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Query: IDP00895 gene: grxB; glutaredoxin 2 STM1165 [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2], from CSGID

Results of FFAS03 search in CSGID
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MKLYIYDHCPFCVKARMIFGLKNIPVELNVLQNDDEATPTRMIGQKMVPILQKDDSRYLPESMDIVHYVDNLDGKPLLTGKRNPAIEEWLRKVNGYVNQLLLPRFAKSAFDEFSTPAARQYFIRKKEASSGSFDNHLAHSAGLIKKIGDDLRLLDKLIVQPNAVNGELSEDDIHLFPLLRNLTLVAGIHWPTKVADYRDNMAKQTQINLLSSMAILast
1 -101.000IDP00895 gene: grxB; glutaredoxin 2 STM1165 [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2]  ali  100  1MKLYIYDHCPFCVKARMIFGLKNIPVELNVLQNDDEATPTRMIGQKMVPILQKDDSRYLPESMDIVHYVDNLDGKPLLTGKRNPAIEEWLRKVNGYVNQLLLPRFAKSAFDEFSTPAARQYFIRKKEASSGSFDNHLAHSAGLIKKIGDDLRLLDKLIVQPNAVNGELSEDDIHLFPLLRNLTLVAGIHWPTKVADYRDNMAKQTQINLLSSMAI 215
2 -89.000IDP02752 gene: grxB; glutaredoxin 2 [Francisella tularensis subsp. tularensis SCHU S4] FTT0650c [Francisella tularensis subsp. tularensis SCHU S4]  ali follow..  30  1MKIYLYHHCPYCIKVRLVADLSNFDYQMIILANDDEKAHIDRIGSKQVPFLEKDDGTFIKESDEICKFIAKVQNFEIAESTIDDFVKGCITDLEPHYRRIIYPRIPHHPRNDFPTQSAKEYFINKKSQYIGDFDALLRNPYDSIRAINQILAKIDPFIKTPFINSEKFSWDDINIFPIFFILTMSKDLEIPTNITNYIKNIEAKTNIELY..... 214
3 -61.800IDP91217 gene: sspA; stringent starvation protein A, regulator of transcription [Francisella tularensis subsp. tularensis SCHU S4] FTT_0458 [Francisella tularensis subsp. tularensis SCHU S4]  ali follow..  12  4VTLYTTKYCPYSLRARIALAEKKMSTDIVEAGDLEPAMIKKITPNGVFPVLM-EKDYSINNRKALLIYIDERFPAPSLLPN-VVNERIKIRLSLDKIDNEWYPVLDQIRKHRSDQ----------------------KMLESMFKDLKESLLAMEKAFGSEFFISSGFTLADCYIAALIICLEAEG--DEYGAIYEYKKRLFARDSVK....... 190
4 -61.700IDP91540 gene: sspA; stringent starvation protein A [Francisella novicida U112] FTN_0549 [Francisella tularensis subsp. novicida U112]  ali follow..  12  4VTLYTTKYCPYSLRARIALAEKKMSTDIVEAGDLEPAMIKKIAPNGVFPVLM-EKDYSINNRKALLIYIDERFPAPSLLPN-VVNERIKIRLSLDKIDNEWYPVLDQIRKHRSDQ----------------------KMLESMFKDLKESLLAMEKAFGSEFFISSGFTLADCYIAALIICLEAEG--DEYGAIYEYKKRLFARDSVK....... 190
5 -60.400IDP01516 gene: sspA; stringent starvation protein A VC0576 [Vibrio cholerae O1 biovar El Tor str. N16961]  ali follow..  17  11MTLFSSASDMYSHQVRIVLAEKGVSFEVELVDENNLPALIELNPYKTVPTLV-DRELALYDSKIIMEYLDERFPHPPLMPV-YPVARGNSRLMIYRIERNWYSLAEKVVNGS-------------------------EVAENARNKLRNDLLTLGPVFEFEYFMSEEFSLIDCYLAPLLWRLPVLGIGPGSKELKVYMNRVFERDSFL....... 197
6 -60.300IDP91539 gene: mglA; macrophage growth locus, protein A [Francisella novicida U112] FTN_1290 [Francisella tularensis subsp. novicida U112]  ali follow..  11  1MLLYTKKDDIYSDIVRMILLIKGANAKIVDVSKEENSELNIITPNGNIPTLS-TDDFAVYRLSVIIEAIEDLYPFPPMFPV-FPKQRANARILLEYVNKTFLQNIIKLQSPDLDEKQA---------------NEIKMLMQRDIISTYKTIVSEREVNAESNPDAQNINVLTLIITFVFYYFIKLK--TKDKNIIKEIKELLSEPNFI....... 197
7 -60.100IDP91216 gene: mglA; macrophage growth locus, subunit A [Francisella tularensis subsp. tularensis SCHU S4] FTT_1275 [Francisella tularensis subsp. tularensis SCHU S4]  ali follow..  11  1MLLYTKKDDIYSDIVRMILLIKGANAKIVDVSKEENSELNIITPNGNIPTLS-TDDFAVYRLSVIIEAIEDLYPFPPMFPV-FPKQRANARILLEYVNKTFLQNIIKLQSPDLDEKQA---------------NEIKMLMQRDIISTYKKIVSEREVNAESNPDAQNINVLTLIITFVFYYFIKLK--TKDKNIIKEIKELLSEPNFI....... 197
8 -52.700IDP00943 gene: yliJ; putative glutathione S-transferase STM0862 [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2]  ali follow..  19  2ITLWGRNNSTNVKKVLWTLEELELPYDQILAGGNQDADYLAMNPNGLVPLLKDDEDLLLWESNAIVRYLAAQYGQNRLWVD-NPARRAEGEKWMDWANQTLSPAHRVILMGLVRTPPE---------------KRDQAAIEAGIEKCDSLFALLDDALAHPWFSGDNFGTGDIAIAPFVYNLLNVGKWTPRPNLERWYQQLTERPAFRKVVMIPV 207
9 -49.600IDP01081 putative glutathione S-transferase STM4267 [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2]  ali follow..  12  2LTVHHLNQS--SQRILWALEELALPYQIVRYQREKPPALKKVHPLGKSPVIE-DHGMVIAESGAILEYLQDTYDSIGRFKPADAQGKQHYRFWLHYAEGSLMPLLLMRLLFTSLGKPPVPLGLRTLGGV----IGKGAQKAYLNPQLETHARFIDGHLANPWFAGEQLSMADIQMSFPLFALLARGGIAHLDHINAWKARVEMRPAWQRAIQQG. 214
10 -43.900IDP00887 gene: yfcG; putative glutathione S-transferase STM2349 [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2]  ali follow..  13  2IDLYYAP-TPNGHKITLFLEEAELAYRLLKVDIQFRPDFLAISPNNKIPAIVDGQPLSLFESGEILLYLAEKSGK---LLSGELRERHTTLQWLFWQVGGLGPMLGQNHHFNHFAPQAIPY----------AIERYQVETQRLYNVLNKRLE------TSPWLGGDHYSIADIASWPWVNAHQRQRDLDTYPAVYNWFERIRTRPATA....... 200
11 -40.400IDP06287 glutathione S-transferase [Streptococcus pneumoniae TIGR4] NP_345997 [Streptococcus pneumoniae TIGR4]  ali follow..  13  43FQLYSLG-TPNGVKVTILLEEKEAAYDLYKIAIQFGSDFVKLNPNSKIPALLDTENVRVFESAHILLYLAEKFGA---FLPSNPVEKVEVLNWLFWQAGAAPFLGGGFGHFFNYAPEKLEY-----------------PINRFTMEVKRQLDLLDKELAQPYIAGNDYTIADIAIWSWYGQLVQGNDASSYQNLVKWAEKIANRPAVK....... 252
12 -39.200IDP01774 putative glutathione S-transferase YghU [Yersinia pestis CO92] YPO3639 [Yersinia pestis CO92]  ali follow..  12  46LQLYSMG-TPNGQKVTILLEEKGAEYDAHLIRIQFSSGFVSINPNSKIPALMDTPPVRVFESGAILLYLADKFGH---FLPKSHAARTEALNWLFWLQGAAPYLGGGFGHFYHYAPVKIEY----------AIDRFTMEAKRQLDLLNTQLK------THEYIAGDEYTIADIAIWPWYGSLVLG-DVKSYPHLIRWTETIAKRPAVQ....... 254
13 -22.900IDP01316 glutaredoxin, putative VC1616 [Vibrio cholerae O1 biovar El Tor str. N16961]  ali follow..  22  4VVLYIKDKCPHCKDAQRYLDSKGIKYRLCNAKMERGRKELDALGARSVPVLKIGDRLM-WNHTNFERIYSS................................................................................................................................................ 75
14 -20.700IDP01801 gene: grxA; glutaredoxin 1 [Francisella tularensis subsp. tularensis SCHU S4] FTT0533c [Francisella tularensis subsp. tularensis SCHU S4]  ali follow..  19  3VKIYTRNGCPYCVWAKQWFEENNIAFDETIIDDYAQRSKFVIFPISTVPQIFI-DDEHIGGFTELKANADKILNKK........................................................................................................................................... 86
15 -19.800IDP01063 gene: grxC; glutaredoxin 3 STM3702 [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2]  ali follow..  18  4IEIYTKATCPFCHRAKALLNSKGVSFQEIAIDGDAREEMIKRSGRTTVPQIFIDAQHILDARGGLDPLLR................................................................................................................................................. 83
16 -9.130IDP00581 putative arsenate reductase YPO3070 [Yersinia pestis CO92]  ali follow..  4VTIYHNPRCSKSRETLALVEQQGITPQVVLYSVDKLKELLQQLGFSDARQLMRTKEDLYKTGLTQDQLLQAMADNPKLIER...................................................................................................................................... 95

FFAS is supported by the NIH grant R01-GM087218-01
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Li W, Jaroszewski L, Godzik A. Tolerating some redundancy significantly speeds up clustering of large protein databases. Bioinformatics. 2002 Jan;18(1):77-82.