEIALIGNPNVGKSTIFNALTGENVYIGNWPGVTVEKKEGEFEYNGE------------------------KFKVVDLPGVLTANSIDEIIARDYIIN-EKPDLVVNIVDAT--------------------------------ALERNL------------------------------------------------------YLTLQLMEMGANLLLALNKMDLAKSLGIEDVDKLEKILGVKVVPLSAAKKMGIEELKKA...................................................................................................................................... 162
16 -17.8004v7f_o mol:protein length:647 Nucleolar GTP-binding protein 1  ali model follow..  17  169.TLLICGYPNVGKSSFLRCITKSDVDVQPYAFTTKSLYVGHFDY------------------------KYLRFQAIDTPGILDRPTEEMNQSIYAIAHLR--SCVLYFMDLSEQCGFTIE---------------------------------------AQVKLFHSIKPLFA----------------------------------------NKSVMVVINKTDIIRPEDLQLLESVKEVPGVEIMTSSCQLEENVMEVRNKEKLLASRIENKLKSQSRINNVLNKNRRKLARDIEAENGGAGVFNVNLKDKYLLEDDEWKNDIMPE----------------ILDGKNVYDF---LDPEIAAKLQALEEEEEKLENEGFYNSDDEE......... 475
17 -17.2003a1s_A mol:protein length:258 Iron(II) transport protein B  ali model follow..  20  6VKVALAGCPNVGKTSLFNALTGTKQYVANWPGVTVEKKEGVFTYKGY------------------------TINLIDLPGTLGYSSIDEKIARDYLLK-GDADLVILVADSV--------------------------------NPEQSL------------------------------------------------------YLLLEILEMEKKVILAMTAIDEAKKTGMKDRYELQKHLGIPVVFTSSVTGEGLEELKEKIVEYAQKNTILHRMILDYGEKVESEIKKVENFL..................................................................................................... 193
18 -16.7003iby_A mol:protein length:256 Ferrous iron transport protein B  ali model follow..  21  2THALLIGNPNCGKTTLFNALTNANQRVGNWPGVTVEKKTGEFLLGEH------------------------LIEITDLPGVYSGISQDEQIAAQSVID-LEYDCIINVIDAC--------------------------------HLERHL------------------------------------------------------YLTSQLFELGKPVVVALNMMDIAEHRGISDTEKLESLLGCSVIPIQAHKNIGIPALQQS...................................................................................................................................... 160
19 -16.5003k53_A mol:protein length:271 Ferrous iron transport protein b  ali model follow..  20  4KTVALVGNPNVGKTTIFNALTGLRQHVGNWPGVTVEKKEGIMEYREK------------------------EFLVVDLPGILTAHSIDELIARNFILD-GNADVIVDIVDSTC--------------------------------------------------------------------------------------MRNLFLTLELFEMEVKNIILVLNKFDLLKKKGAKDIKKMRKELGVPVIPTNAKKGEGVEELKRMIALMAEGKVTTNPIIPRYDEDIEREIKHISELL..................................................................................................... 192
20 -16.2002wia_A mol:protein length:267 FERROUS IRON TRANSPORT PROTEIN B  ali model follow..  20  4LTVGLIGNPNSGKTTLFNQLTGARQRVGNWAGVTVERKEGIFATTDH------------------------QVTLVDLPGTYSQTSLDEQIACHYILS-GDADMLINVVDAS--------------------------------NLERNL------------------------------------------------------YLTLQLLELGIPCVVALNMLDIAEKQQVRDIDALAARLGCPVIPLVSTRGRGIEALKIA...................................................................................................................................... 162
21 -16.0003i8s_A mol:protein length:274 Ferrous iron transport protein B  ali model follow..  21  4LTIGLIGNPNSGKTTLFNQLTGSRQRVGNWAGVTVERKEGQFSTTDH------------------------QVTLVDLPGTYSQTSLDEQIACHYILS-GDADLLINVVDAS--------------------------------NLERNL------------------------------------------------------YLTLQLLELGIPCIVALNMLDIAEKQNIREIDALSARLGCPVIPLVSTRGRGIEALKLA...................................................................................................................................... 162
22 -15.0003b1v_A mol:protein length:272 Ferrous iron uptake transporter protein B  ali model follow..  22  4TEIALIGNPNSGKTSLFNLITGHNQRVGNWPGVTVERKSGLVKKNKD-------------------------LEIQDLPGIMSPYSPEAKVARDYLLS-QRADSILNVVDAT--------------------------------NLERNL------------------------------------------------------YLTTQLIETGIPVTIALNMIDVDGQGKKINVDKLSYHLGVPVVATSALKQTGVDQVVKKAA.................................................................................................................................... 159
23 -14.9004r98_A mol:protein length:271 Ferrous iron transport protein B  ali model follow..  21  4LTIGLIGNPNSGKTTLFNQLTGSRQRVGNWAGVTVERKEGQFSTTDH------------------------QVTLVDLPGTYSQTSLDEQIACHYILS-GDADLLINVVDAS--------------------------------NLERNL------------------------------------------------------YLTLQLLELGIPCIVALNMLDIAEKQNIREIDALSARLGCPVIPLVATDTKNVQFVLKLAI.................................................................................................................................... 164
24 -14.7002gj8_A mol:protein length:172 tRNA modification GTPase trmE  ali model follow..  23  5MKVVIAGRPNAGKSSLLNALAGREAIVTDIAGTTRDVLREHIHID-------------------------MPLHIIDTAGLREASDEVERIGERAWQEIEQADRVLFMVDGTTTDAVD....................................................................................................................................................................................................................................................................................... 100
25 -14.5001rfl_A mol:protein length:172 Probable tRNA modification GTPase trmE  ali model follow..  23  8MKVVIAGRPNAGKSSLLNALAGREAIVTDIAGTTRDVLREHIHID-------------------------MPLHIIDTAGLREASDEVERIGERAWQEIEQADRVLFMVDGTTTDAVD....................................................................................................................................................................................................................................................................................... 103
26 -13.9002cxx_A mol:protein length:190 Probable GTP-binding protein engB  ali model follow..  20  3.TIIFAGRSNVGKSTLIYRLTGKKVRRGKRPGVTRKIIE----------------------------IEWKNHKIIDMPGFMMGLPKKDEIVHFIEDNAKNIDVAVLVVDGKAAPEIIKRWEKRGEIPIDVEFYQ-------------------------------------------------------------------------FLRELDIPTIVAVNKLDKIKNVQAEKFEVPLSEIDKVFIPISAKFGDNIERLKN....................................................................................................................................... 176
27 -13.3002dyk_A mol:protein length:161 GTP-binding protein  ali model follow..  23  3.KVVIVGRPNVGKSSLFNRLLKKRSAV-------VADVPGVTRDLKEGVVETDRGR----------------FLLVDTGGLWSGDKWEKKIQEKVDRALEDAEVVLFAVDGRAELTQA....................................................................................................................................................................................................................................................................................... 96
28 -13.0002qtf_A mol:protein length:364 GTP-binding protein  ali model follow..  23  181.SIGIVGYTNSGKTSLFNSLTGLTQKVDTKLFTTMSPKRYAIPIN-------------------------RKIMLVDTVGFIRGIPP---IVDAFLSEAKYSDALILVIDSTFSENL-------IETLQSSFEILREIGV------------------------------------------------------------------------SGKPILVTLNKIDKINGDLVEKLSKELYSPIFDVIPISALKRTNLELLRDK...................................................................................................................................... 347
29 -12.1003iev_A mol:protein length:308 GTP-binding protein era  ali model follow..  17  7..VAIVGKPNVGKSTLLNNLLGTKVSISPKAGTTRMRVLGVKNIPNEAQ-----------------------IIFLDTPGIYEPKKSGHSMVEIAKQSLEEADVILFMIDAT-----------------------------------------------------------------------------------EGWRPRDEEIYQNFIKPLNKPVIVVINKIDGPAKNVLPLIDEIHKKELTEIVPISALKGANLDELVKTILKYLPEGEPLFPEDMITDLPLRLLAAEI------------VREKAMMLTREEVPTSIAVKINEIKPGDANPNMLVIKGEIIKKGQRLKEIGKRARQELELILGRPVYLELWVKVVPDWRRRPEYVRLF..... 298
30 -11.8003hvz_A mol:protein length:78 Uncharacterized protein  ali model follow..  23  16....................................................................................................................................................................................................................................................................................................................................................DVISLPIGSTVIDFAYAIHSAVGNRMIGAK---DGRIVPIDYKVKTGEIIDVLTTKE 70
31 -11.3001ega_A mol:protein length:301 PROTEIN (GTP-BINDING PROTEIN ERA)  ali model follow..  18  11..IAIVGRPNVGKSTLLNKLLGQKISISRKAQTTRHRIVGI-------------------------TEGAYQAIYVDTPGLHMEEKRNRLMNKAASSSIGDVELVIFVVEGTRWTPDD-------------------------------------------------------------------------------------EMVLNKLREGKAPVILAVNKVDNVQEKALQFLASQMN---LDIVPISAETGLNVDTIAAI-VRKHLPEATHHFPEDYITDQRFMASEIIREKLMRFLGATVEIERFVSNERGGYDINGLILVEREGQKKMVIG---------NKGAKIKTIGIEARKDMQEMFEAPVHLELWVKVKSGWADDERALRSL..... 295
32 -11.2005ady_6 mol:protein length:426 GTPASE HFLX  ali model follow..  28  199.TVSLVGYTNAGKSTLFNRITEARVYAADQLFATLDPTLRRIDVA--------------------------ETVLADTVGFIR--HLPHDLVAAFLQETRQATLLLHVIDAADVRVQE--------NIEAVNTVLEEIDAHEIPTL........................................................................................................................................................................................................................................................... 313
33 -11.2002kmm_A mol:protein length:73 Guanosine-3`,5`-bis(Diphosphate) 3`-pyrophosp  ali model follow..  20  11....................................................................................................................................................................................................................................................................................................................................................EIKRLPQGATALDFAYSLHSDLGDHCIGAK---NHKLVPLSYVLNSGDQVEVLSSKS 65
34 -10.9001wf3_A mol:protein length:301 GTP-binding protein  ali model follow..  14  10..VAIVGKPNVGKSTLLNNLLGVKVAPSPRPQTTRKRLRGILT------------------------EGRRQIVFVDTPGLHKPMDAGEFMDQEVYEALADVNAVVWVVDLR------------------------------------------HPPTPEDELVARALKP----------------------------------------LVGKVPILLVGNKLDAAKYPEEAMKAYHELLPEAEPRMLSALDERQVAELKADLLALMPEGPFFYDYAKSDQTFGEWVAEILREEAMKRLWHEAVATKVEEVAERENGVLYIKAILYVERPSQKA------IVIGEGGRKIKEIGQATRKQLEALLGKKVYLDLEVKVYPDWRKDPEALRELGYRSS 299
35 -9.8905ck4_A mol:protein length:316 Putative signal recognition particle protein  ali model follow..  12  15.SVLLIGPSGAGKTALLTLFERGPLLNPD-THTSQVPTSVELAVGANEDGTPTSYKVDLDAA----GATARKFLLID----TPGHPKLRGTTLQHLLNPSPSLTIIPTNAPNKKTSTDSHSDPYKSKLKAVIFLLDA-------------AALADSDGDYLSQTASYLYDVLLSLQKRFHSRKNSRAPSSI------------------------PVLIAANKQDLFTAVPASLVKSRLEH------------ELGRIRKTRQKGLL-EASVTSEDEIRADDEEGWLGAVGSKEFKFEEMMEFDMEVEVMGGN.................................................................................... 291
36 -9.6402fh5_B mol:protein length:214 Signal recognition particle receptor beta sub  ali model follow..  22  9.AVLFVGLCDSGKTLLFVRLLTGQYRDT---QTSITDSSAIYKV---------------------NNNRGNSLTLIDLPG--------ESLRFQLLDRFSSARAVVFVVDSA---------------------------------------AFQREVKDVAEFLYQVLID-------------------------------------SMALKNSPSLLIACNKQDIAMAKSAKLIQQQLEKE........................................................................................................................................................... 143
37 -9.5104aur_A mol:protein length:577 LEOA  ali model follow..  10  54LRIALLGAFSDGKTSVIAAWLGKVMD-----------DMNISMDESSDRLSIYKPEGLPDQ-----------CEIVDTPGL--FGDKEREVDGRLVMYISEAHLIFYVVDATNPLKES-WVLRDLNKLSSTIFVINKMDE------LTDQALFDEQAAIKKANLKGKLQRAADLTAQECEQLNIVCVASNPNGRGLTYWFTKPEHYESR----------------NDLKNAATEILKTNVPEVLLVKTGMDVVKDIVIQRVTLASRHLDELNTFVEKNDEDMHRFSNDIKQSRIEVKRLAGE--LFEELNLMEKQLMSQLRPLDLDDIRPFMDDE------------GYTEDGVGFKLHLRIKQSVDRFFEQ......................... 384
38 -9.3103qq5_A mol:protein length:423 Small GTP-binding protein  ali model follow..  19  29RYIVVAGRRNVGKSSFMNALVGQNVSVSDYAGTTTDPVYKSMELHP-------------------------PVTLVDTPGLDDVGELGRLRVEKARRVFYRADCGILVTDSA--------------------------------------------------------------------------------------PTPYEDDVVNLFKEMEIPFVVVVNKIDVLGEKAEELKGLYESRYEAKVLLVSALQKKGFDDI-GKTISEILPGDEEIPYLGDLIDGGDLVILVVPIDLGAPKGRLIMPQV--HAIREALDREAIALVVKERELRYVMENIGMKPKLVITDSQVAMKVASD-TTFSIVESRYRGDLAYFVESVRKILEDGDTVVI..... 317
39 -9.2303j8g_X mol:protein length:490 GTPase Der  ali model follow..  17  5..VALVGRPNVGKSTLFNRLTRTDALVADFPGLTRDRKYGRAEIEGR------------------------EFICIDTGGIDGTEDG-TRMAEQSLLAIEEADVVLFMVDARAGLMPADE------------------------------------------------------------------------------------AIAKHLRSREKPTFLVANKTDGLDPD--QAVVDFYSLGLGEIYPIAASHGRGVLSLLEHVLLPWMEDLAPQEEVDEDAEYWAQFEAEENGEEEEEDDFDPQSLPIKLA---IVGRPNVGKSTLTNRILGEERVVVYDM----PGTTRDSIYIPMERD-GREYVLIDTAGVRKRGKITDAVEKFSVIKTLQAIE 283
40 -9.1801mky_A mol:protein length:439 Probable GTP-binding protein engA  ali model follow..  18  4..VLIVGRPNVGKSTLFNKLVKKKKAI-------VEDEEGVTRDPVQDTVEWYGKT----------------FKLVDTCGVFDNPQD-QKMKEVTLNMIREADLVLFVVDGKRGITKEDE------------------------------------------------------------------------------------SLADFLRKSTVDTILVANKAENLREFEREVKPELYSLGFGEPIPVSAEHNINLDTMLETIIKKLEEKGLDLESKPEITDAIKVAIVG----------NVGKSTLFNAILNKERALVSPIPGTTRDPVDDEVFIDGRKYVFVDTAGLRRKSRVEPRTVEKYSNYRVVDS-----------IEKADVVVIVLDAT 274

FFAS is supported by the NIH grant R01-GM087218-01
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Sasin JM, Godzik A, Bujnicki JM. SURF'S UP! - protein classification by surface comparisons. J Biosci. 2007 Jan;32(1):97-100.