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Query: IDP02143 gene: clpX; ATP-dependent Clp protease, ATP-binding subunit ClpX [Coxiella burnetii RSA 493] CBU_0739 [Coxiella burnetii RSA 493], from CSGID

Results of FFAS03 search in CSGID
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MSSDEKLQILYCSFCGKSQHQVRKLIAGPAVFVCNECVDLCNDIIREEEIAQAGGAQKKLPTPPEIHRMLDEYVIGQEFAKKVLSVAVYNHYKRLGNQTKKDSVEISKSNILLIGPTGSGKTLLAQTLAKILDVPFAIADATTLTEAGYVGEDVENIIQKLLQKCNYDVEKAKTGIIYIDEIDKIARKTDSPSLTRDVSGEGVQQALLKLIEGTVASIPPQGGRKHPQQEYLQVDTSNILFICGGAFADLHKIIQRRTDKSGIGFAAEVRPKEDFSREASKLIKQTEPGDLIKYGLIPEFVGRLPIITTLEELDEDALMRILTEPKNALVKQYRKLFEFEGVEIDFREDALKAIAKRAIQQKTGARGLRSIVEHTLLDLMYDLPGVAAGLRKVVIDSGVIDQASPPIFIYHHEKASRKVAQELast
1 -112.000IDP02143 gene: clpX; ATP-dependent Clp protease, ATP-binding subunit ClpX [Coxiella burnetii RSA 493] CBU_0739 [Coxiella burnetii RSA 493]  ali  100  1MSSDEKLQILYCSFCGKSQHQVRKLIAGPAVFVCNECVDLCNDIIREEEIAQAGGAQKKLPTPPEIHRMLDEYVIGQEFAKKVLSVAVYNHYKRLGNQTKKDSVEISKSNILLIGPTGSGKTLLAQTLAKILDVPFAIADATTLTEAGYVGEDVENIIQKLLQKCNYDVEKAKTGIIYIDEIDKIARKTDSPSLTRDVSGEGVQQALLKLIEGTVASIPPQGGRKHPQQEYLQVDTSNILFICGGAFADLHKIIQRRTDKSGIGFAAEVRPKEDFSREASKLIKQTEPGDLIKYGLIPEFVGRLPIITTLEELDEDALMRILTEPKNALVKQYRKLFEFEGVEIDFREDALKAIAKRAIQQKTGARGLRSIVEHTLLDLMYDLPGVAAGLRKVVIDSGVIDQASPPIFIYHHEKASRKVAQE 422
2 -104.000IDP01666 gene: clpX; ATP-dependent protease ATP-binding subunit [Bacillus anthracis str. `Ames Ancestor`] GBAA4704 [Bacillus anthracis str. `Ames Ancestor`]  ali follow..  58  1MFKNDEKGQLKCSFCGKTQTQVRKLVAGPGVYICDECIELCTEIVQEELAKDEEVEFKDVPKPVEIREILDEYVIGQDNAKKALAVAVYNHYKRINSNSKIDDVELAKSNIALIGPTGSGKTLLAQTLARILNVPFAIADATSLTEAGYVGEDVENILLKLIQAADYDVEKAEKGIIYIDEIDKVARKSENPSITRDVSGEGVQQALLKILEGTVASVPPQGGRKHPHQEFIQIDTTNILFICGGAFDGIEPIIKRRLGEKVIGFGSEKKNADVN---EKHVLSHVLPEDLLRFGLIPEFIGRLPVIANLEPLDEDALVDILTKPKNALVKQFQKLLELDDVELEFEEGALIEIAKKAIERKTGARGLRSIIEGLMLEVMFELPSR-KDIEKCILTKETVADNAAPKLVLQDGTVLDTKTS. 418
3 -104.000IDP95071 ATP-dependent protease ATP-binding subunit ClpX [Peptoclostridium difficile 630] YP_001089820 [Peptoclostridium difficile 630]  ali follow..  58  1MSKYEEKRQLKCSFCGKNQDQVRRLIAGPNVYICDECVELCDEIIQEEIEDTIDEDTTSLPKPKEMMEILNDYVIGQEKAKKALSVAVYNHYKRIYSKKSSKDIEIQKSNILLLGPTGSGKTLLAQTLARTLNVPFAMADATSLTEAGYVGEDVENILLKLIQAADFDIEKAERGIIYIDEIDKIARKSENPSITRDVSGEGVQQALLKILEGTVANVPPQGGRKHPHQEFLKIDTTNVLFILGGAFDGLEKIIQKRGGDKTLGFGAKIESKKELD--LGKLYEKVLPEDLLKYGIIPEFIGRIPVLATLELLDEDALMQILQEPKNALVKQYKKLLELDDVELEFEEGALRAIAKKAIERNTGARGLRSIVESVMMETMFEVPSR-DNIKKVIVTEKSVNEDSVNPIIVLKDQEESA.... 416
4 -103.000IDP00680 gene: clpX; ATP-dependent protease ATP-binding subunit SACOL1721 [Staphylococcus aureus subsp. aureus COL]  ali follow..  57  1MFKNEDEENLKCSFCGKDQDQVKKLVAGSGVYICNECIELCSEIVEEELAQNTSEAMTELPTPKEIMDHLNEYVIGQEKAKKSLAVAVYNHYKRIQQLPKEDDVELQKSNIALIGPTGSGKTLLAQTLAKTLNVPFAIADATSLTEAGYVGDDVENILLRLIQAADFDIDKAEKGIIYVDEIDKIARKSENTSITRDVSGEGVQQALLKILEGTTASVPPQGGRKHPNQEMIQIDTTNILFILGGAFDGIEEVIKRRLGEKVIGFSSNEADKYDEQ----ALLAQIRPEDLQAYGLIPEFIGRVPIVANLETLDVTALKNILTQPKNALVKQYTKMLELDDVDLEFTEEALSAISEKAIERKTGARGLRSIIEESLIDIMFDVPSN-ENVTKVVITAQTINEETEPELYDAEGNLINNSKTS 419
5 -101.000IDP06262 gene: clpX; ATP-dependent protease ATP-binding subunit ClpX [Streptococcus pneumoniae TIGR4] NP_346016 [Streptococcus pneumoniae TIGR4]  ali follow..  54  1MSTNRKNDMVYCSFCGKNQEEVQKIIAGNNAFICNECVELAQEIIREELVEEVLADLSEVPKPIELLHILNHYVIGQDRAKRALAVAVYNHYKRINFREESEDVDLQKSNILMIGPTGSGKTFLAQTLAKSLNVPFAIADATALTEAGYVGEDVENILLKLLQVADFNIERAERGIIYVDEIDKIAKKSENVSITRDVSGEGVQQALLKIIEGTVASVPPQGGRKHPQQEMIQVDTKNILFIVGGAFDGIEEIVKQRLGEKVIGFGQNNKAIDENS----SYMQEIIAEDIQKFGIIPELIGRLPVFAALEQLTVDDLVRILKEPRNALVKQYQTLLSYDDVELEFDDEALQEIANKAIERKTGARGLRSIIEETMLDVMFEVPSQ-ENVKLVRITKETVDGTDKPILETA........... 410
6 -94.500IDP02333 gene: clpX; ATP-dependent protease ATP-binding subunit [Francisella tularensis subsp. tularensis SCHU S4] FTT0625 [Francisella tularensis subsp. tularensis SCHU S4]  ali follow..  58  2......AKILYCSFCGKSQQEVKNIISGRDGNICNECVSCAEKIRSTGSTSAEDISFEKLPKPVEIKKYLDDYIIGQDNAKKVLSVAVYNHYKRITSNLTDDDTELKKSNVLLIGPTGSGKTLFAQTLAKLLNVPFAIADATTLTEAGYVGDDVENIIVRLLQNADFDVAKAQKGIIYIDEIDKIARKSESTSITRDVSGEGVQQALLKLIEGTVSSVPPKGGRKHPNQDMIQVDTSDILFICGGAFAGIEKVIKHRMDKVSIGFNSDVIQQKNSLD-SDKLMQKIESEDLTRFGLIPELIGRLPIVTVLNELKEEDLVRILTEPKNALIKQYIKLFKFDNVNIEFTDQALVEIAKKAITKKTGARGLRTILENVLLEVMFHIPSS-EDIEKVIINDKVILEQQEPILATKTQQQKQLKD.. 415
7 -68.600IDP00672 gene: hslU; ATP-dependent protease ATP-binding subunit SACOL1271 [Staphylococcus aureus subsp. aureus COL]  ali follow..  28  3.......................................................TAGIRLTPKEIVSKLNEYIVGQNDAKRKVAIALRNRYRRSLLDEESKQ-EISPKNILMIGPTGVGKTEIARRMAKVVGAPFIKVEATKFTEVGYVGRDVESMVRDLVDVSVRLVKAQKKSLVQDEATAKANEKLVKLLVPSMKKKASQTNNPLESLFGGAIPNFGQNNEDEEEPDQESANQEALELAEQMGIIFIDEIDKVATNNHNSGQDVSRQGVQRDNTEHMLFIGAGAFHVSKPSDLIPELQGRFPIRVELDSLSVEDFVRILTEPKLSLIKQYEALLQTEEVTVNFTDEAITRLAEIAYQDNIGARRLHTILEKMLEDLSFEAPS--MPNAVVDITPQYVDDKLKSISTNKD.......... 461
8 -65.000IDP01995 gene: hslU; heat shock protein HslVU, ATPase subunit HslU [Coxiella burnetii RSA 493] CBU_2012 [Coxiella burnetii RSA 493]  ali follow..  27  4.............................................................TPREIVAELDKFIIGQNDAKRAVAIALRNRWRRMQLGEELRR-EIFPKNILMIGPTGVGKTEIARRLSDLAGAPFLKIEATKFTEVGYVGRDVESIIRDLVDVAKMTREKAIRQVKSLAEEAAEERVLDALIPPARGGFQGEPTAEEKPTEKKESATRQGEEEAAKLVDEDQIKSTALASVEQNGIVFIDEIDKIVKREGAVGADVSREGVQRDKTDHILFIASGAFHIAKPSDLVPELQGRFPIRVELKALTADDFVRILTEPKASLTEQYTELLKTENFGLSFTKDGIKRLAEIAYQENIGARRLHTIMERLLEEVSFEATD--KQGESITIDADYVNKQLKKLAEDEDLSR....... 444
9 -63.700IDP02473 gene: hslU; ATP-dependent protease ATP-binding subunit [Bacillus anthracis str. `Ames Ancestor`] GBAA3967 [Bacillus anthracis str. `Ames Ancestor`]  ali follow..  28  6.............................................................TPRQIVEKLDQYIIGQKDAKKAVAVALRNRYRRSKLAEN-LRDEIAPKNILMIGPTGVGKTEVARRMAKLVGAPFIKVEATKFTEVGYVGRDVESVERKLAAGLLEDEIVSIEVTEQQSSMFDMLQGTGMEQM-GMNFQDALGSFMPKKTKKRKLSVKEARKVLTNEEAQRLIDMDEVTQEAVYRAEQLGIIFIDEIDKPIVEGSNVATKYGSVKTDYILFVAAGAFHMSKPSDLIPELQGRFPIRVELTKLSTDDFVKILIEPDNALIKQYMALLATEGIEIEFSDEAIRKIAEIAYQDNIGARRLHTIMEKLLEDLSFEASE--ITLEKITITPQYVEEKLATIAKNKDVSQ....... 460
10 -60.600IDP01620 gene: hslU; ATP-dependent protease ATP-binding subunit [Francisella tularensis subsp. tularensis SCHU S4] FTT0687c [Francisella tularensis subsp. tularensis SCHU S4]  ali follow..  25  2.........................................................TQIMTPKTIVHELERHIIGQNDAKKAVAIALRNRWRRMQLDNEMRQ-EVTPKNILMIGPTGVGKTEIARRLAKLADAPFIKVEATKFTEVGYVGKDVESIIRDLVETAVKMKREEAKEKVTEKAARLAEDRIPGMEDMTSQLQDLFSSLSTDKKKNKKMRIKDAIKLAQDEEAAKLVNEEDIKARALEAVEQNGIVFLDEIDKVCRKSSNSGADVSREKTDHILFIASGAFHVAKPSDLIPELQGRLPIRVELKSLEIEDFVRILREPDCSILKQYIALMKTEGIDLSFEEDAIRKIAEIAYKENIGARRLHTVMERLLEKISFDAPE--LVEKNINITTDYVNEKLGNLVKNKDLSQ....... 452
11 -43.500IDP01335 gene: clpA; ATP-dependent Clp protease ATP-binding subunit VC1144 [Vibrio cholerae O1 biovar El Tor str. N16961]  ali follow..  18  424..................................VGVAEIESMVAKMARIPEKSVSSSDKDILKNLDQKMKMLVFGQDAAIDVLTEAIKLTRAGL------GAEHKPVGSFLFAGPTGVGKTEVTLQLSKLLGIELLRFDMSEYGERHSVGAPPGYVGYDQGGLLTDAVIKHPHSVVLLDEIEKA--------------HPDIFNLLLQVMDNGTLTDNNGR----------KADFRNVILVMTTNAGV------AETVKKSIGLIQQDNSH--------------DAMSEIKKVFTPEFRNRLDHIIWFNSLDERVIHQVV----DKFIVELQAQLDARGVSLEVSEDARHWLAVKGYDREMGARPMGRVIQEQLKKPLANELLFGSLVDGGTVKVTLSDDRLAFEYFGTREEV....... 754
12 -43.100IDP00697 ATP-dependent Clp protease, putative SACOL2563 [Staphylococcus aureus subsp. aureus COL]  ali follow..  22  383..................................ATVHDISDTIQRLTGIPVSQMDDNDIERLKNISNRLRSKIIGQDQAVEMVSRAIRRNRAGF------DDGNRPIGSFLFVGPTGVGKTELAKQLAIDLKDALIRLDMSEYSDTTAVGTTAGYVGYDDSNTLTEKVRRNPYSVILFDEIEKA--------------NPQILTLLLQVMDDGNLTDGQGN----------VINFKNTIIICTSNAGF----------------------------GNGNDAEEKDIMHEMKKFFRPEFLNRFNGIVEFLHLDKDALQDIV----NLLLDDVQVTLDKKGITMDVSQDAKDWLIEEGYDEELGARPLRRIVEQQVRDKITDYYLDHTDVKHVDIDVE........................ 692
13 -42.500IDP02389 gene: clpC; endopeptidase Clp ATP-binding chain C [Listeria monocytogenes EGD-e] lmo0232 [Listeria monocytogenes EGD-e]  ali follow..  20  470..................................VTEDIVAEVVASWTGIPVAKLAETETNKLLNMEKLLHERVIGQDAAVKAVSLAVRRARAGL------KDPKRPIGSFIFLGPTGVGKTELARALAESMEDSMIRIDMSEYMEKFSTGAPPGYVGYEEGGQLTEKVRQKPYSVVLLDEIEKA--------------HPDVFNMLLQVLDDGRLTDSKGR----------VVDFRNTVIIMTSNIGA-----QEMKQDKSMGFNVTDPLKDHKA-------MEHRVLQDLKQAFRPEFINRIDETIVFHSLQEKELKQIVTL----LTAQLTKRLAERDIHVKLTEGAKSKIAKDGYDPEYGARPLKRAIQKEVEDMLSEELLRGNIKVGDYVEIGVKDGKLEVRKKDAPKKKTTSKKVK 818
14 -42.100IDP02671 gene: clpE; ATP-dependent protease [Listeria monocytogenes EGD-e] lmo0997 [Listeria monocytogenes EGD-e]  ali follow..  22  391..................................IQASDIQAIIEEKTGIPVGRLQEDEQSKMKNLERNLTGKVIGQEDAVKKVAKAIRRSRVGL------KSKNRPIGSFLFVGPTGVGKTELGRTLARELSEAMIRLDMSEFMEKHSIGSPPGYVGHEEAGQLTEKVRRNPYSIILLDEIEKA--------------HPDVQHMFLQILEDGRLTDSQGR----------TVSFKDTVIIMTSNAGA-------TDTEASVGFNTTTETKLE---------KGSDILAKLGAYFKPEFLNRLDSVIEFKSLEKDDLVQIIDL----MLVDLNEMLAQEGVTIDVSKEVKEHLIDLGYDPKFGARPLRRTIQEHLEDTIADSLIDQPEAKNLVATLNDNKE.................... 715
15 -42.000IDP01877 negative regulator of genetic competence ClpC/MecB [Bacillus anthracis str. `Ames Ancestor`] GBAA0080 [Bacillus anthracis str. `Ames Ancestor`]  ali follow..  20  472..................................VTVEDIANVVSTWTRIPVSKLAQTETDKLLNLESILHDRVIGQDEAVVAVAKAVRRARAGL------KDPKRPIGSFIFLGPTGVGKTELARALAESMEDAMIRIDMSEYMEKHSTGSPPGYVGYEEGGQLTEKVRRKPYSVVLLDEVEKA--------------HPDVFNILLQVLEDGRLTDSKGR----------TVDFRNTIVIMTSNVGA-----EALKRNKHLGFNVQDESRDYSD-------MKGKVMDELKKAFRPEFLNRIDEIIVFHMLEKKHIQEIVTL----MVNQLVNRLKEQEIELHLTEGAISAIADKGFDREYGARPLRRAIQKHVEDRLSEELLKGAIEKGQKVIFDVEGESFVIHSAEKVK......... 811
16 -41.300IDP91438 ClpB protein [Vibrio vulnificus CMCP6] VV1_0482 [Vibrio vulnificus CMCP6]  ali follow..  18  531..................................VTDNEIAEVLSKQTGIPVSKMLEAEKEKLLRMEEVLHKRVIGQKEAVEVVANAIRRSRAGL------SDPNKPIGSFLFLGPTGVGKTELCKTLANFMEDAMVRIDMSEFMEKHSVGAPPGYVGYEEGGYLTEAVRRKPYSVILLDEVEKA--------------HPDVFNILLQVLDDGRLTDGQGR----------TVDFRNTVVIMTSNLGS--------------------SRIQENFAMLDYQGIKEQVMEVVTKHFRPEFLNRVDETVVFHPLGQDHIKSIAAIQ----LNRLANRMEEHGYPLEVSDKALELIAQVGFDPVYGARPLKRAIQQSIENPLAKSILAGSVLPDKKIQLIVNNDQ................... 852
17 -40.600IDP02116 gene: clpB; clpB protein [Coxiella burnetii RSA 493] CBU_0094 [Coxiella burnetii RSA 493]  ali follow..  16  533..................................VTEEEVAEVVSKWTHIPVSKMLEGEREKLLHMETELHKRVIGQDEAVNAVANAIRRSRAGL------SDPNRPVGSFLFLGPTGVGKTELCKALAVFLEDAMVRIDMSEFMEKHSVGAPPGYVGYEEGGYLTEAIRRRPYSVILLDEIEKA--------------HNDVFNVLLQVLDDGRLTDGQGR----------TVDFRNTVIVMTSNLGS---------------------DLIREFSGENYDKMKDAVMEVVAQHFRPEFINRIDEAVVFHSLKKEQIRNIAIIQ----IDRIKKRLKEKDYQLTISDDALDYLSELGYDPVYGARPLKRVLQQQLENPLSQKILEGKFVPGSLINIEKKGEQ................... 853
18 -40.300IDP04143 gene: clpB; Clp ATPase [Yersinia pestis CO92] YPO3275 [Yersinia pestis CO92]  ali follow..  18  531..................................VTEIEVAEVLARWTGIPVSRMLKSERDKLLRMEQDLHQRVIGQDEAVEAVSNAIRRSRAGL------SDPNRPIGSFLFLGPTGVGKTELCKALATFLDDAMVRIDMSEFMEKHSVGAPPGYVGYEEGGYLTEAVRRRPYSVILLDEVEKA--------------HPDVFNILLQVLDDGRLTDGQGR----------TVDFRNTVVIMTSNLGS--------------------DLIQEHFGQMNYSEMKTVVMDVVSHHFRPEFINRIDEVVVFHPLGRAHLASIANIQ----LERLYKRLEERGYEVKITQPALEFLGEAGFDPVYGARPLKRAIQQEIENPLAQQILSGKLIPGIPVTLDVENGH................... 852
19 -39.900IDP02556 gene: clpB; ClpB protein [Francisella tularensis subsp. tularensis SCHU S4] FTT1769c [Francisella tularensis subsp. tularensis SCHU S4]  ali follow..  17  533..................................VTENEIADVVSKATGIPVSKMMEGEKDKLLNMESFLHKRVIGQDQAIKAVSNAVRRSRSGL------SDPNRPIGSFMFLGPTGVGKTELTKALAEFLEDAMLRVDMSEFMEKHSVGAPPGYVGYEQGGYLTEHVRRKPYSVILLDEVEKA--------------HADIFNILLQVLDDGRLTDGQGR----------TVDFKNTVIVMTSNLGS---------------------HRIQEMQGQDYETVKSAVMEMVLSHFRPEFVNRVDDAIVFEPLNKEMITEIAKIQ----IKRLEKRLADLSIGLEVTTGAMDKLADAGFDPVFGARPLKRAIQNNLENPLALKLLDGEFKAEDKIVVDIDANNN.................. 854
20 -37.400IDP01651 gene: clpB5; Clp ATPase [Yersinia pestis CO92] YPO2946 [Yersinia pestis CO92]  ali follow..  14  553..................................VNAEVIASIVADWTGIPVGQMLKDDIRAVMELPQRLEARVIGQPHALMQLGENIMTARAGL------SDPRKPLGVFMLVGPSGVGKTETALAIAESMEQNMITINMSEYQESHTVGSPPGYVGYGEGGVLTEAVRRKPYSVVLLDEIEKA--------------HSDVHELFFQVFDKGQMEDGEGR----------FIDFKNTILLLTSN----------------VGSELLSNLLADPDTAPDQDGILSALQPELLKVFPAAFLGRVT-VIPYLPLQQDALQHIVRLHLDRIGARLYS---QHQLTLKYSDEVVEDVVSRCAVSETGARMLIRYIEQNITPKIGKYILGDSDVKPEQIIFVHKNENGFVIALQCKDDEN...... 891
21 -37.400IDP92126 clp ATP-binding chain B1, putative [Toxoplasma gondii ME49] TGME49_068650 [Toxoplasma gondii ME49]  ali follow..  17  557..................................VTAEDIAQVVGSWTGIPVSRLVEGEREKLLGLEKALNDRVIGQEEGVRSVAEAIQRSRAGL------CDPNRPIASLVFLGPTGVGKTELCKALARQLEEALLRFDMSEYMEKHSTGAPPGYIGFDKGGQLTEAVRRRPYSVLLFDEMEKA--------------HPEVFNIFLQILEDGILTDSHGH----------TVSFKNCIIIFTSNMGS--------------------DLLLQASGTKDREEVTQALMEIVRRHLRPELVNRMDEFVVFNPLSEANLFGIFDLE----VAKLQARLTDRRLTLSVTHRAKADIVQAAYDPNFGARPLRRAVQHTLETPLSRLILSGSISNGRRVGVASKQEELPVSSEKIEDSKIPENLQF 897
22 -37.400IDP00663 gene: clpB; ATP-dependent Clp protease, ATP-binding subunit ClpB SACOL0979 [Staphylococcus aureus subsp. aureus COL]  ali follow..  17  539......................................EIGDIVSQWTGIPVSKLVETEREKLLHLSDILHKRVVGQDKAVDLVSDAVVRARAGI------KDPNRPIGSFLFLGPTGVGKTELAKSLAASLEKHMIRIDMSEYMEKHAVGAPPGYIGHDEGGQLTEAVRRNPYSVILLDEVEKA--------------HTDVFNVLLQILDEGRLTDSKGR----------SVDFKNTIIIMTSNI------------------GSQVLLENVKETGEITESTEKAVMTSLNAYFKPEILNRMDDIVLFKPLSIDDMSMIVDKI----LTQLNIRLLEQRISIEVSDDAKAWLGQEAYEPQYGARPLKRFVQRQIETPLARMMIKEGFPEGTTIKVNLNSDNNLTFNVEKIHE........ 869
23 -37.200IDP01772 gene: clpB2; Clp ATPase [Yersinia pestis CO92] YPO3599 [Yersinia pestis CO92]  ali follow..  15  537..................................VDKSQIAAVIAEWTGVPLNRLSQSELAVVTELPSYLGQQIKGQETAIHCLHQHLLTARADL------RRPGRPMGAFLLVGPSGVGKTETVLQIADLLRQYLTTINMSEFQEKHTVGSPPGYVGYGEGGVLTEAIRQKPYSVVLLDEVEKA--------------HPDVLNLFYQAFDKGELADGEGR----------IIDCKNIVFFLTSNLG----------------------YQTIVDHADEPALLNERLYPELSAFFKPALLARME-VVPYLPLGMETLQIIIHGKLNRLDTLLRQ---RFSADVVIEPEVIDEILLRATRAENGARMLESIIDGALLPPVSLLLLQKVAAGTAISHIRIAVEGNVFTAQVEGA......... 866
24 -36.900IDP92125 heat shock protein, putative [Toxoplasma gondii ME49] TGME49_057990 [Toxoplasma gondii ME49]  ali follow..  16  517..................EQEEYERTHKPLLTEVVGPEQIADVVHRWTNIPVQKLTQTETERFLTLGKSLAEQVIGQPQAVEAVTQAILRSAAGL------SRRNRPIGSFLFLGPTGVGKTELCKRVAESLKERLVRFDMSEYMEQHSVGAPPGYVGHDEGGQLTEEIRRNPYSVVLFDEVEKA--------------HSQVWNVLLQVLDDGRLTDSQGR----------TVDFSNTIIILTSNLGA-------------------GFLIEAAQRVDPVAAATEMVMMEVRKFFRPELLNRLDDIVIFKALTDVNLRQVMKLQ----MQEVRERLAEKRIELTMTNRAADHIVKEAFDPAYGARPLKRFIERHVVSDLSLKLLKGEIFADSHVVCDWDEKRRGWVWTTSALEVPPSAQRV 874
25 -36.900IDP00175 putative ATPase subunit of ATP-dependent protease YPO1471 [Yersinia pestis CO92]  ali follow..  16  545..................................VDVRTVAAVIADWTGVPLGSLLKDEQTNLLSLENRLGERVIGQDAALGALAQRLRAAKTGL------TSENGPLGVFLLVGPSGIGKTETALALADSLEKSLITINLSEYQEAHTVGSPPGYVGYGQGGVLTEAVRKRPYSVVLLDEVEKA--------------HRDVLNLFYQVFDRGFMRDGEGR----------EIDFRNTVIVMTANLGS-----------------DHLMQLLDEQPDAPDSTLHELLRPILRDHFQPALLARFQTLI-YRPLQVDALKRIVAIKLNQVAQRLH---CHYGLSCQIEDSLTDTLVAACLLPDTGARNIDSLLNQQILPVLSQQLLSRMSEQQRTTSLTLGWHEEDGITLTFEGE........ 880
26 -36.700IDP04443 gene: clpB; putative Clp ATPase [Yersinia pestis CO92] YPO0506 [Yersinia pestis CO92]  ali follow..  17  535..................................VDEQSIAAVLSDWTGIPSGKMLQDDIECVLNLEQRLGDHIFGQRNAIKEISQAIRIARAGI------QSQERPLGIFLLAGSTGTGKTETANVLVETLAHNLITFNMSEFQEAHTLGAPPGYVGYGKGGKLTEAVRRKPYSVILLDEFDKA--------------HADIQDAFYQVFDKGWMEDAEGR----------RVSFRQCFILLTCNQGA-----------------EEIEQAYLTANDIKPGALKPLVYDALLRRFAPALLARVN-IIPYIPLDQDALAQIASHHLARLQTRLWD---EIGATLVTEGDIPGWIASRVCSHPNHGRAVEELLRQTLLPAVGNEVLKRRHEAEPLREIRLIVEETELSI.............. 864
27 -36.300IDP90100 ZZZ_0016 [Escherichia coli 042]  ali follow..  17  511..................................VDKNCVADVVSGWTGVPLGVCLDGEQQKASGLLRCLEQRVLGQRYAMSAIASQVLICRADL------KDPVKPDGVFLLAGPSGTGKTETARALAEFVENKLITINMTEFQEAHTVGAPPGYVGFGQGGTLTERVSHNPYSVILLDEIEKA--------------HPDVLEFFFQIFDSGIIEDAEGK----------MVSFRDCLIIMTSNF------------------ASENITNIWNDGETNRDRIKEMLLPLFNEHFGAAFMGRTN-LIPFTPLHSKTLRDIVLIKIDKICQRFEQASG-QMYKIEYNDSLIDWITHHCQCDKSGARDIDSVLNSTVLPVLARYLTDSEDNRT.............................. 825
28 -35.900IDP01480 clpB protein VCA0116 [Vibrio cholerae O1 biovar El Tor str. N16961]  ali follow..  17  542..................................VDADQIAEVIADWTGVPVDQMNTDELHKITHLTSILGQAIKGQETAIERIHRHLLTARADL------RRPGRPKGAFLLVGPSGVGKTETVVQLAEQLKQFLTTINMSEYQEKHTVGSPPGYVGYGEGGVLTEAIRKMPYSVVLLDEVEKA--------------HPEVLNIFYQGFDKGEIADGEGR----------VIDCQNIVFFLTSNLG----------------------YQTIVDYADEPAKLDEALYPELAAFFKPALLARME-VIPYLPLGKEVLAQIVRGKLARLEKLFKT---RYNAEVVIEESLIDEILSRATRSENGARMLEAIIEGQLLPPVSLALLNKLAERAPVERIRLAAEAGEFIG.............. 866
29 -32.300IDP92128 clpB protein, putative [Toxoplasma gondii ME49] TGME49_082200 [Toxoplasma gondii ME49]  ali follow..  16  548..................................LTADDVAQVISLWTGIPLAKLTDDEKSKILRLSDLLHSRVIGQDDAVKAVADAMVRARAGL------SREGMPVGSFLFLGPTGVGKTELAKALAMEMEKNLIRIDMSEFSEAHSVGSPPGYVGHDAGGQLTEAVRRRPHSVVLFDEIEKG--------------HQQILNIMLQMLDEGRLTDGKGL----------LVDFTNCVIILTSNVGAAASEGDDSSSEKKDKKGAVLDKNKKSGNWKKEARRKILSEIAGSGLLKPEVVNRFSGVIIFEPMNPADVRKIL----AIQSKDLKNALQRKGIELVIDASAEEFIVQRSYTHKFGARPLKRFVDNHIGAKMAPWILSGYLQPGMRVTVVASKRNKNTLEAHVCKVVMGKCDRA 947
30 -23.400IDP04216 gene: ruvB; Holliday junction DNA helicase B [Salmonella typhimurium LT2] STM1894_1_336 [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2]  ali follow..  18  9..............................................SAGATIAEDVADRAIRPKLLAE-----YVGQPQVRSQMEIFI----------QAAKRRGDALDHLLIFGPPGLGKTTLANIVANEMGVNLRTTSGPVLEKAGDLAAMLTNL--------------EPHDVLFIDEIHRLSPV--------------VEEVLYPAMEDYQLDI-----GEGPAARSIKIDLPPFTLIGATT----------------------------------------------AGSLTSPLRDRFGIVQRLEFYQVPDLQHIVGRSARHM-------------GLEMSDDGALEVARRA---RGTPRIANRLLRRVR.............................................. 231
31 -22.800IDP05235 gene: ruvB; Holliday junction DNA helicase B [Listeria monocytogenes EGD-e] lmo1532 [Listeria monocytogenes EGD-e]  ali follow..  21  1.......................................MDERIISSETVDAEEVSFETSLRPQNLSQ-----YIGQDKVKNNLTVFIEAATLR----------NEALDHVLLYGPPGLGKTTLAMVIASEMGSQIKTTSGPAIERPGDLATILTSL--------------EPGDVLFIDEIHRLSRA--------------IEEILYPAMEDYCLDIVIG---TGPTARSVRLDLPPFTLIGATTRAGL---------------------------------------------LSAPLRDRFGVIDHLEFYTEEQLTEIVLRTSNIL-------------DTKIDDLGAREIARRS---RGTPRIANRLLKRVR.............................................. 230
32 -22.500IDP06190 gene: ruvB; Holliday junction DNA helicase RuvB [Helicobacter pylori J99] NP_223085 [Helicobacter pylori J99]  ali follow..  22  18.........................................................EVSLRPNLWED-----FIGQEKIKSNLQISICAAKKR----------QESLDHMLFFGPPGLGKTSISHIIAKEMETNIKITAAPMIEKSGDLAAILTNL--------------QAKDILFIDEIHRLSPA--------------IEEVLYPAMEDFRLDIIIG---SGPAAQTIKIDLPPFTLIGATTRAGM---------------------------------------------LSNPLRDRFGMSFRMQFYSPSELSLIIKKAAAKL-------------NQDIKEESADEIAKRS---RGTPRIALRLLKRVRD............................................. 230
33 -22.000IDP00067 gene: ruvB; holliday junction DNA helicase [Campylobacter jejuni subsp. jejuni NCTC 11168] NT01CJ1369 [Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819]  ali follow..  22  17.........................................................ETSLRPSNFDG-----YIGQESIKKNLNVFI----------AAAKKRNECLDHILFSGPAGLGKTTLANIISYEMSANIKTTAAPMIEKSGDLAAILTNL--------------SEGDILFIDEIHRLSPA--------------IEEVLYPAMEDYRLDIIIG---SGPAAQTIKIDLPKFTLIGATTRAGM---------------------------------------------LSNPLRDRFGMQFRLEFYKDSELALILQK-------------AALKLNKTCEEKAALEIAKRS---RSTPRIALRLLKRVRD............................................. 229
34 -18.400IDP95260 DNA-binding ATP-dependent protease La [Acinetobacter baumannii ATCC 17978] YP_001084064 [Acinetobacter baumannii ATCC 17978]  ali follow..  22  24.....................................................NKASKVSINLNKAQEILDADHYGLDDVKDRIVLAVQSRVKKLKGP------------LCLVGPPGVGKTSLGESVAKATGREFVRMALGGVRDEAYIGAMPGKIVQSLTKVGVKN-------LFLLDEIDKMAQDYRG----------DPASALLEVLD------PSQNSKFNDHYLDLDLDLSEVMFICTANSMNIPEALLDRME-----------------------------------------------VIRLPGYTEDEKVNIA---ERYLVPKAIKNNGLRPKELTIHEEAIRDIVQR-YTREAGVRNLEREVSKIARKVVKEAVSKKSKNLQLDVTSANLPE.................... 298
35 -14.600IDP02742 hypothetical protein GBAA2122 [Bacillus anthracis str. `Ames Ancestor`] GBAA2122 [Bacillus anthracis str. `Ames Ancestor`]  ali follow..  15  12...............................................................EKIINNIEKLMVGKRKETILALTAL-----------------LAEGHVLLEDVPGVGKTMLVRALSKSIDADYKRIQFTDLLPSDVTGVSIYNPKELQFEFKPGPI----GNFILADEINRTSPK--------------TQSALLESMEEGNITI--DGMTRPLPKPFFVMATQNPV--YEGTYPLPEAQLDRFLLKLKMGYPTPEEE------------LLYLQQSVREVSMDKGIKHYIVKLVSQTRSYSSIQLGASPRGSIALMKASQAYAFIHGRNYVIPDDVKFLVLAHRLILKMEAKFEGITGEQVISKIVARTTVPTQRKMNL............................. 296
36 -14.500IDP01644 gene: lon; DNA-binding, ATP-dependent protease La [Francisella tularensis subsp. tularensis SCHU S4] FTT0626 [Francisella tularensis subsp. tularensis SCHU S4]  ali follow..  19  306.....................................................GKRAKVKRDINLAEKVLEKDHYGIKKVKERILEHL--------AVQIKRDSNTKAPILCLVGPPGVGKTSIGQSIARATGREYVRMALGGVRDESYIGSMPGQIIQKIIKSKTEN-------LFLLDEIDKISSDFRG----------DPSAALLEVLD------PEQNSTFNDHYLEIDYDLSKVMFVATANSLDIDPALRDRLE-----------------------------------------------IINLSGYTEIEKQAIA---KQYLIPKALENNGLTKDEINFTPKAILDIIRY-YTREAGVRNLQQKIDGVCRKAVKNLLKDSNTGKISITQKNLED..................... 580
37 -14.000IDP02793 gene: loN; ATP-dependent protease La 1 [Bacillus anthracis str. `Ames Ancestor`] GBAA4702 [Bacillus anthracis str. `Ames Ancestor`]  ali follow..  18  301.....................................................TDATEDMIDLAHSEEILNKDHYGLEKVKERVLLAVQKLTNSLKGP------------LCLVGPPGVGKTSLARSIATSLNRNFVRVSLGGVRDESYVGAMPGRIIQGMKKAKSVN-------VFLLDEIDKMSNDFRG----------DPSAALLEVLD------PEQNHNFSDHYIEEPYDLSKVMFVATANTLS---------------------------------------------SIPGPLLDRME-IISIAGYTELEKVHIA---REHLLPKQLQEHGLRKGNLQVRDEALLEIIRY-YTREAGVRTLERQIAKVCRKVAKIIVTAER--KRIVVTEKNVVD.................... 574
38 -13.600IDP90346 gene: lon; ATP-dependent protease La [Chlamydia trachomatis D/UW-3/CX] CT344 [Chlamydia trachomatis D/UW-3/CX]  ali follow..  20  340.....................................................GIQTKEYHDLKKAESILNKDHYGLEDIKQRILISVGKLANGMKGS------------ICLVGPPGVGKTSIGRSIAKVLHRKFFRFSVGGMRDEAYIGAMPGKLVQALKQSQIMN-------VIMIDEVDKIGSSYHG----------DPASALLEVLD------PEQNKDFLDHYLDVRVDLSNVLFILTANVLD---------------------------------------------SIPDPLLDRME-VLRLSGYILEEKLQIA---TKYLVPRARKEMGLSAQNVTFQPEALKHMINN-YAREAGVRTLNENIKKVLRKVALKIVQNQEKNLSKKSRFTITPKNLQDYL.............. 621
39 -12.700IDP92574 cell division cycle 48 protein [Toxoplasma gondii] ACU32853 [Toxoplasma gondii]  ali follow..  16  198................................................................RLDEVGYDDIGGCRKQMAQIREMIELPLRHPTLFKTLG---KPPRGVLLYGPPGSGKTLIAKAVANETGAFFFLINGPEVMSK-MAGEAESNL-----RRAFEEAEKNAPAIIFIDEIDSIAPKREKTNGE---VERRVVSQLLTLMDG------------KGRGQVVVIGATNILRIHTRNMKLANDVKLEELAANTHGFVGADLAQLCTEAALSCIREKMDLIDLEDDTIDAQVLNSM-------AVTQEHFTSALQCCNPSSLREWDDIGGLEDVKRNLQEMILYPIDHPEKYEKFGMSPSRGVL.................................................. 516
40 -12.400IDP04393 gene: lonB; ATP-dependent protease LonB [Clostridium perfringens ATCC 13124] CPF_1645 [Clostridium perfringens ATCC 13124]  ali follow..  15  45...............................................EKLNKLRMIKLTEPLTEKSRPSNLEEIIGQEKGIKALKAALCGPNPQH---------------VIIYGPPGVGKTAAARIILEEAK-DSKFVEIDATTLRFLIGSVHDPIYQGAGSLGIAGVTKAHGGILFIDEIGEL--------------HPIELNKLLKVLEDRKVFLDSAYYSSEDPNTDNGLPADFRLIGATTRSPE---------------------------------------------EIVPAIRSRC-VEIFFRGLTVEEIRKIALN-------------ATNKVGYRISDEGLDIVSRY-CTNGREVINLVQLCSGLAINENRDYIKESD.................................. 328
41 -12.300IDP02738 gene: hflB; ATP-dependent metalloprotease [Francisella tularensis subsp. tularensis SCHU S4] FTT1310c [Francisella tularensis subsp. tularensis SCHU S4]  ali follow..  19  154.........................................................................VAGVDEAKEEVAEIV--DFLREPKKYEKIGGKIPKG-VLMVGPPGTGKTLLARAIAGEAKVPFFSISGSDFVEM-FVG-----VGASRVRDMFEQAKKKAPCLVFIDEIDAVGRHRGSGMGGGNDEREQTLNQMLVEMDG--------------------FADNEGVIVIAAT----------------------------------------NRPDVLDRALLRP--GRFDRQVTVGLPTVKGREAILKVHMKKVIARGTPGFSGAELANLVNEAAL--FAARESKDKVSMADFEKAKDKILMGSERRSMAMTEKEKRLTAYHEA....................... 416
42 -12.300IDP02184 gene: ftsH; ATP-dependent metalloprotease FtsH [Coxiella burnetii RSA 493] CBU_1352 [Coxiella burnetii RSA 493]  ali follow..  20  158.........................................................................VAGVDEAKEEVKELV--EFLRDPGKFQRLGGKMPCG-VLLVGPPGTGKTLLAKAVAGEAKVPFFTISGSDFVEM-FVG-----VGASRVRDMFDQAKKQAPCIIFIDEIDAVGRHRGAGLGGGHDEREQTLNQLLVEMDG--------------------FEGKEGIIVMAAT----------------------------------------NRPDVLDPALLRP--GRFDRQVVVPLPDIKGREYILKVHMNKLIARGTPGFSGADLANIVNEAAL--FAARENKKDVSMSEFERAKDKIMMGAERRSMVMSDDEKKLTAYHEA....................... 420
43 -12.200IDP02605 gene: hflB; ATP-dependent metalloprotease [Yersinia pestis CO92] YPO3502 [Yersinia pestis CO92]  ali follow..  20  154.........................................................................VAGCDEAKEEVSELV--DYLREPSRFQKLGGKIPKG-VLMVGPPGTGKTLLAKAIAGEAKVPFFTISGSDFVEM-FVG-----VGASRVRDMFEQAKKAAPCIIFIDEIDAVGRQRGAGLGGGHDEREQTLNQMLVEMDG--------------------FEGNEGIIVIAAT----------------------------------------NRPDVLDPALLRP--GRFDRQVVVGLPDVRGREQILKVHMRRVIARGTPGFSGADLANLVNEAAL--FAARGNKRVVSMVEFEKAKDKIMMGAERRSMVMTEAQKESTAYHEA....................... 416
44 -12.000IDP90891 gene: dnaX; DNA polymerase III subunits gamma and tau [Yersinia pestis CO92] YPO3122 [Yersinia pestis CO92]  ali follow..  19  11.............................................................RPQTFAD-----VVGQEHVLTALANGLSLG--RIHHA------------YLFSGTRGVGKTSIARLLAKGLN----FVDLIEIDAASRTKVE----TRELLDNVQYAPARGRFKVYLIDEVHMLSRHS--------------FNALLKTLEE-----------------------AHVKFLLATT---------------------------------------------------PQ---KLPVTI-LSRCLQFHLKAL---DVEQIRAQLEKVLLAEQIT--SDARALQLLARAA-----GSRDALSLTDQAVTVTVSQMLGTLDDEQPLAIIEALVSADGARVMAQIEQ......... 270
45 -11.800IDP02494 hypothetical protein GBAA0550 [Bacillus anthracis str. `Ames Ancestor`] GBAA0550 [Bacillus anthracis str. `Ames Ancestor`]  ali follow..  13  54..........................................................EEVDGRRKYNFFSNQLFGLEDALERLVEEYFH--------PSAKRLDVRKRILLLMGPVSGGKSTLVTMLKRGLETPLHLIDPKSQDIADLTGSEYGSESDPRAYRFDGELNKANRGMMEFQEMLKCD--------------EKFLWHLLSLTQEGNFKAG---RFALISADELIVAHTNETEYRSFIANKKNEALHSRIIVMPVPYNLRVSEEEH-------YEKMIRESDVSDVHIAPHTLRVAAMFTILTRLKDPKRPDIYNAIDVEELQREYQDEGMKGIDPRYVINRISSTIIRKEVPSINALDVLRSLKDGLDQ............................................ 445
46 -11.700IDP91903 hypothetical protein SpneCM_05798 [Streptococcus pneumoniae str. Canada MDR_19A] SpneCM_010100005798 [Streptococcus pneumoniae str. Canada MDR_19A]  ali follow..  23  189.........................................................................VAGAEEEKQELVEVV--EFLKDPKRFTKLGARIPAG-VLLEGPPGTGKTLLAKAVAGEAGVPFFSISGSDFVEM-FVG-----VGASRVRSLFEDAKKAAPAIIFIDEIDAVGRQRGVGLGGGNDEREQTLNQLLIEMDG--------------------FEGNEGIIVIAAT----------------------------------------NRSDVLDPALLRP--GRFDRKVLVGRPDVKGREAILKVHAKNKVAQQTPGFVGADLENVLNEAAL--VAARRNKSIIDASDIDEAEDRVIAGPSKKDKTVSQKERELVAYHEA....................... 451
47 -11.700IDP90616 DNA polymerase III subunits gamma and tau [Vibrio cholerae O1 biovar eltor str. N16961] VC1054 [Vibrio cholerae O1 biovar El Tor str. N16961]  ali follow..  21  11.............................................................RPTRFSE-----VVGQSHVLTALENALAQN--RLHHA------------YLFSGTRGVGKTTIGRLFAKGLN----FVDLLEIDAASRTKVE----TRELLDNVQYKPARGRFKVYLIDEVHMLSRHS--------------FNALLKTLEE-----------------------EYVKFLLATT---------------------------------------------------PQ---KLPVTI----LSRCLQFHLKPISVENIQQQLDKVLHAEQIS--SDSKALNLLAHAA-----GSRDALSLTDQAI.............................................. 225
48 -11.700IDP91261 DNA polymerase III, delta prime subunit [Bacillus anthracis str. Sterne] NT05BA0041 [Bacillus anthracis str. Sterne]  ali follow..  17  1.................................................................MTKTWEQLSAIQPIGVKMLMNSIAKERIS--------------HAYLLEGEKGTGKFATAIQMAKSFLTNCKRIDSGNHPNLHIVKPDGLSIKKQQIHDLQEEFSKTGKKVYIIEHADRMTANA--------------ANALLKFLEE---------------------PSSDTTAILLTE----------------------------------------------SHQILNTILSRC-QVVTFRPLPTESLIRRLQDE................................................................................................. 182
49 -11.600IDP01132 gene: loN2; ATP-dependent protease LA BA_4703 [Bacillus anthracis str. Ames]  ali follow..  12  32..............................................TQKVSIDRESKKELEQLRKMREISLTEPLAEKVRPTSFLDIV--GQEDGIKSLKAALCGPNPQHVIIYGPPGVGKTAAARLVLEEARTNATFIELDATTARFLIGSVHDPIYQGAGAMGQAGVTDAHGGILFIDEIGEL--------------HPIQMNKMLKVLEDRKVFLESAYYSEENT--QKGLPADFRLVGATTRSPE---------------------------------------------EIPPAIRSRC-LEVFFRELDTEEIQKVAKN-------------AADKVEMQIGENGIEMIGM--YARNGREAINLVQISAGMAINEERSFIKDEDIEWVV............................ 334
50 -11.200IDP91185 AAC46367 [Vibrio cholerae]  ali follow..  19  127......................................................................GDAVVADTKSLKLLALA--------------DKVAKTDANVMILGPSGSGKEVMSRYISPRKEGPFIAINCANMLEATLFGYEKGAF-TGAVQACPGKFEQAQGGTILLDEISEMD--------------LNLQAKLLRVLQEREV-------KRLGSRKSIKLDVR----VLATSNRDLKQYVQAGH-------------------------------------FREDLYYRLNVFLTWPALCEDNIEPLANHLIERHCKKLGLPVP------SIAPNAITKLLNYPWP---NVRELDNVVQRAL.............................................. 357
51 -10.700IDP02403 sigma-54 dependent DNA-binding response regulator [Campylobacter jejuni subsp. jejuni NCTC 11168] Cj1024c [Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819]  ali follow..  14  115....................................................IREKTADKKSKKNEKKEENKDFFSTSPNLEKTLNLS-------------QKAAKTDASVMFFGESGVGKEVFSRYISKRSNKPFIAINMANLIESELFGFEKGAF-TDANATKIGLFEMANEGTLFLDEIGEMP--------------YEIQAKLLRALQEKEI-------TRLGSTKSIKIDVR----IISATNANLDEKIKNGE-------------------------------------FRSDLYYRLNTVINIPPLREEEILGIAQKVLEDTCKEYDFKEK------QLSQEAKNALLEYDFP---NIRELISVVQRAC.............................................. 364
52 -10.400IDP90644 gene: holB; DNA polymerase III subunit delta` [Salmonella typhimurium LT2] STM1201 [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2]  ali follow..  11  2.......................................................................KWYPWLRPAYEKLVESYQAGRGH--------------HALLIQALPGMGDEALCYALSRYLHKSCGHCRGCQLMQAGT--KGKSSLGVDAVREVSEKLYEHSAKVVWIADAALLTDAA--------------ANALLKTLEE---------------------PEQTWFFLASPEPARLLATLRSRCRLHHLAPPSESYAMSWLSREVTASQEALLTALRLNAG-LMDSLHTGDWYAVLTALNHEQAPARLHWLATLLVDALKRQHGASYLTNVDADAVVAALAGP-----LSPARIQAILND-VCHCRDQLLHVTGLNRELVLTDLILR..................... 318
53 -10.100IDP90607 DNA polymerase III subunit delta` [Vibrio cholerae O1 biovar eltor str. N16961] VC2015 [Vibrio cholerae O1 biovar El Tor str. N16961]  ali follow..  11  4.....................................................................LNSLYPWLVPVWQPWQAGLAAGKIS--------------SATLIQASEGVGVESLVELMARTLSEPCGFCHSCGLMQSGN--KIGKSITVEQIRQMNRIAQESSQ-LIVIEPADAMNESSA--------------NALLKTLEE---------------------APNCLFILVTSRIKHLLPTIVSRCQRLVLP-QGITTPAYALHLCADSPLKTRAFMLEGGAEKYHELESQLMNALSGDVNAQLKCIALIDADLTTHLYWVWCVLTDAQKIHFGVQQDYYPPASAALAGRFTYSKLHVQTAS-LERLMEQLNQFSGLNTELLLLQWLYQ..................... 316
54 -9.860IDP90924 gene: holB; DNA polymerase III subunit delta` [Yersinia pestis CO92] YPO1606 [Yersinia pestis CO92]  ali follow..  12  7............................................................................LNAPYRQLVGQHSTGRGH--------------HALLLHSLPGNGEDALIYALSRWL----NHPDWYVLTPEKGKSSIGVELVRQLIDKLYSHAQQGGAKVVWLPHAEVLTDAA--------------ANALLKTLEE---------------------PEKTYFLLDCHQPASLLATLRSRCFYQWLNLQWRKRQIPVEPVAMLAALKLSEGAPLAAERLLQPALNRSDLLSLLPQLNHDDAAERLQWLSSLLLDALK--WQQGAGEFAVNQDQLPLVQQLA--HIAATPVLLQLAKQ-LAHCRHQLLSVVGVNRELLLTEQLLS..................... 324
55 -9.840IDP92077 ruvB-like 1, putative [Toxoplasma gondii ME49] TGME49_097370 [Toxoplasma gondii ME49]  ali follow..  14  39.........................................................................MVGQEKAREAAGYVV----------ELIRCKRMAGKALLLAGPPGTGKTAIAMAIAQELKVPFCPMVASEVYMKEVYEGQVMEMIDEPSESVLNDEKKEVIQDVTLHDLDAANARPQGGNDFTEKLRMEINKVVNRYIDQGIAELVPG---------VLFIDEVHML---IECFTYLNRALESSLTPIVVFATNRGICTIRGTEILS------------AHGIPVDLLDRM-LIARTLPYNLEEIKHVIR-------------IRAKIENLDMEEEAITLLGEIGER------SLRYAVH--LLTPASILAETEADEEAPAITRDHILRVDSLFQDARSSARRLAQEAD 459
56 -9.700IDP01807 gene: radA; DNA repair protein RadA [Francisella tularensis subsp. tularensis SCHU S4] FTT0873c [Francisella tularensis subsp. tularensis SCHU S4]  ali follow..  11  1MAK--QKTVFICQECGATSPRWQGQCHSCNQWNTFVEELKSDPKKVVKSRAGFAGSISKATSLSAIKGKHSRVSTHIGEFDRVLGGGI-----------------VKGSVILVGGDPGIGKSSILLQIMSFLSLQKKVLYVSGEESLEQIALRAERLNLAKIEQIASYMVEHKPEVVVIDSIQTMYNPEIQSMVGGVSQVRESSAYITQIAKQYEIAV--TKSGEVAGPRVLEHIVDAVIFI-NGRYRMMRALKNRFGAVNEIGVFAMTDKGMKEVKNPSAIFLNNGRTNLIGSVIVSVWEGTRPLLVELQSLRLAMILAIIQRYMHIDLYDKDVFLNVVGIDLALILIIYSSIKEIEIPHDMGEVGLSGEIRPIPYGIERINEAKKHGFKKIIVPQANVSK.................... 432

FFAS is supported by the NIH grant R01-GM087218-01
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Ma H, Xiong H, Liu T, Zhang L, Godzik A., Zhang Z. Aggregate formation and synaptic abnormality induced by DSCR1. J Neurochem. 2004 Mar;88(6):1485-96.