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Query: [S] COG3698 Predicted periplasmic protein, from COG1018

Results of FFAS03 search in COG1018
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MDFLTFFSSAPLLLGAVKAALPQAVASTMAFSQWFVSLPPCRDFAFEATSYLICEVDPKLYSIELFWKDPVGKPFQSLHNLDAAQRAAGRTMLFAINAGMYHPDLRPVGLYVERGREMAGVRTGSGSGNFSLQPNGIFYISGGKAAVRATRDFVRKRPSTDYATQSGPMLVIDGQLHPKFQSDGTSRKTRDGVGVRKDGVAVFAISNGTVNFHTFARLFRDALGCDNALFLDGTISSLFAPAIGRNDDYWNLGPMIGVFRKRGLast
1 -90.600[S] COG3698 Predicted periplasmic protein  ali  100  1MDFLTFFSSAPLLLGAVKAALPQAVASTMAFSQWFVSLPPCRDFAFEATSYLICEVDPKLYSIELFWKDPVGKPFQSLHNLDAAQRAAGRTMLFAINAGMYHPDLRPVGLYVERGREMAGVRTGSGSGNFSLQPNGIFYISGGKAAVRATRDFVRKRPSTDYATQSGPMLVIDGQLHPKFQSDGTSRKTRDGVGVRKDGVAVFAISNGTVNFHTFARLFRDALGCDNALFLDGTISSLFAPAIGRNDDYWNLGPMIGVFRKRG 263
2 -43.800[G] COG4632 Exopolysaccharide biosynthesis protein related to N-acetylglucosamine-1-phosphodiester alpha-N-acetylglucosaminidase  ali follow..  16  79.......................................KVTPKTTEAKKSMVQKTFAYDFEKSIDPTSSY---FGTTNRETVLSMAKRKRSVVAINASGWRSNGEVMGLQIKDGVLYKDYDAATGAEACVFFDDGTMKVYGNR----EVDADILISKGARNSFAFGIWLVKDSKPRTAQMTTWNVKHPRQAIGQRSDGTLVIITVDGGITAYDMPSLFLS-EGCINAFLLDGGGSSQTAVEGKYINNIRAVVDTLTISYPDD 310
3 -6.750[O] KOG4642 Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats)  ali follow..  15  7............................................................................................................................................KEGGARLGAGGGSPEKSPSAQELKEQGNRLFVGRKYPEAAACYG------RAITRNPLVAVYY--TNRALCYLKMQQHEQALADCRRALELDGQSVKAHFFLGQCQLEMESYDEAIANLQR.. 119
4 -6.220[L] COG3780 DNA endonuclease related to intein-encoded endonucleases  ali follow..  78...........................................................................................................IGVYFGGGSLDADEKYRYRIKLKVIDKEFAEAFSNALKDIGANPRLYFESSTGRWCVEATSKELYM-KPKEELFKIGEMFPREFIRGFDSEGCFLAMSNYDLDILEFIRGLLLTKFGIKGSINLTKRKGTSVNIKGKRYFYSSDL--ELRISGIKD 245
5 -5.330[S] KOG4601 Uncharacterized conserved protein  ali follow..  35..................................................................................................................................................IDNLAKLSAHCLQLRTPLTTCEKLINSDSTLYLSWKYDEEEKVSRLMGFAKVGRKKLFLYDSQMQTYEGEILCLLDFYVHFSCQRQGVGQQIL-TEPYQLALDNPSVTLLGFMSQ.. 156
6 -5.150[S] COG2840 Uncharacterized protein conserved in bacteria  ali follow..  11  77..........................................................................................................................................................................LRSGKYPQQASLNLLRQPVETC-AQKEGLRNVLIIHGKGREAKSHANIVRSYQAYCSALPHHGGGGACYVA...................... 167
7 -5.100[R] COG1054 Predicted sulfurtransferase  ali follow..  10  64..............................................................................................GINAQISVPANRYDEFKALDQVRLNVAHEDDGKSFLKVRERIVADGIDDDSFDPANIGHYLKADQVNQMIDDPDTLFVDNAIEVPSDTFREQLPMAVDMLQHDKEKNIVMYCTGGIRCEKASAYMLHN-GFKNVYHVEGGIIEYARKAKEQGLPLKFIGKNFVFDERMG 256
8 -4.980[DO] KOG1155 Anaphase-promoting complex (APC), Cdc23 subunit  ali follow..  296...................................................ELLRNDPYRVE-NVLYAKEACAALSYLAHKVFLTDKYRPESCCII-GNYYSLKGQHEKAVMYFRRALK------------LNKKYLSAWTLMGHEYVEMKNTPAAIDAYRRAVDINP-----GQAYEMMGMPFYALH-RKSIFFLPNDSRLWIAMAKCYQTEQLYMLEEAIKCYKRAVNCTDTEGIALNQLAKLHQKLGRNEEAAYYFEK.. 502
9 -4.960[G] COG3866 Pectate lyase  ali follow..  10  104.................................................RADVLGLAAGNYVLKIVPVVNGVDAINEEATTQALTVKANKREGFAFSPAS--PMKTSSGGYNDDGTV-ASNAEILYITASNVNTVTENVVTNAKGTKTTCTGLVNILAGRQKGYDKSPLIIRMIGEIKASDITGLNEHTYIQLKGCYNVTFEATAYGWGFLIRDARNLELRNVGIMDAISLDTDNQNIWV....................... 300
10 -4.920[E] COG0070 Glutamate synthase domain 3  ali follow..  12  93......................................................................................LPEDTVHLHFQGS----AGQSFGAFIPKGMTLE-LEGDANDYLGKGLSGGKIIVYPPKGSSFIASENIIAGNVCLYGATAGEVYI-SGMV--------------ERFCVRNSGVNTVVEAVGDHGCEYMTGVVLGQTGRNFAAGMSGG............................. 224

FFAS is supported by the NIH grant R01-GM087218-01
1 3 0 6 1 2   jobs submitted since Jan 1, 2011
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Ma H, Xiong H, Liu T, Zhang L, Godzik A., Zhang Z. Aggregate formation and synaptic abnormality induced by DSCR1. J Neurochem. 2004 Mar;88(6):1485-96.