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Query: IDP95268 hypothetical protein A1S_0043 [Acinetobacter baumannii ATCC 17978] YP_001083140 [Acinetobacter baumannii ATCC 17978], from CSGID

Results of FFAS03 search in CSGID
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MTEGRKVWEQYDANKKKVLPYHLDSRLGNAQRVSGTPHSWSDGQAAWDNGRMSDWVAYKKPQSMGYYKKQEVEYQFALANAFTICDAYHCAMHAGTNPNRKFIWTGTNGPTGAGVASVVNEFDGIGPSTEGYEWTTYPERLLQAGVKWKVYQNMPDNFTDNPLAGFKQYRRANEQSGQPVSNDTLTCPAYDEKIDATQPLYKGIANTMPDGGFLGTFKADIAQGKLPQVSWLVAPATYSEHPGPSSPVQGAWYIQEVLNALTENPQVWSQTVLLVNFDENDGFFDHVPSPSAPSKDINGVVYGKTTLTDQQVSYEYFNHPAVATSKSQPKPDGRVYGPGVRVPMYVISPWSRGGWVNSQVFDHTSILQFLEKRFGVQEPNISPYRRAVCGDLTTAFNFKTPNLLPVAELDGKKTKAEADAIRVAQALLPQVPVPSQQQFPQQEMGIRPSRALPYILHTSAKVDAAQKTVKLMFSNTGKQAAVFHVYNRLDLTVIPRRYMVEAGKQLDDVWNTTNGQYDLWVLGPNGFHRAFKGNLSQANQTQALPEIRVCVEECDANLYLKVRHDGNKSVKLNVKANAYLPNKTWMIETNSSEKELVWDMSEFGGWYDFTVTLADDATFSRRFAGRIETQEDSISDPYMGYLESLast
1 -188.000IDP95268 hypothetical protein A1S_0043 [Acinetobacter baumannii ATCC 17978] YP_001083140 [Acinetobacter baumannii ATCC 17978]  ali  100  1MTEGRKVWEQYDANKKKVLPYHLDSRLGNAQRVSGTPHSWSDGQAAWDNGRMSDWVAYKKPQSMGYYKKQEVEYQFALANAFTICDAYHCAMHAGTNPNRKFIWTGTNGPTGAGVASVVNEFDGIGPSTEGYEWTTYPERLLQAGVKWKVYQNMPDNFTDNPLAGFKQYRRANEQSGQPVSNDTLTCPAYDEKIDATQPLYKGIANTMPDGGFLGTFKADIAQGKLPQVSWLVAPATYSEHPGPSSPVQGAWYIQEVLNALTENPQVWSQTVLLVNFDENDGFFDHVPSPSAPSKDINGVVYGKTTLTDQQVSYEYFNHPAVATSKSQPKPDGRVYGPGVRVPMYVISPWSRGGWVNSQVFDHTSILQFLEKRFGVQEPNISPYRRAVCGDLTTAFNFKTPNLLPVAELDGKKTKAEADAIRVAQALLPQVPVPSQQQFPQQEMGIRPSRALPYILHTSAKVDAAQKTVKLMFSNTGKQAAVFHVYNRLDLTVIPRRYMVEAGKQLDDVWNTTNGQYDLWVLGPNGFHRAFKGNLSQANQTQALPEIRVCVEECDANLYLKVRHDGNKSVKLNVKANAYLPNKTWMIETNSSEKELVWDMSEFGGWYDFTVTLADDATFSRRFAGRIETQEDSISDPYMGYLES 644
2 -13.100IDP02230 putative sulfatase [Yersinia pestis CO92] YPO0829 [Yersinia pestis CO92]  ali follow..  50......................................................FPDEMRTQSLGFMGQDPSPFINQFASQSVVLKQAVSNYPLCT-PFRGMLMTGYRNGLQGNCHTGADGNFGGKDFGIELKKETWSDILKKQGYSWHLDAPEAPFVPSYNNPMEGRYWNDWTPPEKRHGFDFWYSYGTYDLHLNPMYWTNDTPRADIAIKYLRNEGGKYRDNDQPFALVV---SMNPPHSPYDQVPQKDEQFGRIVAELDRL-NLDKDTLVVFFSD-HGCCMG----------------------------------------SNGQPTKNVHYEESMRIPMMFRWPGKLPVREDELLFSAPDIYPTLLGLMGMSEHIPDQIEGTDFSNTVA.......................................................................................................................................................................................................................................................... 414
3 -9.010IDP02049 putative arylsulfatase [Salmonella typhimurium LT2] STM3122 [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2]  ali follow..  11  33.......................................................ADDMGYSDITPFGGEPTPNLQAMAENGVRMSQYYTS--PMSAPARAMLLTGNTSQQAGIGGMWWYENTIGKEGYELRRVTTMAERFKDAGYNWHLLPSSFYSSEAYASQINRWISETPREQPIFAWLAFTAPHDPLQAPDEWISRFKSQYEQGYADVYRQRIARLKKLGFLRDDIPLPGLELDKEWQAMTPEQQKDAQIGTVIETLKKTGRD-KNTILVFLSDNGVNPAEGFHYESEPDFWKQFDNRYENIGRKNSFISYGPHWADVSNAPYGRYHKTTSGQGGINTSFMISGP-IHHGAIDNATMAAYDVAPTLYEFAGIDASKSLSERPTLPMIGVSFKRYLTGESLH............................................................................................................................................................................................................................................... 457
4 -7.960IDP01384 protease, insulinase family/protease, insulinase family VC0554 [Vibrio cholerae O1 biovar El Tor str. N16961]  ali follow..  168FEIQRDTVKNERAQNYDNRPYGL-MWEKMGEALYPEGHPYSWQTI----GYVSDLDRVDVNDLKAFFLRWYGPNNAVLTQTLAWVQKYFGSIPKGPDVVDAPKQPARLSEDRVQQPMLLIGWPTQYWGAEDQVALDALASALGSGNNSLLYQELVKTQKAVDAGAFQDCAELACTFYVYAMAPSGAKGKLAPLYQETLQVLEKFKQQGVSASRLEQIIGSEEASSVKGKVSQLAANQTFFDQPDRIESQLEKIRAVTPESVKQVFTRYQPKVTLSVVAKGK-----TPERQLPEYQKIGDEQLAYREVKDSFDRSQMPQVAQAVQPRLPKLYDVYFDNGVQLPTVLIEIQLPAGERQVAM-GKEGLANLTASLL------QEGSQNRSAEAIQAQLDKLGSSIQVVAGAYSTSIVVSSLKKNLPETLQISQEMLLKPAFKQSDFARLQQQMLQ----------------GVVYQHQQPSWLASQATRQVLWGESLFARSGDGTQASISALTLKD-QFYRQHYTPHGAQIAVVGDISAREIEAAPLINPQVVPTLTKQKIYLVDKPGAPQSIIRMTGELYLTQLANFNLAGNFNSRINQNLREDKGYYGAPVRADVTVEAIQEMIKEMHH-QAGMSEEEMKFLRL 862
5 -7.780IDP05038 multicopper oxidase family protein [Bacillus anthracis str. Ames] BA_1902 [Bacillus anthracis str. Ames]  ali follow..  10  79..............................................................................................................................................................................................................................NGSSPG--------------PEIRVKKGEKVKVTLKNELSAPVSIWHGYPVPNDMD---G----IPGVTQDAVEPGKSFTYEFEANVLGTYWYHSHQDSVNQLDR-----------GLYGTFVVEDT--------NEKYDKDYTL-MLDEWITDKEEMNKQLKEMTKGKTEKADGNKSSKGNENTKKNDDKNSMDHSGMDMDSDKKDSGNMAGMDHGNMKMEGHDMSMYDLFTINGKSGDLNKGDKVRLRLVNAGYLSHNIHVHGHDPKVIKDKVISIAPGERYDVEFTANNGKWYVEDHSENKGAKGMKAIIEYDGSKEMKDIADEKEKKKDDLVKVKLVNHGHFFQVLSKGGKPVEGSPDTLNLKPGEEYEVAFVADNPGEWM-----------FHCHDLHHASAGMVTENKP....... 550
6 -7.060IDP04729 putative membrane protein [Yersinia pestis CO92] YPO0515 [Yersinia pestis CO92]  ali follow..  683.....................................................................................................................................................................................................................VNPQLQEASEAMINEEAWVLSDGKASVSQVSLLAAA-QKLSDEARKYYLME-NQWDAFFNDIRVRPINGLDDAALLARQLSDPS--------------------------------------------------SPLAN---LVRFSTREITLTTDNNGKGAMSSGWFNIQRNKLTTARRNIIDEMSGERSRFRLTPEKAVEDRFELLRRLGYALQSASTSNSDPLGRTFEQIYNQLITLSTSLRAGQILPQNNDFSRLQIDMARQPEPVRSIMMDLLAVGQTQSLQQSKANLSKGVSSISGRYPFNMFGRSGAMQSFFDQNKPDSNGVVTPKTLRSFENSAQIRDTFFDASGKMAMSMIIRPISLTPSILEAVLDVDGQVKVDWPGPKGGVYIRLTFKTQDGNVETVSFNGPYDVSNPRPLGVN...... 1108
7 -6.870IDP91668 Q914E0_9ENTO [Echovirus E7]  ali follow..  9.KTGAHETGLNASGNSIIHYTNINYYKD------AASNSANRQDFTQDPGKFTEPVKDIMIKTMPALNSPS-------AEESGYSDRVRSLTLGNSTITTQESANVVVGYGRWPEYLRDDEATAEDQPTQPDVATCRFYTLESV--QWEK--------------------------------------------------------------------SAGWWWKFPEALK--------DMGLFGQNMLYHYLGRAGYTIVQCNASKFHQGCLLVVC----------VPEAEMGCSQTDKEVAAMNLTKGEAAHKFEPTKTTGEHTVQSIVCNAGMGVGVGYPHQWINPYVNVPMDNMFRHYNFTLMVIPFAPLDYAAVPVTVTIAPMCAEYNGLRLAYQQGFPVLNTPGSNQFMTSDDFQSPSAMPQFDVTPHMDIPGEVHNLMEIAEVDSVVPVNNIKVNLQSMDAYHIEVNTGNHQGEKIFAFQ------QPGLESVFKRTLMGEILN---------------YYAHWSGSI---------------------KLTFTFCGSAMATGKLLLAYSPPGADVPATRKQAMLGTHMIWDIGLQSS-CVLCIPWISQTHYRL--AGNVT--QTGIVVPP...... 532
8 -6.730IDP05737 hypothetical protein CD1990 [Clostridium difficile 630] CD1990 [Peptoclostridium difficile 630]  ali follow..  11  16..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................SIPEGKIVK-LKCVDGIWAEVESNYDKGWLLYKYLERLSNAKNNSNDTIKNRKKNYIGNIRTNGLS-------LELRNDRTLESKVITTIPDGFKVEV---CYSVGKWARVNINKNEK-----RYSGYVYNQYIEEHLSL...... 139
9 -6.530IDP91543 cAMP-specific 3`,5`-cyclic phosphodiesterase, putative [Toxoplasma gondii ME49] TGME49_057080 [Toxoplasma gondii ME49]  ali follow..  22LLPGSAVDLERAGSDVTVAPGPAGSDSVTSPYADPFRDRFAVGRGSVLEHRSDSTADDTAMPEICVDKHRPSPKLTAASTLPRNAEDLHHGYHDVEA-------AGEPYGEMNNASEDRSSNSQFRLRCGRQAWETRPNSAALRALPWA-------------------------------SALVHAPPVEHAPIQPSPGGGVPDAGANRCLHIDDTGATDNDSIRPPSLATIASPSSSGSRSPHPDSIEGADFRLREVGSLESSPSC--DTFVSARSDETPRFLALVAVHGKPRPTNSNCRLPPAQASESCAGSGWREENRKSSAIRGSG----------RLSEVTANQRKTRSGQNSGQRNQGARKSLIEGGLPARVPNRVDESDLELAVASPVSSVFHQSDSRGKRCCSKENEDSRGPQTCFRCIGSSKKLHVRQHRNGESAGDAGHAENPQEAEWRDSRTVTTPSKDAQLSGVNALHTVPRMHRKKGAKELPEP-TCRDREAEKVAFCLSGADQGRQLGGPPGPIRRY--------------------------VSRFLEMWGGDDWGSTYYDSFSGSRGDIDAVAHCFEGS----VAADHQW---NAARRHTRSRSPAGCGRVVAAHEAGASPRRGVFEG 640
10 -6.470IDP05206 gene: cspBA; putative germination-specific protease [Clostridium difficile 630] CD2247 [Peptoclostridium difficile 630]  ali follow..  50................................................................................................................................................................................................................................TYPEIEFIEKPFILQTQDVQSFSSTG-------ITGFKNRTGLTGKGTIIGIIDS--GI-DYTLPVFRDSDGRDQSIQGNPPEGFREGTLYTNEDINNAIDGSMYIPISTTSLHGTHVAGICIASDARIIVVTDIFSRSTEFMRAIKFILDRALELRMP--NISYGSNEGSHRGTS----------------------------------------------------LFEQYIDDMCLFWKNNIVVAAGNNADKGGHKRRLQNNITEEVEFIVGEGERILNINIWPDFVDDFSVHLVNPSN---YPIAPYSLTRRVTLQLSSNTQITPGLWKIVFEPIDIVTGNVNIYLPTSEGGTASRVITVGSFNSRTDIVSIFSGEG--DLLIVSFLPGGTSGALTG------TSMATPHVTGVCS 472

FFAS is supported by the NIH grant R01-GM087218-01
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Sasin JM, Godzik A, Bujnicki JM. SURF'S UP! - protein classification by surface comparisons. J Biosci. 2007 Jan;32(1):97-100.