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Query: [S] COG3122 Uncharacterized protein conserved in bacteria, from COG1018

Results of FFAS03 search in COG1018
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MRRCLTCLIRQGRKGLHPNTPTAFTGILAKNYSAGLETKMAKLTLQEQLLKAGLVTSKKAAKVERTAKKSRVQAREARAAVEENKKAQLERDKQLSEQQKQAALAKEYKAQVKQLIEMNRITIANGDIGFNFTDGNLIKKIFVDKLTQAQLINGRLAIARLLVDNNSEGEYAIIPASVADKIAQRDASSIVLHSALSAEEQDEDDPYADFKVPDDLMWLast
1 -117.000[S] COG3122 Uncharacterized protein conserved in bacteria  ali  100  1MRRCLTCLIRQGRKGLHPNTPTAFTGILAKNYSAGLETKMAKLTLQEQLLKAGLVTSKKAAKVERTAKKSRVQAREARAAVEENKKAQLERDKQLSEQQKQAALAKEYKAQVKQLIEMNRITIANGDIGFNFTDGNLIKKIFVDKLTQAQLINGRLAIARLLVDNNSEGEYAIIPASVADKIAQRDASSIVLHSALSAEEQDEDDPYADFKVPDDLMW 218
2 -6.780[S] COG1422 Predicted membrane protein  ali follow..  11  32FRQSMGEAVG-----MDPVLSLVGQENFHLILLV-----AIITALYASLIQKYTIDWELMRNTQERMKVFQKEFREAQLSQNTYMLKKLEDQRKEMMEDQMKMSKQQFKPMAYISI...................................................................................................... 140
3 -6.720[S] KOG4852 Uncharacterized conserved protein  ali follow..  12  5.......LIRVSRK--RTADP------HDALILHTKRAKHGGNPLVFTLYKAAGNDLELNGARVLDLPTQEHGMELADEENPLGFVKDEAVGLVGEVEKNVKKPAEQVSLNGRLLQPVTDGGGAAAGSSDDVVYD-----YYAIHEKRGN--------PEVVGNLEQDIEGADFRFAKRDELDLGDEDDSDGPPADDEDDSNDEDNWRDY--PDE... 190
4 -6.600[TO] KOG2606 OTU (ovarian tumor)-like cysteine protease  ali follow..  10  20.........RKEKKELQAK-------IQGMKNAVPKNDKKRRKQLTEDVAKL--MEQKHREELEQLKLTTKENKIDSVAVNISNLVLENQPPRISKAQKRREKKAALEKEREERIAEAEIENLTGARHMESEKLAQILAARQLE--IKQIPSDGHCAIEDQLKEKDCALTVVALRSQTAEYMQSHVEDFLPFLTNPNTGDMYTPEEFQKYDIVNTAAW 225
5 -6.500[J] COG2147 Ribosomal protein L19E  ali follow..  14  9QRRMAAEILKCGIE-IDPTQ------------LDRVKMAMSKDDIR-ALIKEGVIKKKQ-KKGISSARVKKLKEQRKKGRRRGPGSRRGAAGARTPPKERWMATIRALRKTLKQLRDSGKIDRKVYRKLYRMAKGGAFRS.............................................................................. 136
6 -6.320[K] COG5641 GATA Zn-finger-containing transcription factor  ali follow..  12  131...CKNCLWRRDEHG-AMNA-----GLFLKLHGKPRPISLKTDVIKSRNRKSNTNHAHNLDNFRNQTLIAELKGDCNIESSGRKANRVTSEDKKKKSSQLLMGTSSTAKIS........................................................................................................... 241
7 -6.310[S] COG2928 Uncharacterized conserved protein  ali follow..  17  129.....VGLVEYPRKGVWPCTPNPTTGLMYVLKSDIVLLDMTIEDGAKLIVSAGLVAPEVKSKMVTLNGEPINGTVANPPLGSHPARRSRTASSRPNR......................................................................................................................... 250
8 -6.210[R] KOG4398 Predicted coiled-coil protein  ali follow..  10  83...CRNCV----RNGNITHSQAERPESLTEKQQRYINLQAGLKTFSTRYERL-IGQHRSNEDRLMAIKAKRKQLELLQQLISGTGQRLRVLGERRDELRRANAEKRKNLPKYPDKVKMLE.................................................................................................. 194
9 -6.210[S] COG3462 Predicted membrane protein  ali follow..  2FQKTVKCFFR-----IHSNLIWVLVGLVAVVAAVAIITSILFGGRYYNVILVLIFIYFILEAIRGPSQYDHSENVSRAEEIAKERLARGEISEEEYRKIIETIRR................................................................................................................. 134
10 -6.190[O] KOG2813 Predicted molecular chaperone, contains DnaJ domain  ali follow..  16  259KLPCPTC---QS-RGLIKCQTCDSTGSLLTSSIAVVKWKTLSKRKVSATRGAGSVPEEVFDRAEGVQLCNTQAYQCTPAYFADSYFLNRFSSEVISLRAEVPPTANVVCERHTSVVPVTRVTMEDRGKAFSFYIIGFGKEIYLKDYYPARFCWGLCPCLE.......................................................... 415

FFAS is supported by the NIH grant R01-GM087218-01
1 3 3 2 1 2   jobs submitted since Jan 1, 2011
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Berman HM, Burley SK, Chiu W, Sali A, Adzhubei A, Bourne PE, Bryant SH,Dunbrack RL Jr, Fidelis K, Frank J, Godzik A, Henrick K, Joachimiak A, HeymannB, Jones D, Markley JL, Moult J, Montelione GT, Orengo C, Rossmann MG, Rost B,Saibil H, Schwede T, Standley DM, Westbrook JD. Outcome of a workshop on archiving structural models of biological macromolecules. Structure. 2006 Aug;14(8):1211-7.