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Query: [S] COG3219 Uncharacterized protein conserved in bacteria, from COG1018

Results of FFAS03 search in COG1018
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MQPEISAQYQHRFAQAIREGEAADGLPQERLNVYIRLIRNNIHSFIDRCYTETRQYFDSEEWSRLKEGFVRDAHAQTPYFQEIPGEFLQYCQSLPLLDGILALMDFEYTQLLAEVAQIPDIPDIHYSNDSKYTPSPAAFIRQYRYDVTDDLHEAETALLIWRNAEDDVMYQTLDGFDMMLLEIMGSSALSFDTLAQTLVEFMPEDDNWKNILLGKWSGWTEQRIIIPSLSAISENMEGNSPGQNHLSALast
1 -104.000[S] COG3219 Uncharacterized protein conserved in bacteria  ali  100  1MQPEISAQYQHRFAQAIREGEAADGLPQERLNVYIRLIRNNIHSFIDRCYTETRQYFDSEEWSRLKEGFVRDAHAQTPYFQEIPGEFLQYCQSLPLLDGILALMDFEYTQLLAEVAQIPDIPDIHYSNDSKYTPSPAAFIRQYRYDVTDDLHEAETALLIWRNAEDDVMYQTLDGFDMMLLEIMGSSALSFDTLAQTLVEFMPEDDNWKNILLGKWSGWTEQRIIIPSLSAISENMEGNSPGQNHLSA 248
2 -6.730[S] COG2879 Uncharacterized small protein  ali follow..  12  1.....................................MFDSLAKAGKYLGQAAKLMIGMPDYDNYVEHMRVNHPDQTPMTY---EEF................................................................................................................................................................. 47
3 -5.680[R] COG4797 Predicted regulatory domain of a methyltransferase  ali follow..  27VRTEQYMDFNRKFRSTLLCHQNIPINRKIEFNNLKEFYENLPEPFISTTSPIMKAIL----------YVYAENISNPISLEQVAKEAFKKLGKYQLQDFLAALEQ---HFIIFIFQGYLKIFETKPHAIATITEKPKTSEFARYQAKQAYFNNVTSVFSVTNRLNDMV---GIPIHEKYILEML-DGTHNIDDIKKGVLEKINSKEFVDYVVNTSLEKFRMNYLLVE..................... 284
4 -5.640[S] KOG4100 Uncharacterized conserved protein  ali follow..  19  18..............................LYLYKSILR------LHYGLPAQARLMGDTY---VKDEFKRHKTAKPEFVKPFITEWTNYCVMLS......................................................................................................................................................... 73
5 -5.360[S] COG5592 Uncharacterized conserved protein  ali follow..  77...KLIETLAENMLKWKRSGNDDL---NLRMPLFYKTLTDHNLSEEDQIFPRWKKLEAETRENALKEAMDIILDTGLDRYSRNTGISREFLAYIEPD....................................................................................................................................................... 168
6 -5.340[F] KOG2070 Guanine nucleotide exchange factor  ali follow..  12  267...KELQTVLSTYLRPLQTSEKLSSANISYLEICS--FQQMLVQSLEEC-PEAQQRVGGPQMKTLYLTYCANHPSAVNVLTEHSEELGEFMETKGSSPGILVLTTG--------------------------LSKPFMRLDKYPTLLKELERHMEDY-----------------------RQDIQKSMAAFKNLSAQCQEVRKRKELELQILTEAIRNWEGDDI........................ 453
7 -5.210[Q] COG2854 ABC-type transport system involved in resistance to organic solvents, auxiliary component  ali follow..  26.PQQVVQGTVDELLSDIKANKAAYKADPQKL-------YATLDRILGPVVDIAKSVMTVKYSRQASPE----------------KRFEEVFKNSLMQFYGNALLEYDNQDIRVLPSSAKPNMEIRDSKGTVYPVSYTMTNLAGGWKVRNVIINGINIGKLFRD---------------QFADTMQKNRNDLEKTIAGWGEVVAKAKETAKAEEA.................................. 212
8 -5.170[U] KOG3284 Vacuolar sorting protein VPS28  ali follow..  1............................MEVKLWNDKREREMYENFAELFAIIKATINPSEYESECQKLIVHFKTLSATLKDTVPNIERFADTYK......................................................................................................................................................... 78
9 -5.090[S] COG3945 Uncharacterized conserved protein  ali follow..  13  84..........RDIINRIEARYNEFEELREDLNSLIVLLASHIDKENNVLFPTAESLLSDDENKVIYEKFERIEEERHERYIELIDTLYGRYINKKSNE...................................................................................................................................................... 175
10 -4.940[K] COG3160 Regulator of sigma D  ali follow..  27...KHLLVAYYNLVGIKPGKESYMRLNEKALDDFCQSLVDYLSAGHFSIYERILHKLEGNGQLARAAKIWPQ-------LEANTQQIMDYYDSSLE........................................................................................................................................................ 112

FFAS is supported by the NIH grant R01-GM087218-01
1 3 0 5 6 9   jobs submitted since Jan 1, 2011
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Li W, Jaroszewski L, Godzik A. Tolerating some redundancy significantly speeds up clustering of large protein databases. Bioinformatics. 2002 Jan;18(1):77-82.