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Query: [J] COG0012 Predicted GTPase, probable translation factor, from COG1018

Results of FFAS03 search in PDB1018
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MEIGVVGKPNVGKSTFFSAATLVDVEIANYPFTTIDANVGVTYAIAEHPCKELGCKPNPQNYEYREGLALIPVKMIDVAGLVPGAHEGRGLGNKFLDDLRMASALIHVVDVTGKTDAEGQPTENHDPIEDIEFLEREIDYWIYGILSKGWDKFAKRIKLQRIKLESAIAEHLSGIGVTENDVWEAMHRLGLPSDPTLWSQEDLLAFASEIRRINKPMIIAANKADAASEEQINRLIKEGEKRGYIVVPTSAAAELTLRKAAKAGFIDYIPGSSEFKILKDMNERQKKALLMIKEKVLDRFGSTGVQEVINKAVFELLNLIPVYPVQDENKLTDQFGNVLPHVFLMKKGSNPRDLAFKVHTDLGRGFLYAINAKTKRRIGEDYELQFNDIIKIVAVTKLast
1 -124.0001wxq_A mol:protein length:397 GTP-binding protein  ali model follow..  88  1MEIGVVGKPNVGKSTFFSAATLVDVEIANYPFTTIEANVGVTYAITDHPCKELGCSPNPQNYEYRNGLALIPVKMVDVAGLVPGAHEGRGLGNKFLDDLRMASALIHVVDATGKTDPEGQPTDYHDPVEDIEFLEREIDYWIYGILSKGWDKFAKRIKLQKIKLESAIAEHLSGIGVNENDVWEAMHKLNLPEDPTKWSQDDLLAFASEIRRVNKPMVIAANKADAASDEQIKRLVREEEKRGYIVIPTSAAAELTLRKAAKAGFIEYIPGASEFKVLRDMSEKQKRALMVIKEKVLDRFGSTGVQEVINRVVFDLLKLIPVYPVHDENKLTDQFGNVLPHVFLMKKGSTPRDLAFKVHTDLGKGFLYAINARTKRRVGEDYELQFNDIVKIVSVTR 397
2 -99.9002dby_A mol:protein length:368 GTP-binding protein  ali model follow..  25  2LAVGIVGLPNVGKSTLFNALTRANALAANYPFATIDKNVGVVPL-EDERLYALQRTFAKGE--RVPPVVPTHVEFVDIAGLVKGAHKGEGLGNQFLAHIREVAAIAHVLRCFPDPD-VVHVMGRVDPLEDAEVVETELLLADLATLERRLERLRKEARADRERLPL----------LEAAEGLYVHLQEGKPARTFPPSEAVARFLKETPLLTAKPVIYVANVAEEDLPDGRGNPQVEALEEGAEVVVVSARLEAELAELSGEEARELLA---------------------------AYGLQESGLQRLARAGYRALDLLTFFTA----------GEKEVRAWTVRRGTKAPRAAGEIHSDMERGFIRAEERGWVRLEGKDYEVQDGDVIYVLFN.. 367
3 -98.5001jal_A mol:protein length:363 YchF protein  ali model follow..  26  3FKCGIVGLPNVGKSTLFNALTKAGIEAANYPFCTIEPNTGVVPM-PDPRLDALAEIVKPER------ILPTTMEFVDIAGLVAGASKGEGLGNKFLANIRETDAIGHVVRCFENDD-IVHVAGKIDPLDDIDTINTELALADLDSCERAIQRLQKRAKGGDKEAKFEL---------SVMEKILPVLENAGMIRSVGLDKEELQAIKSYNFLTLKPTMYIANVNEDGFENNPDRVREIAAKEGAVVVPVCAAIESEIAELDDEEKVEFLQ---------------------------DLGIEEPGLNRVIRAGYALLNLQTYFTA----------GVKEVRAWTVSVGATAPKAAAVIHTDFEKGFIRAEEAGKWRLEGKDYIVQDGDVMHFRFN.. 362
4 -97.6001ni3_A mol:protein length:392 YchF GTP-binding protein  ali model follow..  23  21LKTGIVGMPNVGKSTFFRAITKSVGNPANYPYATIDPEEAKVAV-PDERFDWLCEAYKPKS------RVPAFLTVFDIAGLTKGASTGVGLGNAFLSHVRAVDAIYQVVRAFDDAE-IIHVEGDVDPIRDLSIIVDELLIKDAEFVEKHLEGLRKITSRGANTLEMKAKKE---EQAIIEKVYQYLTETKQPIRKGDWSNREVEIINSLYLLTAKPVIYLVNMSERDFLRQKNKYLPKIKSPGDTLIPMSVAFEERLTNFTEEEAIEE----------------------------CKKLNTKSMLPKIIVTGYNALNLINYFTC----------GEDEVRSWTIRKGTKAPQAAGVIHTDFEKAFVVGEAAGKYLTKGKEYVMESGDIAHWKAGKR 392
5 -95.2002ohf_A mol:protein length:396 GTP-binding protein 9  ali model follow..  24  23LKIGIVGLPNVGKSTFFNVLTNSQASAENFPFCTIDPNESRVPV-PDERFDFLCQYHKPAS------KIPAFLNVVDIAGLVKGAHNGQGLGNAFLSHISACDGIFHLTRAFEDDD-ITHVEGSVDPIRDIEIIHEELQLKDEEMIGPIIDKLEKVAVRGGDKKLKPEYDIMC------KVKSWVIDQKKPVRFYHDWNDKEIEVLNKHLFLTSKPMVYLVNLSEKDYIRKKNKWLIKIKDPGALVIPFSGALELKLQELSAEE----------------------------RQKYLEANMTQSALPKIIKAGFAALQLEYFFTA----------GPDEVRAWTIRKGTKAPQAAGKIHTDFEKGFIMAEAAGKYRQQGRNYIVEDGDIIFFKFN.. 388
6 -93.0005ee0_A mol:protein length:395 Obg-like ATPase 1  ali model follow..  25  26LKIGIVGLPNVGKSTFFNIVTKLSIPAENFPFCTIDPNEARVYV-PDERFDWLCQLYKPKS------EVSAYLEINDIAGLVRGAHAGEGLGNAFLSHIRAVDGIFHVLRAFEDKE-VTHIDDSVDPVRDLETIGEELRLKDIEFVQNKIDDLEKSMKRSNDKQLKLEHELCEKV--------KAHLEDGKDVRFGDWKSADIEILNTFQLLTAKPVVYLVNMSEKDYQRKKNKFLPKIEHGGETIIPFSCAFERLLADMPPDEAAKY----------------------------CAENQIASVIPKIIKTGFAAIHLIYFFTA----------GPDEVKCWQIRRQTKAPQAAGTIHTDFERGFICAEAAGKYRQEGKTYVVQDGDIIFFKFN.. 388
7 -46.9004a9a_A mol:protein length:376 RIBOSOME-INTERACTING GTPASE 1  ali model follow..  23  68.SVGFVGFPSVGKSTLLSKLTGTESEAAEYEFTTLVTVPGVIRYK-------------------------AKIQMLDLPGIIDGAKDGRGRGKQVIAVARTCNLLFIILDVN-------------KPLHHKQIIEKELEGVGIRLNKTPPDILIKKKEKGGISITNTVPLTHLGNDEIRAVMSEYRINSAEIAFRCDATVDDLIDVLEASSRRYMPAIYVLNKIDSLSIEELELLYR-----IPNAVPISSGQDWNL-------------------------------------------------DELLQVMWDRLNLVRIYT-----KPKGQIPDFTDPVVLRSDRCSVKDFCNQIHKSLVDDFRNALVYGSSQYVGLSHILEDEDVVTILKK.. 370
8 -35.1001lnz_A mol:protein length:342 SPO0B-associated GTP-binding protein  ali model follow..  33  160.DVGLVGFPSVGKSTLLSVVSSAKPKIADYHFTTLVPNLGMVETDDGRS-----------------------FVMADLPGLIEGAHQGVGLGHQFLRHIERTRVIVHVIDMSGLEGR--------DPYDDYLTINQELSEYNLRLTE-------------------------------------------------------------------RPQIIVANKMDMPEAAENLEAFKEKLTDDYPVFPISAVTREGLRELLFE...................................................................................................................................... 323
9 -32.9005m04_A mol:protein length:360 GTPase ObgE/CgtA  ali model follow..  28  175.DVGMLGMPNAGKSTFIRAVSAAKPKVADYPFTTLVPSLGVVRMDNEKS-----------------------FVVADIPGLIEGAAEGAGLGIRFLKHLERCRVLLHLIDIDPIDGT--------DPVENARIIISELEKYSQDLATKPRWLVFNKIDLLDKVEAEEKAKAIAEALGWEDKYYLISAASGLGVKDL......................................................................................................................................................................................................... 338
10 -31.2002qu8_A mol:protein length:228 Putative nucleolar GTP-binding protein 1  ali model follow..  20  25.TIILSGAPNVGKSSFMNIVSRANVDVQSYSFTTKNLYVGHFDHK-------------------------NKYQIIDTPGLLDRAFENRNTIEMALAHINGV--ILFIIDISE------------QCGLTIKEQINLFYSIKSVFSN-------------------------------------------------------------------KSIVIGFNKIDKCNMDSLSIDNKLLIKQPIKFSSFSTLTGVGVEQA-KITACELLKNDQAESILLDQEQLLNTKLGETKN....................................................................................................... 222
11 -31.1004csu_9 mol:protein length:390 GTPASE OBGE/CGTA  ali model follow..  23  161.DVGMLGMPNAGKSTFIRAVSAAKPKVADYPFTTLVPSLGVVRMDNEKS-----------------------FVVADIPGLIEGAAEGAGLGIRFLKHLERCRVLLHLIDIDPIDGT--------DPVENARIIISELEKYSQDLAT-------------------------------------------------------------------KPRWLVFNKIDLLDKVEAEEKAKEALGWEDKYYLISAASGLGVKDLCWDVMTFIIENPVVQAEEAKQPEKVEFMWDDYHRQQLEEIAEEDDEDWDDDWDEDDEEGVEFI.......................................................................... 387
12 -30.5001udx_A mol:protein length:416 the GTP-binding protein Obg  ali model follow..  27  159.DVGLVGYPNAGKSSLLAAMTRAHPKIAPYPFTTLSPNLGVVEVSEEER-----------------------FTLADIPGIIEGASEGKGLGLEFLRHIARTRVLLYVLDAAD------------EPLKTLETLRKEVGAYDPALLR-------------------------------------------------------------------RPSLVALNKVDLLEEEAVKALADALAREGLAVLPVSALTGAGLPALKEA--------HALVRSTPPPEMPKPVPRKEVQAGVEVVPVAEGVYEVRAPEVERYLARIKGDLMEAAGYLQEVFRRQGVEAALRAKGVRAGDLVRIGGLEFE.................................. 411
13 -25.1002e87_A mol:protein length:357 Hypothetical protein PH1320  ali model follow..  29  169.TVVIAGHPNVGKSTLLKALTTAKPEIASYPFTTRGINVGQFED--------------------------FRYQIIDTPGLLDRPISERNEKQAILALRYLGNLIIYIFDPSEHCGF---------PLEEQIHLFEEVH-----------------------------------------------------------------------EFKDLPFLVVINKIDVADEENIKRLEKFVKEKGLNPIKISALKGTGIDLVKEE...................................................................................................................................... 329
14 -24.0003jct_b mol:protein length:647 Nucleolar GTP-binding protein 1  ali model follow..  18  169.TLLICGYPNVGKSSFLRCITKSDVDVQPYAFTTKSLYVGHFDYK-------------------------LRFQAIDTPGILDRPTEEMNIEMQSIYAIAHLRSCVLYFMDLSEQCGF-----------------------TIEAQVKLFHSIKPL-------------------------------------------------------FANKSVMVVINKTDIIRPEDLDEERAQLLESGVEIMTSSCQLEENVMEVRNK...................................................................................................................................... 334
15 -23.7002eki_A mol:protein length:93 Developmentally-regulated GTP-binding protein 1  ali model follow..  22  2.....................................................................................................................................................................................................................................................................................................................SSGSSGYLKLVRIYTKPK-----GQLPDYTSPVVLPYSRTTVEDFCMKIHKNLIKEFKYALVWGLSQKVGKDHTLEDEDVIQIVKKSG 89
16 -19.1002wjg_A mol:protein length:188 FERROUS IRON TRANSPORT PROTEIN B HOMOLOG  ali model follow..  28  8YEIALIGNPNVGKSTIFNALTGENVYIGNWPGVTVEKKEGEFEYNGE------------------------KFKVVDLPGVLTANSIDEIIARDYIIN-EKPDLVVNIV--------------------DATALERNLY------------------------------------------------------------------LTLQLMEMGANLLLALNKMDLAKSLGIEDVDKLEKILGVKVVPLSAAKKMGIEELKKA...................................................................................................................................... 162
17 -18.9002cxx_A mol:protein length:190 Probable GTP-binding protein engB  ali model follow..  19  3.TIIFAGRSNVGKSTLIYRLTGKKVRRGKRPGVTRKIIEIEWK----------------------------NHKIIDMPGFGFMMGLPKEVQERIEDNAKNIDVAVLVVDGKAAPEIIKRWEKRGEIPIDVE-------------------------------------------------------------------------FYQFLRELDIPTIVAVNKLDKIKNVQEVINFLAEKFEDKVFIPISAKFGDNIERLKNR...................................................................................................................................... 177
18 -18.8003w5i_A mol:protein length:204 Ferrous iron transport protein B  ali model follow..  23  4KRIALLGMPNTGKSTLFNRMTGGAARVGNWPGITVELLSGKILLGAD------------------------MVEIIDLPGILHGFSDDEQVVRHFLHD-NVPDLALVIL--------------------NATQIERQM------------------------------------------------------------------SLLLQLKQLNMNIVVLLNMSDEAKQYGITDSRKMSELLQIPVFQLSGKYGTGYQEALQA...................................................................................................................................... 158
19 -18.7003a1s_A mol:protein length:258 Iron(II) transport protein B  ali model follow..  17  6VKVALAGCPNVGKTSLFNALTGTKQYVANWPGVTVEKKEGVFTYKGY------------------------TINLIDLPGTLGYSSIDEKIARDYLLK-GDADLVILVA--------------------DSVNPEQSL------------------------------------------------------------------YLLLEILEMEKKVILAMTAIDEAKKTGMKDRYELQKHLGIPVVFTSSVTGEGLEELKEKIVEYAQKNTILHRMILDYGEKVESEIKKVENFLRDKKLRINPRYFALKYLSGDPEFYSEGVKLGLPELSEEERIGYRLLIAKRKREYVENVVKEAFAD.................................... 258
20 -18.5005lad_A mol:protein length:404 Putative GTP-binding protein  ali model follow..  16  12..IVVAGRRNVGKSSFMNALVGQNVSVSEYAGTTTDPVYKSMELYPV-----------------------GPVTLVDTPGLDDVGELGRLRVEKARRVFYRADCGILVTDSEPTPYE--------------------------------------------------------------------------------------DDVVNLFKEMEIPFVVVVNKIDVLGEKAEELKGLYESRYEAKVLLVSALQKKGFDDIGKTISEILPGDEEIPYLGDLIDGGDLVILVVPIDLGAPKGRLIMPQVHAIREALDREAIALVVKERELRYVMENIGMK--PKLVITDSQVVMKVASDVPEDVELTTFRGDLAYFVESVRKIEELEDGDTVVIMEGC. 302
21 -18.4003b1v_A mol:protein length:272 Ferrous iron uptake transporter protein B  ali model follow..  23  4TEIALIGNPNSGKTSLFNLITGHNQRVGNWPGVTVERKSGLVK---------------------------KDLEIQDLPGIMSPYSPEAKVARDYLLS-QRADSILNVV--------------------DATNLERNLY------------------------------------------------------------------LTTQLIETGIPVTIALNMIDVLDGQGKKNVDKLSYHLGVPVVATSALKQTGVDQVVKK...................................................................................................................................... 157
22 -18.2005kh0_A mol:protein length:396 Small GTP-binding protein  ali model follow..  18  11..IAITGRRNVGKSSFMNALIGQEVSVSNVAGTTTDPVFKSMELSPV-----------------------GPITLIDTPGLDDVGELGIKRIKKAKKSLYRADCGILIVDDIPGNFE--------------------------------------------------------------------------------------EQIIKLFKELEIPYFIAINKIDT---IDHENIEKEYKKYNVPILKVSALKKIGFEKIGKTINSILPKDDEIPYLSDLIDGGDLVILVVPIDLGAPKGRLIMPQVHAIREGLDREALVLVVKERELRYAIENIGIKPRL--VVTDSQSVMKVVSDVPEDI................................... 257
23 -17.7003iby_A mol:protein length:256 Ferrous iron transport protein B  ali model follow..  22  2THALLIGNPNCGKTTLFNALTNANQRVGNWPGVTVEKKTGEFLLGEH------------------------LIEITDLPGV-EGISQDEQIAAQSVID-LEYDCIINVI--------------------DACHLERHLY------------------------------------------------------------------LTSQLFELGKPVVVALNMMDIAEHRGISDTEKLESLLGCSVIPIQAHKNIGIPALQQS...................................................................................................................................... 160
24 -17.6003k53_A mol:protein length:271 Ferrous iron transport protein b  ali model follow..  20  4KTVALVGNPNVGKTTIFNALTGLRQHVGNWPGVTVEKKEGIMEYREK------------------------EFLVVDLPGILTAHSIDELIARNFILD-GNADVIVDIV--------------------DSTCLMRNLFL-----------------------------------------------------------------TLELFEMEVKNIILVLNKFDLLKKKGAKDIKKMRKELGVPVIPTNAKKGEGVEELKRMIALMAEGKVTTNPIIPRYDEDIEREIKHISELL..................................................................................................... 192
25 -17.1002wia_A mol:protein length:267 FERROUS IRON TRANSPORT PROTEIN B  ali model follow..  22  4LTVGLIGNPNSGKTTLFNQLTGARQRVGNWAGVTVERKEGIFATTDH------------------------QVTLVDLPGTLTTISSQTSLDEQIACHYGDADMLINVV--------------------DASNLERNLY------------------------------------------------------------------LTLQLLELGIPCVVALNMLDIAEKQQVRDIDALAARLGCPVIPLVSTRGRGIEALKIA...................................................................................................................................... 162
26 -17.0003i8s_A mol:protein length:274 Ferrous iron transport protein B  ali model follow..  23  4LTIGLIGNPNSGKTTLFNQLTGSRQRVGNWAGVTVERKEGQFSTTDH------------------------QVTLVDLPGTLTTISSQTSLDEQIACHYGDADLLINVV--------------------DASNLERNL------------------------------------------------------------------YLTLQLLELGIPCIVALNMLDIAEKQNIREIDALSARLGCPVIPLVSTRGRGIEALKLA...................................................................................................................................... 162
27 -16.9003qq5_A mol:protein length:423 Small GTP-binding protein  ali model follow..  16  31..IVVAGRRNVGKSSFMNALVGQNVSVSDYAGTTTDPVYKSMELHP------------------------GPVTLVDTPGLDDVGELGRLRVEKARRVFYRADCGILVTDSAPTPYE--------------------------------------------------------------------------------------DDVVNLFKEMEIPFVVVVNKIDVLGEKAEELKGLYESRYEAKVLLVSALQKKGFDDIGKTISEILPGDEEIPYLGDLIDGGDLVILVVPIDLGAPKGRLIMPQVHAIREALDREAIALVVKERELRYVMENIGMTDSQVAMKVASDVPEDVELTTFSIVESRY-RGDLAYFVESVRKIEELEDGDTVVIMEGCT 322
28 -16.4003iev_A mol:protein length:308 GTP-binding protein era  ali model follow..  18  7..VAIVGKPNVGKSTLLNNLLGTKVSISPKAGTTRMRVLGVKNIPNE-----------------------AQIIFLDTPGIYEPKKSGHSMVEIAKQSLEEADVILFMIDATEGW-----------------------------------------------------------------------------------RPRDEEIYQNFIKPLNKPVIVVINKIDKIGPAKNVLPLIDEIHKKTEIVPISALKGANLDELVKTILKYLPEGEPLFPEDMITDLPLRLLAAEI------------VREKAMMLTREEVPTSIAVKINEIKPGDANPNMLVIKGEII------------VDRENLKPIIIGKKGQRLKEIGKRARQELELIL....... 272
29 -16.2004r98_A mol:protein length:271 Ferrous iron transport protein B  ali model follow..  23  4LTIGLIGNPNSGKTTLFNQLTGSRQRVGNWAGVTVERKEGQFSTTDH------------------------QVTLVDLPGTLTTISSQTSLDEQIACHYGDADLLINVV--------------------DASNLERNL------------------------------------------------------------------YLTLQLLELGIPCIVALNMLDIAEKQNIREIDALSARLGCPVIPLVATDTKNVQFVLKL...................................................................................................................................... 162
30 -15.7002dyk_A mol:protein length:161 GTP-binding protein  ali model follow..  25  3.KVVIVGRPNVGKSSLFNRLLKKRAVVADVPGVTRDLKEGVVETDRG------------------------RFLLVDTGGLWSGDKWEKKIQEKVDRALEDAEVVLFAVDGRAE-------------------------------------------------------------------------------------TQADYEVAEYLRRKGKPVILVATKVDDPKHELYLGPLYGLGF--GDPIPTSSEHARGLEEL......................................................................................................................................... 152
31 -15.5001ega_A mol:protein length:301 PROTEIN (GTP-BINDING PROTEIN ERA)  ali model follow..  18  11..IAIVGRPNVGKSTLLNKLLGQKISTSRKAQTTRHRIVGIH------------------------TEGAYQAIYVDTPGLHMEEKRNRLMNKAASSSIGDVELVIFVVEGTRWT-------------------------------------------------------------------------------------PDDEMVLNKLREGKAPVILAVNKVDNVQEKADLLPHLQFLASQLDIVPISAETGLNVDTIAAIVRKHLPEATHHFPEDYITDRSQR-ASEIIREKLMRFLGAE-EIERFVSNERGGYDINGLILVEREGQKKMVIG---------NKGAKIKTIGIEARKDMQEMFEAPVHLELWVKVKSGWADDERALRSLGYVDD 300
32 -15.1001wf3_A mol:protein length:301 GTP-binding protein  ali model follow..  14  10..VAIVGKPNVGKSTLLNNLLGVKVAISPRPQTTRKRLRGIL------------------------TEGRRQIVFVDTPGLHKPMDAGEFMDQEVYEALADVNAVVWVVDLRHPPT------------------------------------------------------------------------------------PEDELVARALKPLVGKVPILLVGNKLDAAKYPEEAMKAYHEL-AEPRMLSALDERQVAELKADLLALMPEGPFFYPEDYAKSDQTFGVAEILREEAMKRLWHE-KVEEVAERENGVLYIKAILYVERPSQKAIVIG---------EGGRKIKEIGQATRKQLEALLGKKVYLDLEVKVYPDWRKDPEALRELGYRSS 299
33 -14.9002gj8_A mol:protein length:172 tRNA modification GTPase trmE  ali model follow..  23  5MKVVIAGRPNAGKSSLLNALAGREAIVTDIAGTTRDVLREHIHI--------------------------MPLHIIDTAGLREASDEVERIGERAWQEIEQADRVLFMVDGTTTDAVD....................................................................................................................................................................................................................................................................................... 100
34 -14.3001rfl_A mol:protein length:172 Probable tRNA modification GTPase trmE  ali model follow..  23  8MKVVIAGRPNAGKSSLLNALAGREAIVTDIAGTTRDVLREHIHI--------------------------MPLHIIDTAGLREASDEVERIGERAWQEIEQADRVLFMVDGTTTDAVD....................................................................................................................................................................................................................................................................................... 103
35 -13.5003hvz_A mol:protein length:78 Uncharacterized protein  ali model follow..  23  16....................................................................................................................................................................................................................................................................................................................................................DVISLPIGSTVIDFAYAIHSAVGNRMIGAKVDG--RIVPIDYKVKTGEIIDVLTTKE 70
36 -13.2002kmm_A mol:protein length:73 Guanosine-3`,5`-bis(Diphosphate) 3`-pyrophosphohydrolase  ali model follow..  20  11....................................................................................................................................................................................................................................................................................................................................................EIKRLPQGATALDFAYSLHSDLGDHCIGAKVNH--KLVPLSYVLNSGDQVEVLSSKS 65
37 -13.0002qtf_A mol:protein length:364 GTP-binding protein  ali model follow..  24  182..IGIVGYTNSGKTSLFNSLTGLTQKVDTKLFTTMSPKRYAIPINNR------------------------KIMLVDTVGFIRGIPPQ--IVDAFLSEAKYSDALILVIDSTFSENLL------IETLQSSFEILREIGVSGKPIL........................................................................................................................................................................................................................................................... 296
38 -11.5005ucv_A mol:protein length:217 Probable GTP-binding protein EngB  ali model follow..  17  27.EIAFVGRSNAGKSSAINTLTNHVAYVSKTPGRTQHINF----------------------------ELQNGNFMVDLPGY-AVRAHWVNLLGDYLRHRKQLIGLVLIMDARHPLKEL-----------DIRMLD-HTTGRPVHILLSKADKLSKNEQIKTLSQVKKLLKPYSDRQNISVQLFSSLKKQGID............................................................................................................................................................................................................. 188
39 -11.5004dhe_A mol:protein length:223 Probable GTP-binding protein EngB  ali model follow..  15  31.EIAFAGRSNAGKSTAINVLCNQKAFASKTPGRTQHINYFSV-----------------------GPAAEPVAHLVDLPGY-AAKAHWEQLLSSYLQTRPQLCGMILMMDARRPLTEL-----------DRRMIE-APTGKPIHSLLTKCDKLTRQESINALRATQKSLDA.................................................................................................................................................................................................................................. 175
40 -11.3002ged_A mol:protein length:193 Signal recognition particle receptor beta subunit  ali model follow..  18  50.SIIIAGPQNSGKTSLLTLLTTDSVRPT---VVSQEPLSAA-------------------------DYDGSGVTLVDFPGHVK-------LSDYLKTRAKFVKGLIFMVDSTVDP-------------KKLTTTAEFLV--------------------------------------------------------------DILSITESSCENGIDILIACNKSELFTARPPSK--------------IKDALESEIQKVIERRK.................................................................................................................................... 193
41 -11.3005ady_6 mol:protein length:426 GTPASE HFLX  ali model follow..  27  200..VSLVGYTNAGKSTLFNRITEARVYAADQLFATLDPTLRRIDVADVGE-----------------------TVLADTVGFIRHLPHD--LVAAFLQETRQATLLLHVIDAADVRVQ--------ENIEAVNTVLEEIDAHEIPTL........................................................................................................................................................................................................................................................... 313
42 -11.0001sul_A mol:protein length:195 GTP-binding protein YsxC  ali model follow..  17  25.EIALAGRSNVGKSSFINSLINRKARTSSKPGKTQTLNF----------------------------IINDELHFVDVPGY-SEREAWGRMIETYITTREELKAVVQIVDLRHAPSND-----------DVQMYE-KYYGIPVIVIATKADKIPKGKWDKHAKVVRQTLNI.................................................................................................................................................................................................................................. 165
43 -11.0004aur_A mol:protein length:577 LEOA  ali model follow..  12  54LRIALLGAFSDGKTSVIAAWLGKV--------------MDDMNISMDESSDRLS--------IYKPEGLPDQCEIVDTPGLFGDKEREVDGRLV-RRYISEAHLIFYVVDATNHSDIVKWVLRDLNKLSSTIFVINKMDEVTSLTDQALFDEQAAIKKANLKGKLQRAADLTAQECEQLNIVCVASNPNGRGLTYWFTKPEHYESRSRI----------------NDLKNAATEILKTNVPEVLLVKTGMDVVKDIVIQRVTLASRHLDELNTFVEKNDEDMHRFSNDIKQSRIEVKRL--AGELFEELNLMEKQLMSQLRPLDLDDIRPFMDDE------------GYTEDGVGFKLHLRIKQSV............................... 378
44 -10.8003pqc_A mol:protein length:195 Probable GTP-binding protein engB  ali model follow..  16  25.EVAFVGRSNVGKSSLLNALFNRKAFVSKTPGKTRSINF----------------------------LVNSKYYFVDLPGY-KERMLWKRLVEDYFKNRWSLQMVFLLVDGRIPPQDS-----------DLMMVE-KSLNIPFTIVLTKMDKVKMSERAKKLEEHRKVFSK.................................................................................................................................................................................................................................. 164
45 -10.8003j8g_X mol:protein length:490 GTPase Der  ali model follow..  16  4.VVALVGRPNVGKSTLFNRLTRTRALVADFPGLTRDRKYGRAEIE-------------------------REFICIDTGGIDGTEDGETRMAEQSLLAIEEADVVLFMVDARAG-------------------------------------------------------------------------------------MPADEAIAKHLRSREKPTFLVANKTDGLDPDQAVVDFYSLG---GEIYPIAASHGRGVLSLLEHVLLPWMEDLAPQEEVDEDAEYWAQFEAEENGEEEEEDDFDPQSLPIKLAIVG--------PNVGKSTLTNRILGEERVVVYDMPGTTRDSIYIPMERD-GREYVLIDTAGVRKRGKITQAIEDANVVMLVIDAR 295
46 -10.8001mky_A mol:protein length:439 Probable GTP-binding protein engA  ali model follow..  17  3.TVLIVGRPNVGKSTLFNKLVKKKKAVEDEEGVTRDPVQDTVEWY-------------------------KTFKLVDTCGVFDNPQDIQKMKEVTLNMIREADLVLFVVDGKRG-------------------------------------------------------------------------------------TKEDESLADFLRKSTVDTILVANKAENLREFEREVKPELYSLGFGEPIPVSAEHNINLDTM-----LETIIKKLEEKGLDLESKPEITDAIKVAIVGRPNVGKSTLFNAILNKERALVSPIPGTTRDPVDDEVFIDGRKY----------VFVDTAGL-----RKSRVEPRTVEKYSNYRVVDSIEKADVVVIVLDAT 274
47 -10.7001nrj_B mol:protein length:218 Signal recognition particle receptor beta subunit  ali model follow..  18  14.SIIIAGPQNSGKTSLLTLLTTDSVRPT---VVSQEPLSAA-------------------------DYDGSGVTLVDFPGHVK-------LSDYLKTRAKFVKGLIFMVDSTVDP-------------KKLTTTAEFLV--------------------------------------------------------------DILSITESSCENGIDILIACNKSELFTARPPSK--------------IKDALESEIQKVIERR..................................................................................................................................... 156
48 -10.7001pui_A mol:protein length:210 Probable GTP-binding protein engB  ali model follow..  14  28.EVAFAGRSNAGKSSALNTLTNQKARTSKTPGRTQLINL----------------------------EVADGKRLVDLPGY-EMKRKWQRALGEYLEKRQSLQGLVVLMDIRHPLKDL-----------DQQMIE-VDSNIAVLVLLTKADKLASGARKAQLNMVREAVLA.................................................................................................................................................................................................................................. 168
49 -10.6004dcs_A mol:protein length:456 GTP-BINDING PROTEIN ENGA  ali model follow..  13  18PVVAIVGRPNVGKSTIFNRIAGERSIVEDTPGVTRDRIYSSAEWLNY------------------------DFNLIDTGGIDIGDEPFLAQIQQAEIAMDEADVIIFMVNGREG-------------------------------------------------------------------------------------TAADEEVAKILYRTKKPVVLAVNKLDNTEMRANIYDFYSLGF--GEPYPISGTHGLGLGDLLDAVAEHFKNIP---------ETKYNEEVIQFCLIGRPNVGKSSLVNAMLGEERVIVSNVAGTTRDAVDTSFTYNQQEF----------VIVDTAG-----MRKKGKVYETTEKYSVLRALKAIDRSEVVAVVLDGE 282
50 -10.6005ck4_A mol:protein length:316 Putative signal recognition particle protein  ali model follow..  11  15.SVLLIGPSGAGKTALLTLFERGPLLNPD-THTSQVPTSVELAVGANEDGTPTSYKVDLDAA----GATARKFLLIDTPGHPKAPNKKTSTDSHSDPYKSKLKAVIFLLDAAA---------------------------------------LADSDGDYLSQTASYLYDVLLSLQKRFHSRKNSRAPSSI------------------------PVLIAANKQDLFTAVPASL--------------VKSRLEHELGRIRKTR..................................................................................................................................... 241
51 -10.6003r7w_A mol:protein length:307 GTP-binding protein GTR1  ali model follow..  13  5.KLLLMGRSGSGKSSMRSIIFS---NYSAFDTRRLGATIDV-------------------EHSHLRFLGNMTLNLWDCGG--QDVFMENYFTKQKDHIFQMVQVLIHVFDVEST-----------EVLKDIEIFAKALKQLRKYSPDAKIFVLLHKMDLVQLDKREELFQIMMK---NLSETSSEFGFPNLIGFPTSIWDESLYKAWSQIVCSLIPNMSNHQSNLKKFKEIMNALEIILFERTTFLVICSSNGENSNENHDSSDNNNVLLDPKRFEKISNIMKNFKQSCTKLKSGFKTLILNNNI---YVSELSSNMVCFIVLKDMNIPQ................................................................... 292
52 -10.3004arz_A mol:protein length:310 GTP-BINDING PROTEIN GTR1  ali model follow..  13  7KKLLLMGRSGSGKSSMRSIIFS---NYSAFDTRRLGATIDV-------------------EHSHLRFLGNMTLNLWDCGG--QDVFMENYFTKQKDHIFQMVQVLIHVFDVEST-----------EVLKDIEIFAKALKQLRKYSPDAKIFVLLHKMDLVQLDKREELFQIMMK---NLSETSSEFGFPNLIGFPTSIWDESLYKAWSQIVCSLIPNMSNHQSNLKKFKEIMNALEIILFERTTFLVICSSNGENSNENHDSSDNNNVLLDPKRFEKISNIMKNFKQSCTKLKSGFKTLILNNNIYVSELSSNMVCFIVLK............................................................................ 289
53 -10.1003llu_A mol:protein length:196 Ras-related GTP-binding protein C  ali model follow..  12  15PRILLMGLRRSGKSSIQKVVFH---KMSPNETLFLESTNKI-------------------YKDDISNSSFVNFQIWDFPGQMDFFDPTFDYEMIF----RGTGALIYVIDAQDDYM------------EALTRLHITVSKAYKVNPDMNFEVFIHKVDGLSDDHKIETQRDIH................................................................................................................................................................................................................................ 149
54 -10.1003cnl_A mol:protein length:262 Putative uncharacterized protein  ali model follow..  27  100ARVLIVGVPNTGKSTIINKLKGKRA-------SSVGAQPGITKGIQWFSLEN-------------------GVKILDTPGILYKNIFSEDLAAKLL............................................................................................................................................................................................................................................................................................................. 169
55 -9.8706frk_v mol:protein length:213 SRP receptor beta subunit  ali model follow..  19  8.AVLLLGLCDSGKTLLFVRLLTGHYRDT---QTSITDSSATYRV---------------------NNNRGNSLTLIDLPG--------ESLRLQFLERFTSARAVVFVVD-------------SAAFQREVKDVAEFLY---------------------------------------------------------------QVLIDSMSLKNTPSFLIACNKQDIAMAKSAKLIQQQLEKE........................................................................................................................................................... 142
56 -9.8102fh5_B mol:protein length:214 Signal recognition particle receptor beta subunit  ali model follow..  22  9.AVLFVGLCDSGKTLLFVRLLTGQYRDT---QTSITDSSAIYKV---------------------NNNRGNSLTLIDLPG--------ESLRFQLLDRKSSARAVVFVVDSAAFQREVKDVA---------EFLYQVL-------------------------------------------------------------------IDSMALKNSPSLLIACNKQDIAMAKSAKLIQQQLEKE........................................................................................................................................................... 143
57 -9.7904ile_A mol:protein length:184 ADP-ribosylation factor-like protein 8A  ali model follow..  20  23MELTLVGLQYSGKTTFVNVIASGQFNEDMIP--TVGFNMRKITKG-------------------------VTIKLWDIGG-------QPRFRSMWERYCRGVSAIVYMVDA-----------------ADQEKIEA--------------------------------------------------------------SKNELHNLLDKPQLQGIPVLVLGNKRDLPGALDEKELLSAIQDREICCYSISCKEKDNIDI.......................................................................................................................................... 174
58 -9.7905goe_A mol:protein length:422 Mitofusin-1  ali model follow..  83MKVAFFGRTSSGKSSVINAMLWDKV----LPSGIGHITNCFLSVEGTDGDKAYLMTEGSDEKKSVKTVNQLALVLVDSPGT----DVTTELDSWIDKFCLDADVFVLVANSEST---------MNTEKHFFHKVNERLSKPNIFILNNRWDASASEPEYMEDVRRQHMERCLHFLVEELKVVNALEAQ------------------NRIFFVSAKEVLSARKQKAQGMPESGVALAEGFHARLQEFQNFEQIFEECISQSAVKTKFEQHTIKNIMDSVNLAAEDKRHYSARLPKEIDQLEKIQNNSKLLRNKAVQLENELENFTKQFLPSSNEES.............................................................. 422
59 -9.7202al7_A mol:protein length:186 ADP-ribosylation factor-like 10C  ali model follow..  19  17MELTLVGLQYSGKTTFVNVIASGQFSEDMIP--TVGFNMRKVTKG-------------------------VTIKIWDIGG-------QPRFRSMWERYCRGVNAIVYMIDA-----------------ADREKIEA--------------------------------------------------------------SRNELHNLLDKPQLQGIPVLVLGNKRDLPNALDEKQLLSAIQDREICCYSISCKEKDNIDI.......................................................................................................................................... 168
60 -9.7106D71 Entity 1(prereleased)  ali follow..  16  5VRILLVGEPRVGKTSLIMSLVSEEFPEEVPP--RAEEITIPADVTPER----------------------VPTHIVDYSE-------AEQSDEQLHQEISQANVICIVYAVNNKHS--------------------------IDKVTSRWIPLINERTDKDSRL---------------------------------------------------PLILVGNKSDLVEYSSMETILPIMNQYTETCVECSAKNLKNISEL......................................................................................................................................... 158
61 -9.6601zd9_A mol:protein length:188 ADP-ribosylation factor-like 10B  ali model follow..  20  17MELTLVGLQYSGKTTFVNVIASGQFNEDMIP--TVGFNMRKITKG-------------------------VTIKLWDIGG-------QPRFRSMWERYCRGVSAIVYMVDA-----------------ADQEKIEA--------------------------------------------------------------SKNELHNLLDKPQLQGIPVLVLGNKRDLPGALDEKELLSAIQDREICCYSISCKEKDNIDI.......................................................................................................................................... 168
62 -9.6502q3f_A mol:protein length:181 Ras-related GTP-binding protein D  ali model follow..  12  6.RILLMGLRRSGKSSIQKVVFH---KMSPNETLFLESTNKI-------------------CREDVSNSSFVNFQIWDFPGQIDFFDPTFDYEMIF----RGTGALIFVIDSQDDYM------------EALARLHLTVTRAYKVNTDINFEVFIHKVDGLSDDHKIETQRDIH-QRANDDLADAGLEKIHLSFYLTSIYDHSIFEAFSKVVQKLIP..................................................................................................................................................................................... 181
63 -9.5405owv_C mol:protein length:614 GTP-binding protein  ali model follow..  13  65VNIAIIGQFSSGKSSLLNLILGRDC----LPTGVVPVTFKPTFLRIITNIEKLAFYTDQRNEVKQAKSLHIKITLVDTPGL----NANENDTLTTLDELKNIHGAIWLSLI-----------------------------------------------------------------------------------DNAGKKSEEDAIKANLELLGENSICVLNQKDKLSAEELDNVLNYAKSV-NELIAISCKEAKDEQSYEKSNFQSLLDFLTQLDTTVLKEKFVKRKILNLCEILEDE.................................................................................................. 300
64 -9.5206ces_A mol:protein length:313 Ras-related GTP-binding protein A  ali model follow..  12  9.KVLLMGKSGSGKTSMRSIIFANYIARDT---RRLGATIDV-------------------EHSHVRFLGNLVLNLWDCGG--QDTFMENYFTSQRDNIFRNVEVLIYVFDVESRELE-----------KDMHYYQSCLEAILQNSPDAKIFCLVHKMDLVQEDQRDLIFKEREE------DLRRLSRPLECACFRTSIWDETLYKAWSSIVYQLIPNVQQLEMNLRNFAQIIEADEVLLFERATFLVISHYQCKEQRDVHRFEKISNIIKQFKLSCSKLAASFQSMEVRNSNFAAFIDIFTSNTYVMVVMSDPSIPSAATLI........................................................................... 288
65 -9.4706ces_C mol:protein length:399 Ras-related GTP-binding protein C  ali model follow..  63.RILLMGLRRSGKNSIQKVVFH---KMSPNETLFLESTNKI-------------------YKDDISNSSFVNFQIWDFPGQMDFFDPTFDYEMIF----RGTGALIYVIDAQDDYMEA-SKAYKVNPDMNFEVFIHKVDGLSDDHKIETQRDIHQRANDDLADAGLEKLHLSHSIFEAFSKVVQKLIPQLPTLENLLNIFISNSGIEKAFLFDVVSKIYIATDSSPVDMQSYELCCDMIDVVIDVSCIYGLKEDGSGSAYDKESMAIIKLNNTTVLYLKEVTKFLALVCILREESFERKGLIDYNFHCFRKAIHEVFEV.............................................................................. 369
66 -9.4702h18_A mol:protein length:193 ADP-ribosylation factor-like protein 8A  ali model follow..  20  26MELTLVGLQYSGKTTFVNVIASGQFNEDMIP--TVGFNMRKITKG-------------------------VTIKLWDIGG-------QPRFRSMWERYCRGVSAIVYMVDA-----------------ADQEKIEA--------------------------------------------------------------SKNELHNLLDKPQLQGIPVLVLGNKRDLPGALDEKELLSAIQDREICCYSISCKEKDNIDI.......................................................................................................................................... 177
67 -9.4105dn8_A mol:protein length:446 GTPase Der  ali model follow..  16  7.VIAIVGRPNVGKSTLFNYLTKSRALVADVPGVTRDRQYGETTID-------------------------QRLLLVDTGGLVDTENKEPLAETQVEQAIDESDCILFLVDAKAG-------------------------------------------------------------------------------------VPADEIIAERLRKKGKKIFLAVNKADRARAAVVQSDFYKLG---GEPYVIAAASGRGVKDLMTQVLENL---------PEEKEVIEKEVGIKIAMIGRPNVGKSTLINRLLGEERVIVYDQPGTTRDSIYIPFARNDENY----------TLIDTAG-----IRRRAKIQDYVEKFSMIKSLQAMHAADVVIFLLDAR 271
68 -9.3505gnr_A mol:protein length:421 Mitofusin-1  ali model follow..  11  76MKVAFFGRTSSGASSVINAMLWDKV----LPSGIGHITNCFLSVEGTDGVNQLAHALHMDKDLKAGCLVRV-LVLVDSPGT----DVTTELDSWIDKFCLDADVFVLVANSES----------MNTEKHFFHKVNERLSKPNIFILNNRWDASASEPEYMEDVRRQHMERCLH................................................................................................................................................................................................................................ 262
69 -9.2001puj_A mol:protein length:282 conserved hypothetical protein ylqF  ali model follow..  21  121IRALIIGIPNVGKSTLINRLAKKNAKTGDRP--------GITTSQQWVKVGK-------------------ELELLDTPGILWPKFEDELVGLRLA............................................................................................................................................................................................................................................................................................................. 190
70 -9.0904arz_B mol:protein length:341 GTP-BINDING PROTEIN GTR2  ali model follow..  10AMVLLMGVRRCGKSSICKVVFHNMQPLDT---LYLESTSNP---------------------SLEHFSTLIDLAVMELPG----QLNYFEPSYDSERLFKSVGALVYVIDSQDEYI------------NAITNLAMIIEYAYKVNPSINIEVLIHKVDGLSEDFKVDAQRDIMQRTGEELLELGLDGVQVSFYLTSIFDHSIYEAFSRIVQKLIPELSFLENMLDNLIQHSKIEKAFLFDVNSKIYVSTSNPVDIQMYEVCSEFIDVTIDLFDLYKAPVLRNSQKSSDKDNVINPRNELQNVSQLANGVIIYLRQMIRGLALVAIIRPNGTDMESCLTVAD........................................................ 311

FFAS is supported by the NIH grant R01-GM087218-01
1 2 5 3 1 0   jobs submitted since Jan 1, 2011
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Plewczynski D, Tkacz A, Godzik A., Rychlewski L. A support vector machine approach to the identification of phosphorylation sites. Cell Mol Biol Lett. 2005;10(1):73-89.