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Query: IDP92030 ruvB-like 1, putative [Toxoplasma gondii ME49] TGME49_019590 [Toxoplasma gondii ME49], from CSGID

Results of FFAS03 search in CSGID
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MEQPLVESAGSAAPAGVPASNATSPAEGRAHSAGIRVQAGSGGLSLQQQQRLAAHSHIKSLGLHADGTAMKTGGGMVGQEKAREAAGLVVDLIKAKKLAGQALLFAGPVGSGKTALAMAIAASLGPEVPFVPLSSSSVYSSEVKKTEVLLEACRKAIALRIREVKEVYEGEVVEVAAEETENPHGGFAKCLSAVIMTLKTVRGMKTLRLAPQIHDAIQKEKVKVGDVIYIEANTGAVKRVGRSDAHSTEFDLEVEEYVPVPKGEVHKRKEVVQVVTLHDLDVANAKPQGGTDIISVMGQFLKPRKTEITEKLRSEINKTVNKYIDQGIAELLPGVLFMDEVHMLDIECFTFLNRILESPLSPIIIFATNRGVCTVRGTDSIEPHGMPVDLLDRLLIVKTAPYTISEVVQVLKIRSQAENVRLSTEALELLGEVGSHTSLRYALQLLEPARILAEVEGHEIVERKHIEDVDALFLDCKSSAQRCAEMRDVLVSLast
1 -149.000IDP92030 ruvB-like 1, putative [Toxoplasma gondii ME49] TGME49_019590 [Toxoplasma gondii ME49]  ali  100  1MEQPLVESAGSAAPAGVPASNATSPAEGRAHSAGIRVQAGSGGLSLQQQQRLAAHSHIKSLGLHADGTAMKTGGGMVGQEKAREAAGLVVDLIKAKKLAGQALLFAGPVGSGKTALAMAIAASLGPEVPFVPLSSSSVYSSEVKKTEVLLEACRKAIALRIREVKEVYEGEVVEVAAEETENPHGGFAKCLSAVIMTLKTVRGMKTLRLAPQIHDAIQKEKVKVGDVIYIEANTGAVKRVGRSDAHSTEFDLEVEEYVPVPKGEVHKRKEVVQVVTLHDLDVANAKPQGGTDIISVMGQFLKPRKTEITEKLRSEINKTVNKYIDQGIAELLPGVLFMDEVHMLDIECFTFLNRILESPLSPIIIFATNRGVCTVRGTDSIEPHGMPVDLLDRLLIVKTAPYTISEVVQVLKIRSQAENVRLSTEALELLGEVGSHTSLRYALQLLEPARILAEVEGHEIVERKHIEDVDALFLDCKSSAQRCAEMRDVLVS 492
2 -124.000IDP92073 ruvB-like 2 protein, putative [Toxoplasma gondii ME49] TGME49_088860 [Toxoplasma gondii ME49]  ali follow..  42  3............................AAAPAVGGGIRVQEVSDVNRVERIAAHSHIRGLGLTDALQPRKFSQGMVGQPDARKAAGLVCKLVKAGRIAGRAVLLAGQPGSGKTAIAMAVAKELGESTPFTHISGSEIFSLEMSKTEALTQAFRRSINVLIKQEAEIIEGEVVEIEINRQTSAKAGQ-PSARTGRMMLKTTEMETLYDLGAKMIDALTKEGVTAGDVITIDKSTGKVTRVGRGFSRAKDYDAVGPRFVQCPEGELQKRKEVVHSVTLHEIDVINSRAQG-------FLALFAGDTGEIKSEVREQIDQKVADWRAEGKAEVVPGVLFIDEVHMLDIECFSFLNRALEHETSPIVIMATNRGITTIRGTDYKSPHGIPLDLLDRSLIIPTQPYEEKDMLKIIELRAEEEDVELEESARLLLCKIAAECSLRYALHLITVANLVCRKRRGSVVTVQDIRRVYSLFIDVKRSTQYLVEYQQEFM. 459
3 -124.000IDP92077 ruvB-like 1, putative [Toxoplasma gondii ME49] TGME49_097370 [Toxoplasma gondii ME49]  ali follow..  60  1.....................................MRIEEVTSTKHAHRVASHSHIKGLGLNEDGSAKEIFMGMVGQEKAREAAGYVVELIRCKRMAGKALLLAGPPGTGKTAIAMAIAQELGPKVPFCPMVASEVYSTEVKKTEILMENFRRAIGIKIKEMKEVYEGQVMEMIDEPSESVLNDEKRVTSPIKITLKTQKGSKTLRLAPQINEGLKRQQIRVGDVIYIEASTGNVKRVGRSDDFAMEFDLDADEFVPIPRGDVHKKKEVIQDVTLHDLDAANARPQGGNDFASLLGQLAKPRKTEITEKLRMEINKVVNRYIDQGIAELVPGVLFIDEVHMLDIECFTYLNRALESSLTPIVVFATNRGICTIRGTEILSAHGIPVDLLDRMLIARTLPYNLEEIKHVIRIRAKIENLDMEEEAITLLGEIGERTSLRYAVHLLTPASILAETEADEEITRDHILRVDSLFQDARSSARRLAQEADFFVQ 463
4 -37.700IDP90891 gene: dnaX; DNA polymerase III subunits gamma and tau [Yersinia pestis CO92] YPO3122 [Yersinia pestis CO92]  ali follow..  18  1.......................................................................................................................................................................................................................MSYQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATPCGTCANCQEIEQGRFVDLIEIDAASRTKVEDTLLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPAHVKFLLAT-----------TDPQKLPVTILSRCLQFHLKALDVEQIRAQLEKVLLAEQITSDARALQLLAR-AADGSMRDALSLTDQAVSM----GQGQVTTVTVSQMLGT-LDDEQPLAIIEALVSA... 259
5 -36.400IDP90616 DNA polymerase III subunits gamma and tau [Vibrio cholerae O1 biovar eltor str. N16961] VC1054 [Vibrio cholerae O1 biovar El Tor str. N16961]  ali follow..  19  1.......................................................................................................................................................................................................................MSYLALARKWRPTRFSEVVGQSHVLTALENALAQNRLHHAYLFSGTRGVGKTTIGRLFAKGLNCETGITATPCGQCATCQEIDQGRFVDLLEIDAASRTKVERELLDNVQYKPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEYVKFLLAT-----------TDPQKLPVTILSRCLQFHLKPISVENIQQQLDKVLHAEQISSDSKALNLLAH-AADGSMRDALSLTDQAIAL----GNGVVKSDIVAHMLGT-LDTDHSLHLLQAISLQ... 259
6 -30.700IDP90924 gene: holB; DNA polymerase III subunit delta` [Yersinia pestis CO92] YPO1606 [Yersinia pestis CO92]  ali follow..  11  7...........................................................................................................................................................................................................................................LNAPYRQLVGQHSTGRGHHALLLHSLPGNGEDALIYALSRWLMCQQRQGEKSCGECHSCRLMLAGNHPDWYVLKGKSSIGVELVLIDKLYSHAQQGGAKVVWLPHAEVLTDAAANALLKTLEEPPEKTYFLLDC-----------HQPASLLATLRSRCFYWYLACPDTAICLQWLNLQWRKRQIPVEPVAMLAALKLS-EGAPLAAERLLQP............................................ 212
7 -28.100IDP91261 DNA polymerase III, delta prime subunit [Bacillus anthracis str. Sterne] NT05BA0041 [Bacillus anthracis str. Sterne]  ali follow..  12  2..................................................................................................................................................................................................................................TKTWEQLSAQPIGVKMLMNSIAKERISHAYLLEGEKGTGKFATAIQMAKSFLCSQRNRVEPCHVCTNCKRIDSGNHPNLHIVKDGLSIKKQQILQEEFSKTGLEANKKVYIIEHADRMTANAANALLKFLEEPSSDTTAILLT-----------EQSHQILNTILSRCQVVTFRPLPTESLIRRL----QDEGITVSLSTLAA----QLTNSFDEALTLCNDEWFAQARALVIKLCEALEKDKASIFFVQEKWGKHFGEKEQ.... 248
8 -26.700IDP90644 gene: holB; DNA polymerase III subunit delta` [Salmonella typhimurium LT2] STM1201 [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2]  ali follow..  15  1.....................................................................................................................................................................................................................................MKWYPWLRPAYEKLVESYQAGRGHHALLIQALPGMGDEALCYALSRYLLCQQPEGHKSCGHCRGCQLMQAGTHPDYYTLKGKSSLGVDAVVSEKLYEHSRLGGAKVVWIADAALLTDAAANALLKTLEEPPEQTWFFLAS-----------PEPARLLATLRSRCRLHHLAPPSESYAMSWL-----SREVTASQEALLTALRLN-AGSPGAALALLQS............................................ 207
9 -24.400IDP06086 gene: holB; DNA polymerase III subunit delta` [Helicobacter pylori J99] NP_223870 [Helicobacter pylori J99]  ali follow..  12  2..........................................................................................................................................................................................................................................................................KNSNRLIYTDNLE-ESLEEAASLFKHHIKFYTEIIEKDKKVIKTFNKDFKIEHAKEVISKAHLKHSELNAFLIAAPSYGVEAQNALLKILEEPPNNVCFIMFA-----------KSPNHVLATIKSRLIKEDLSKLDLKDIYAFLK-NLDKENFDSRENQRERIESLL-ESIHRHKIPLNEQELQAFD...................................... 188
10 -21.900IDP90607 DNA polymerase III subunit delta` [Vibrio cholerae O1 biovar eltor str. N16961] VC2015 [Vibrio cholerae O1 biovar El Tor str. N16961]  ali follow..  10  10..........................................................................................................................................................................................................................................WLVPVWQPWQAGLAAGKISSATLIQASEGVGVESLVELMARTLMCTS-SQSEPCGFCHSCGLMQSGNHPDFHVVKPEKIGKVEQIMNRIAQESSQLSGYRLIVIEPADAMNESSANALLKTLEEPAPNCLFILVT-----------SRIKHLLPTIVSRCQRLVLPAPTTALVVEWLKGQGITTPLHLCADSPLKTRAFMLEGGAEKYHELESQLMNALSGDVNAQLKCIALID........................ 239
11 -21.600IDP00067 gene: ruvB; holliday junction DNA helicase [Campylobacter jejuni subsp. jejuni NCTC 11168] NT01CJ1369 [Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819]  ali follow..  16  16..............................................................YETSLRPSNFDG-YIGQESIKKNLNVFIAAAKKRNECLDHILFSGPAGLGKTTLANIISYEMSANI------------------KTTAAPMIEKSGDLAAILTNLSEGDILFID----------------------------------------------------------------------------------------------------------------------------------EIH-RLSPAIEEVLYPAMEDYR------LDIIIGSGPAA--------QTIKIDLPKFTLIGAT-----------TRAGMLSNPLRDRFMQFRLEFYKDSELALILQKAALKLNKTCEEKAALEIAKRS-RSTPRIALRLLKRVRDFADVNDEEIITEKRANEALNSL-MDLRYLELLTAAKQK... 275
12 -21.100IDP04216 gene: ruvB; Holliday junction DNA helicase B [Salmonella typhimurium LT2] STM1894_1_336 [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2]  ali follow..  17  19..............................................................ADRAIRPKLLAE-YVGQPQVRSQMEIFIQAAKRRGDALDHLLIFGPPGLGKTTLANIVANEMGVNL-------RTTSGPVLEKAGDLAAMLTNL------------------------------------------------------------------EPHDVLFIDEI----------------------------------------------------------------------------HRLSPVVEEVLYPAMEDYQL-----DIMIGEGPAA---------RSIKIDLPPFTLIGAT-----------TRAGSLTSPLRDRFIVQRLEFYQVPDLQHIVGRSARHMGLEMSDDGALEVARRA-RGTPRIANRLLRRVRDFAEVKHDGAISAEIAAQALDML................... 254
13 -19.400IDP05235 gene: ruvB; Holliday junction DNA helicase B [Listeria monocytogenes EGD-e] lmo1532 [Listeria monocytogenes EGD-e]  ali follow..  19  18..............................................................FETSLRPQNLSQ-YIGQDKVKNNLTVFIEAATLRNEALDHVLLYGPPGLGKTTLAMVIASEMGSQIKTTSGPAIERPGDLATILTSLEPG-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------DVLFIDEIHRLSRAIEEILYPAMEDDLPPFTLIGAT-----------TRAGLLSAPLRDRFVIDHLEFYTEEQLTEIVLRTSNILDTKIDDLGAREIARRS-RGTPRIANRLLKRVRDFAQVRGNGTVTEKLAKEALTLL................... 253
14 -18.800IDP06190 gene: ruvB; Holliday junction DNA helicase RuvB [Helicobacter pylori J99] NP_223085 [Helicobacter pylori J99]  ali follow..  13  14.........................................................................................................................................................................................................................ETSQEVSLRPNLWEDFIGQEKIKSNLQISICAAKKRQESLFFGPPGLGKTSISHIIAKEMET------------------------NIKITAAPMIEKSGDLAAILTNLQAKD----ILFIDEIHRLSPAIEEVLYQTIKIDLPPFTLIGAT-----------TRAGMLSNPLRDRFMSFRMQFYSPSELSLIIKKAAAKLNQDIKEESADEIAKRS-RGTPRIALRLLKRVRDFALVKNSSLMDLSITLHALNEL................... 252
15 -12.100IDP00672 gene: hslU; ATP-dependent protease ATP-binding subunit SACOL1271 [Staphylococcus aureus subsp. aureus COL]  ali follow..  11  1.......................................MDTAGIRLTPKEIVSK-------LNE----------IVGQNDAKRKVAIALDEESKQEISPKNILMIGPTGVGKTEIARRMAKVV--GAPFIKVEATKFTEVGYVGRDVVRDLVDVSVRLVKAQKKSLVQDEATAKANEKLVKLLVPSMKKKASQTNNPLESLFGGAIPNFGQNNEDEEEPPTEEIKTKRSEIKRQLEEGKLEKEKVRIKVEQDPGALGMLGTNQNQQMQEMMNQLMPKKKVEREVAVETARKILADSYADELIDQESANQEALELAEQM--------------GIIFIDEIDKVATNNHNSGQDVSRQGVQRDILPILEGSVIQTKYGTVNTPSDLIPELQGRFIRVELDSLSVEDFVRILTLQTEEVTVNFTDEAITRLAEIAYQVNLHTILEMLEDLSFEAPSMPNAVITPQYVDDKLKSISTNKDLSAFI......... 466
16 -11.000IDP02494 hypothetical protein GBAA0550 [Bacillus anthracis str. `Ames Ancestor`] GBAA0550 [Bacillus anthracis str. `Ames Ancestor`]  ali follow..  12  1..........MDILKKIEQHREAEERLQWEGTFAEYLELVKERPWVAQTAHSRIYNMIKDAGIEEVDGRRKFSNQLFGLEDALERLEYFHPSAKRLDVRKRILLLMGPVSGGKSTLVTMLKRGLET---YSRTDRGAIFAIK-DPLHLIPHHLRDDF---FDEYGVRIEGNLSPLNVMRLEQEYGSRIEDVVVERIFFSEDRRTGIGTFSPSDPKSQDIADL-----------TGSLDF-----STIAEYGSESDPRAYRFDGELNKANR---------------------------------------------------------------GMMEFQEMLKCDEKFLWHLLSLTQESADELIVAHTNE-----TEYRSFIANKKNEALHSRIIVMPVP--EEEHIYEKMIRESDVSDVHIAPHTLRVAAMFTILTRLKPDIDLIKKMRLYYQDEGMKGIDPRYVINRISSTIIRKEVPSINALDVLRSLK 440
17 -10.000IDP02473 gene: hslU; ATP-dependent protease ATP-binding subunit [Bacillus anthracis str. `Ames Ancestor`] GBAA3967 [Bacillus anthracis str. `Ames Ancestor`]  ali follow..  14  1..............................................................MHLHFTPRQIVEKLIGQKDAKKAVAVALAENLRDEIAPKNILMIGPTGVGKTEVARRMAKLV--GAPFIKVEATKF-----TEVGYVGRDVESMVRDLVETSVRIVKEEMVVKVQDKAE-------EQANQRLVEILVPSPEKQSGFKNPLEMLFGGTQNSN-DSQEDVEIEKKRQDVERKLAAGLLEDEIVSIEVTEQQSSMFDMLQGTGMEQMGMNFQDALGSFMPKKTKKRKLSVKEARKVLTNEEAQRLIDMDEVTQEAVYRAE---GIIFIDEIDKIAGKQSNSVDVSREGVQRDILPIVEGSNVATKYGSVKTDPSDLIPELQGRFIRVELTKLSTDDFVKILILATEGIEIEFSDEAIRKIAEIAYQIGARRLHTIMEKLLE-EITLEKITITPQYVEEKLATIAKNKDVSQFI......... 462
18 -9.510IDP04393 gene: lonB; ATP-dependent protease LonB [Clostridium perfringens ATCC 13124] CPF_1645 [Clostridium perfringens ATCC 13124]  ali follow..  15  13....................................LMSILFYIYMSKSFASKKKDNS---VLEKKLRMIKLTEPLTEKSRPSNLEEIIGQEKGIKALKAALVIIYGPPGVGKTAAARIILEEAKKMA--ASPFNKDSKFVEIDATTLRFD---------ERGIADPLIGSV------------------------------------------DPIYQGAGSLGIAGVPQPKPGAVTKAHG-------------------------------------------------------------------------------------------GILFIDEIGELHPIELNKLLKVLEDPADFRLIGATTR-----------SPEEIVPAIRSRCVEIFFRGLTVEEIRKIALNATNKVGYRISDEGLDIVSRYCTNG--REVINLVQLCSGLAINENRDYIKESDIYWVIENGQYNPRMERMINDKPE.... 351
19 -9.250IDP01132 gene: loN2; ATP-dependent protease LA BA_4703 [Bacillus anthracis str. Ames]  ali follow..  16  33..............................QKVSIDRESKKELEQLRKMREISLTEPLA--------VRPTSFLDIVGQEDGIKSL-----KAALCGPNPQHVIIYGPPGVGKTAAARLVLEEAKRN--PKSPFRTNATFIELDATTARFD---------ERGIADPLIGSV------------------------------------------DPIYQGAGAMGQAGIPQPKKGAVTDAHG-------------------------------------------------------------------------------------------GILFIDEIGELHPIQMNKMLKVLEDRKVFLESAYYSEENTMIPGATTRSPEEIPPAIRSRCLEVFFRELDTEEIQKVAKNAADKVEMQIGENGIEMIGMYARNGREA--INLVQISAGMAINEERSFIKDEDIEWVVHS.................... 336
20 -9.150IDP02333 gene: clpX; ATP-dependent protease ATP-binding subunit [Francisella tularensis subsp. tularensis SCHU S4] FTT0625 [Francisella tularensis subsp. tularensis SCHU S4]  ali follow..  15  70...........................................................................IIGQDNAKKVLSVAVTKDDDTELKKSNVLLIGPTGSGKTLFAQTLAKLL--NVPFAIADATTLTEAGYVGDDV-ENIIVRLLQVAKAQKGIIYIDEIDKIARKSESTSITRDVSGEGVQQALLKLIEGTVSSVPPKGGRKHPNQDMIQVDTSDILFICGGAFAGIEKVIKHRMDKVSIGFNSDVIQQKNSLDSDKLMQKIESEDLTRFGLIPEGRLPIVTVLNELKEEDLVRILTEPKNALIKQYIKLFKFDNVNIEFT----QALVEIAKKAIT-LRTILENVLLEVMF............................................................................................................................... 377
21 -9.060IDP01995 gene: hslU; heat shock protein HslVU, ATPase subunit HslU [Coxiella burnetii RSA 493] CBU_2012 [Coxiella burnetii RSA 493]  ali follow..  12  1............................................................MTMTPREIVAELDKFIIGQNDAKRAVAIALGEELRREIFPKNILMIGPTGVGKTEIARRLSDLA--GAPFLKIEATKF-DVESIIRDLVDVAVKMTREKAIRQVKSLAEEAAEERVLDALIPPARGGFQGEPTAEEKPTEKKESATRQLFRKKLRNGELDDKEIEVEVSAHPSFEIMGPPGMEEMVSQLQGIMSSMSSRRSKSRRLKVKDALRILGEEEAAKLVDEDQIKSTALASVEQNGIVFIDEIDKIVKREGADVSREGVQRDLLPLVEGSTVFTKYGMVKTDHILFIASGAFHIA---------------------KPSDLVPELQGRFIRVELKALTADDFVRILTLKTENFGLSFTKDGIKRLAEIAYQIGARRLHTIMERLLE-DKQGESITIDADYVNKQLKKLAEDEDLSRYI......... 446

FFAS is supported by the NIH grant R01-GM087218-01
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Ma H, Xiong H, Liu T, Zhang L, Godzik A., Zhang Z. Aggregate formation and synaptic abnormality induced by DSCR1. J Neurochem. 2004 Mar;88(6):1485-96.