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Query: [J] KOG2364 Predicted pseudouridylate synthase, from COG1018

Results of FFAS03 search in COG1018
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MSNDKTPLVLCEVCVRQISGDAEEVTKCENSFECQLCFGIMDQAMIDEVGEKVQEELSKLPYDSMSFILALNLPVGQTLREILVSRLRPDFNGTLASVPYKVRNIDGYLKKLGSYSGKRPTLSSDLQLMITFEQEESNFSDLQFLQNQFPNDFRVGKRGRYNNNQEAPSSVSKQQLQQVTGRINEQIAKKYIFKSPTRKCTFQLQFERDPVYIAGRYCKYSRCLPQSPWSEDKDAPREPGNSVSEKVCDLLKKQFGASDSRFVTSGREDIDVRMLGTGRPFVVELRNCRTTAPVRGIKYLETLKTVQEAINVQKDVKVVSLTRVPRDVSEKLCVGEEDKRKQYCAYCYSILPISDSQFTAAQSKIPLKIVQKTPVRVMKRRALLDRERWIYSMNFLKLDDHHFEVRLETQAGTYIKEFVHGDFGRTRPSLAELLDVEHGEVDILELDVEKVDLEWPPELKDGQEPKNLVFIGFFNFQIFFGFFPEKLLast
1 -132.000[J] KOG2364 Predicted pseudouridylate synthase  ali  100  1MSNDKTPLVLCEVCVRQISGDAEEVTKCENSFECQLCFGIMDQAMIDEVGEKVQEELSKLPYDSMSFILALNLPVGQTLREILVSRLRPDFNGTLASVPYKVRNIDGYLKKLGSYSGKRPTLSSDLQLMITFEQEESNFSDLQFLQNQFPNDFRVGKRGRYNNNQEAPSSVSKQQLQQVTGRINEQIAKKYIFKSPTRKCTFQLQFERDPVYIAGRYCKYSRCLPQSPWSEDKDAPREPGNSVSEKVCDLLKKQFGASDSRFVTSGREDIDVRMLGTGRPFVVELRNCRTTAPVRGIKYLETLKTVQEAINVQKDVKVVSLTRVPRDVSEKLCVGEEDKRKQYCAYCYSILPISDSQFTAAQSKIPLKIVQKTPVRVMKRRALLDRERWIYSMNFLKLDDHHFEVRLETQAGTYIKEFVHGDFGRTRPSLAELLDVEHGEVDILELDVEKVDLEWPPELKDGQEPKNLVFIGFFNFQIFFGFFPEKL 487
2 -74.400[J] COG1258 Predicted pseudouridylate synthase  ali follow..  26  1.....................................................................................................................................MDEEQIFRAVKDMVVRHQGEMHENKVYSVSGGGTGEVDKAALKRRFGQGDWSIPYTEIMV---RVQDGVEIVVQNSPMYIYGEYIKMDRNMTQTPLTVGGR--LKCNRSVSDFKIQ-IKEFFSADDVVFIPAGREDFDVRMVE-GRPFLLTVKNPRRNLGF-----------ERLRLTLYGGLDIKNLCVVRKECKDMIFKGEGQSSKIYSAFLCCRRPLVLQK--------NYKVRQRTPLRVLHRRANLTRIKEVCILGHEKMEADYYRVVLEASAGTYIKEFVHGDLGRTAPSLSSKEN----YCDLLELDVLRVKKRSIEDLVTRRIELE.................... 307
3 -19.900[J] KOG2529 Pseudouridine synthase  ali follow..  15  40..........................................................................................................................................................................................................................SKIAELDTSQWPL--------------LLKNFDKLNIRSNHYTPLAHGSSPLNRDIKEYMKTGFINLDKPSNPSSHEVVAWIKILKVEKTGHSGTLDPKVTGCLIVCIDRATRLVKSQQSAGKEYVAIFKLHGAVSVAKVRQGLEKLRGALFQRPPLISAVKRQ---RVRTVYDSKLLDYDETMGVFWVSCEAGSYIRTMCVGLVLGVGGQMLELRRVRSGIQSERDGMVTMHDVLDAMWLYENHKDESMLRRVIKPLEGLLVNHKR.. 296
4 -16.500[J] COG0130 Pseudouridine synthase  ali follow..  15  4.........................................................................................................................................................................................................................................................................................IINLKKEAGTSHDAVFKLRKILGTKKIGHGGTLDPDVVGVLPIAVGKATRMVEFMQDEGKIYEGEITLLSLLDEKLVDEAIASLTGPITQIPPMYSAVK-ERPERQVTIYQFERTSPQLARFTFRVKCSKGTYIRTLSVGEKLGYAAHMSHLTRTSAAGLQLEDLALEEIAEKVEAGQLDFLHPLEIGTGDLVKVFL......... 243
5 -8.860[J] KOG2554 Pseudouridylate synthase  ali follow..  13  31............................................................................................................................................................................................................KIAIQFFYLGWEHDGLVQQ-------------PHTQNTVENHIMQALIKTHDWTKCDFSRCGRTDKGVSAFKQTAAMVVRSLCPGDSGVFWSDSTQEHQKVDYKASGEEKTIRVFAWAPVAQTFNARF----DCNRRTYKYSF-AKADLNLEKMRQGAELLVGEFSNFCQIDMNEKRLLQSYVRKVYEVKVEQVSTSMVELTVSGSGFLWIRYIVTGRENEQPSLISQLLDLKKYPSRLFDCGYKSEDVEWDYTLKSTVTGLQKTWATYQARSRMMENMLGEL 341
6 -8.580[AJ] KOG4393 Predicted pseudouridylate synthase  ali follow..  12  18.........................................................................................................................................................................................................WRLVIAYDGTRFAG-------------WQYQESP-----PTIQSMLEKALIQITELKELQLIGAGRTDAGVHAWGQVAHFVTPFNYTSLDSFHAAL-----------NGLLPKDIRVRELSAAVPEFHARF----SASSKVYRYQIHCAYKLNASKMREAANLFVGKHDFSAFANATREDGVPDPLKTISRFDVIQMGS---LLQLEVEGSGFLYRQVRGKEALDSDIVPMILETKDRR............................................... 246
7 -7.590[J] COG0101 Pseudouridylate synthase  ali follow..  13  1.......................................................................................................................................................................................................MRLKCTISYDGHLFNG-------------YQVQPGK-----RTVQDELEKALAVLHKSKDIPVVSSGRTDSGVHAAGQVIHFDTPLSIPAERWPYALNALL------------PDDIAVKQAEIADDGFHARF----SAVKKEYRYFVYHPDVFKRHYAYHFSYRLNVQDMREAAKHPIGTHEVQDKVRTIYELDWTETAD---GLQMRITGSGFLYNMVRGIGKISPDEVKSMLEAKDREAPGHGLYLWNVYYD................................. 246
8 -6.760[U] KOG1985 Vesicle coat complex COPII, subunit SEC24/subunit SFB2  ali follow..  256..........CRRC--MYINPFSIFIDNGHRYRCNSCVNEVPQSYDWDSFRNVQRDRWQRP-ELNYAVVDFIAPQEYMVRAPQPLVYV-----DISFVSISSGMVGTASRAILESLDRIPNKEGRAKVAFIGVDSALHFFSVSPGAEEATQLVVSDLEEPFLPRNQDLLLNLRECRQGIENLLERFQSMFATTRDSSNALGPGLKAAHRLI-IGGKICCLISSLPNV--LELREDPKLLGTNRESSLLHPNDSFYKSFAVECSTSQSQYQDVATLSCGKTQFYHRWNASRSE-DALKFASELTNYLSMEIELEAVMRVRGLRMSSNRSSDLCAFPSFPRDQSYVVEVVIEDTITKPFV----------SFQ---TAMLHTTCNGERRIRVLTISLNSMTDLYASADQVAIAQYLTVRASEKALSSTLNEARDSIISK----------LVEILEVYKKNLAGQNTGAAIPLQ-----------ISTNL 725
9 -6.570[U] COG5028 Vesicle coat complex COPII, subunit SEC24/subunit SFB2/subunit SFB3  ali follow..  164..........CRRC--SYMNPFVVFINQGRKWQCNICKNDVPFGFDQNLQGAPINRYERNEIKNSVVDYLAPVEYSVREPPPSVYVFL-----DVSQNAVKNGLLATSARTILENIEFLPNHDGRTRIAIICVDHSLHYFYV------------------PLDDDYEVSDEDDEESDGEEEDEDEEEEDVDNSETIQMFDIGDLDEPFLPMPSDELVVPLKYCKNNLETLLKKIPEIFQDTHSSKFA---LGPALKAASNLIKSTG-----------GKVEVISSTLPNTGIGKLKKRSEQGILNTPKESSQ--------LLSCKDSFYKTFTIECNKLQITVDMFLASEDYMDVATLSHLGRFSGGQTHFYPGFNATSLNDVTKFTRELSRHLSMDIS--EAVMRVRCSTGLRATSF-FGHFFNRSSDLCAFSTMPRDQSYLFGISIED..................................... 558
10 -6.480[C] COG1144 Pyruvate:ferredoxin oxidoreductase and related 2-oxoacid:ferredoxin oxidoreductases, delta subunit  ali follow..  18  51..SKCVKCYICWKCPEPAIYIKEDGFVAIDYDYCKGC-GICANECPTKAITMVREE............................................................................................................................................................................................................................................................................................................................................................................................................................................... 104

FFAS is supported by the NIH grant R01-GM087218-01
1 3 3 7 4 3   jobs submitted since Jan 1, 2011
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Pawlowski K, Rychlewski L, Zhang B, Godzik A. Fold predictions for bacterial genomes. J Struct Biol. 2001 May-Jun;134(2-3):219-31. Review.