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Query: IDP92795 gene: csy2; Csy2 [Vibrio phage ICP1_2011_A] AGG09392 [Vibrio phage ICP1_2011_A], from CSGID

Results of FFAS03 search in CSGID
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MRKFIIVKNVKVDGINAKSSDITVGMPPATTFCGLGETMSIKTGIVVKAVSYGSVKFEVRGSRFNTSVTKFAWQDRGNGGKANNNSPIQPKPLADGVFTLCFEVEWEDCAEVLVDKVTNFINTARIAGGTIASFNKPFVKVAKDAEELASVKNAMMPCYVVVDCGVEVNIFEDAVNRKLQPMVNGYKKLEKIVDNKHMRDKFTPAYLATPTYTMIGYKMVSNVDNFDQALWQYGENTKVKTIGGIYNDLast
1 -120.000IDP92795 gene: csy2; Csy2 [Vibrio phage ICP1_2011_A] AGG09392 [Vibrio phage ICP1_2011_A]  ali  100  1MRKFIIVKNVKVDGINAKSSDITVGMPPATTFCGLGETMSIKTGIVVKAVSYGSVKFEVRGSRFNTSVTKFAWQDRGNGGKANNNSPIQPKPLADGVFTLCFEVEWEDCAEVLVDKVTNFINTARIAGGTIASFNKPFVKVAKDAEELASVKNAMMPCYVVVDCGVEVNIFEDAVNRKLQPMVNGYKKLEKIVDNKHMRDKFTPAYLATPTYTMIGYKMVSNVDNFDQALWQYGENTKVKTIGGIYND 248
2 -4.730IDP06298 methionine aminopeptidase [Streptococcus pneumoniae TIGR4] NP_345557 [Streptococcus pneumoniae TIGR4]  ali follow..  10  30....LIKPGVDMWEVEEYVRRRCKFLPLQIGVDGAMMDYPYATCCSLNDE--VAHAF--------------------------RHYILKDGDLLKVDMVLGGPIAKSDLNVSKLNVEQMKKYTQSYSGGTPSEEVKNLMDVTK--EAMYKGIEQAVVGNRIGDIGAAIQEYAESRGYGVVRDLVGHGV-EEPIAGRGLRLREGMVLTIEPMINTGDWEIDTDMKT-----WAHKTIDGGLSCQ..... 262
3 -4.670IDP93847 cobalamin biosynthesis protein CbiG [Yersinia enterocolitica subsp. enterocolitica 8081] YP_001006909 [Yersinia enterocolitica subsp. enterocolitica 8081]  ali follow..  69GAIGLTVRVIAPLVNDKMTDPAVV-VSLLSGHVGGANTLTRYLAGILGADPVITTATDVNEMAALDTLATQLDGEMQDFRHAVKNQMLVSNQKVGLRVVAGIGCRRATSLQTLVELLQQQMAENHFDIMALRAIGS--VTIKKDEPALHQLAKCWRVPFELFSVGELSRHEQRFPASDFVRQTVGVGSVSQPVAWLMSDGKLVGNTLRQQGVTIT................................. 346
4 -4.330IDP91313 putative LcrR [Vibrio parahaemolyticus RIMD 2210633] VP1661 [Vibrio parahaemolyticus RIMD 2210633]  ali follow..  5LVQSFEQTGIEVTPYFWQKSAIQLGYRMEVDGMELVFRVEEG----------------------------------------------------EIIIVLLKRVSPNLGLSNPFSCLFLLAEHAIPLFPSDWVIRGNVDVLRGSNMSSQRLAQFYLR---------ACGASHDQQADWYFLRLADYRPLKK......................................................... 134
5 -4.230IDP90355 gene: ybcL; hypothetical protein CT736 [Chlamydia trachomatis D/UW-3/CX] CT736 [Chlamydia trachomatis D/UW-3/CX]  ali follow..  12  14......IPKKYSCQGVGISPPLSFDVPREAKSLVLI-DVPPSVREDGLWIHWIVYNLSPVVSNLAEGAQIFAVQGLNTAGEIGYCPPCPPDAKHRYYFYAALDVVLSDEEGVTKEQLLEAMDGHIIATAELMG................................................................................................................... 145
6 -4.220IDP92767 gene: csy4; Csy4 [Vibrio phage ICP1_2011_A] AGG09394 [Vibrio phage ICP1_2011_A]  ali follow..  11  1MYNTISITVVTLHNKGIFNGEVGVTFPRMDKNVGDIITLFSK--IHIGKPKEADKVKTYRKVDTKSKGKLIRRCIKRKGVSAETAESLYGNYKGEKCKLPYIVVNSKSTGQRFSMFLEECENSEKFNSG....................................................................................................................... 162
7 -4.170IDP95464 gene: UL28; DNA packaging terminase subunit 2 [Human herpesvirus 1] NP_044630 [Human herpesvirus 1]  ali follow..  492.....AAADVRERRRLYADRLTKRSLASLGRCV---GELEKMLRVSVHGEVLPATFAAVANGFAARARFCALTAGAGTVIDNRSAPGVFDAHR--MRASLLRHQVDPALLPSITHRFF------ELVNGPLFDHSTHSFAQPPNTALYYSVENVGLLPHLKEELARFIMGAGGSGADWAVSEFQRFYCFDGISGITPTQRAAWRYI--ELIIATTLFASVYRCGELPGVYLTYDSDCPLVAIVESAPD 746
8 -4.130IDP05489 gene: cwlD; germination-specific N-acetylmuramoyl-L-alanine amidase [Clostridium difficile 630] CD0106 [Peptoclostridium difficile 630]  ali follow..  59.........IILDAGHGGIDPGALNKDKSTSEKDINLAITLKLRELIESSGGLV--LTREDDSSLYKEENNKTTRQKYNENLKNRKEIISNSNANMFVSIHLNAFEQSKYYGAQTFYPKDKQDSKELSKCIQE------ELKRVVDKTNNREVKPRDDIYLLKDNNI------------VLIECGF--LSNEKECKLLTDETYQEKIAWAIYGIQKYLS............................. 250
9 -4.070IDP92115 methionine aminopeptidase, putative [Toxoplasma gondii ME49] TGME49_048850 [Toxoplasma gondii ME49]  ali follow..  15  180....LVKPGVTTEEIDAKVHAFIVGYPSPLNYQQFPKSCCTSVN------EVICHGI--------------------------DFRPLQDGDIVNIDITVFFKGMHGDLNETY------------CVGDNVDEDSKRLIKGAY--ECLMEAVKQCRPGMMYRDVGRIVSDVADKYNLSVVRSYCGHGI-TTPNIPHYRRNKAIGVM-IEPMINAGKSGDLLWPDN-----WTACTIDGRRSAQ..... 381
10 -4.070IDP90538 gene: speD; S-adenosylmethionine decarboxylase [Yersinia pestis CO92] YPO3412 [Yersinia pestis CO92]  ali follow..  1......MSKLKLHGFNNLTKSLSFCQYNANRLTEILSETCSIIGANI--LNIARQDYDPQGASVSEEPVDPRDVDTSEHPGPLPSAVVAHLDKSHICVDIEVSTCGVISPLKALNYLIHQLESDIRVRGFTRDINGVKHFIDHKINSIQNFMSDDMKSLYHMMDVNVYQENIFHTKMMLKDFDLKYLFNAKPEELSAEEKEQITRLLYKEMQEIYYGRNVPEV......................... 264

FFAS is supported by the NIH grant R01-GM087218-01
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Bossy-Wetzel E, Barsoum MJ, Godzik A., Schwarzenbacher R, Lipton SA. Mitochondrial fission in apoptosis, neurodegeneration and aging. Curr Opin Cell Biol. 2003 Dec;15(6):706-16. Review.