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Query: IDP00003 gene: gerXC; spore germination protein xc, (pxo1-112) GBAA_pXO1_0158 [Bacillus anthracis str. `Ames Ancestor`], from CSGID

Results of FFAS03 search in PDB0516
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MKINRKGGLFLLMFLFLLTGCWDRRELEHVLFINTLGIDFKDNHYIIYPQFINFTNMAKQEGPANRNYSPAYIGKGEGKLLYDAAFDFYKSSQQKVSWEHIKSIVVTERFLKNGNLNQLNDFLSRFFQFRNTMWVFGTKEPLENILATNNIFNISSLYTIMNLPQETIRQSASVDPLRLYTFRSNYYEPGMTTRIPFLATTTEHWKQGHKAFWMLEFNEYGCIAAKSYVNHLNDSDIAGVRWTNKNTNRAPLLLKVKNRAIGELILKKPKIDTKVSIEKGKPHIVMNISLEGDIYQLMKPMPVHKVKKTLRISLKKKLast
1 -62.0003n54_B mol:protein length:350 Spore germination protein B3  ali model follow..  17  1.........................DIEQLSFARGLAIDENDHQYKLTYQNLLPQSED----SQASGKPEFVNVTSHGKTILEAVSDVSIKD-PPVYSDHLKVILLGEKLMRNQNVDQVLNHFIRDDELRRSSYLMAARGNAADVFTKGNPNQQMPSEKLIDLTTHSGYNGKIMIPLRI-GRASVYSQNGYSYLIQAVKNEKGK----------AKYDGAGIIKSNKLVGFLSADETQTLSWVMGTIQGGVMPTTDKGHP-ITFEIKKSKTKIKPVIENGKPVFHISVKTKGILTESFSKSYLHRLENIFEKKLERD 287
2 -7.2105dhm_A mol:protein length:335 Immunoreactive 32 kDa antigen  ali model follow..  1MK-PMSDYDIPTTENLYFQGAMEPVEDRSIEISIRV-------DFTKTGETVRYERNQGSAAERLITNLYLLLFDQSGANPAKYYIAGNTFSGGIWLPDDMKVKL--DMTQSEAGERKVYVVANVDNAVKTALDAVANESDLQTVKRTTAMPWSTDIASMSGNKTHDFLANRLLDNVPLVRAIAKVE---------NISLSEKFQIVPIIVNGSLSEFKFRYVN............................................................................................. 210
3 -7.0305d0o_C mol:protein length:344 Outer membrane protein assembly factor BamC  ali model follow..  5VQKSRLAKVAGVSLVLLLAAC-EAAPLAELHAPAGMILPVTSGDYAIALDIRPPAQPLALVSGATGDTASLLVENGRGNTLWPQVVSVLQAKN----------YTITQRDDAGQTLT--------------TDWVQWNRLDEDEQYRGRYQISVKPQGYQQAVTVKLLNLEQAGKPVADAASMQRYSTEMMNVISAGLDKSATDAANAAQNRASTTMD-VQSAADDTGLPMLVVRGPFNVVWLPAALEKVGMKVTDSTRSQGNMAVTYKPLS-DPGLASGDYKLQVSLQFIDPKGHTLTQSQNDALVAVFQAAFSK. 344
4 -5.6304n6e_B mol:protein length:90 ThiS/MoaD family protein  ali model follow..  1..............................................MAVTVSIPTILRTHTGGEKS-------VEAKGATVLEIIDDVESRHAG-----------IKARLVKEEKLHRFINVYVNDEDVRFSGGLEAEVKDGDTL............................................................................................................................................................................ 81
5 -5.5804r2f_A mol:protein length:431 Extracellular solute-binding protein family 1  ali model follow..  11  1MSSG--VDLGTENLYFQSMACWDMPW-AYNDAAKKIAEGFSGANSKATYQIIQWNNFYQTSSAIASKTGPAVSTGGGFQAFQFEEQGQIAYADKVI-----------EKLKSNGQFDDFLPGVVEPFKTSKGYVAVPWQLDIRPLWYRKSLFEKAGVGV------------------SLLEAGKKLKGVGAVGF--ATGSGAGNNIGNHLMIMMMLNNGGGVFTKDGELDVLNDRNVEAVEFLLELVSNGVIDPA---------AVSYTTDNLNAQWKDSKAAYGML.............................. 270
6 -5.5602m19_A mol:protein length:106 Molybdopterin converting factor subunit 1  ali model follow..  3..................................GRDYKDDDDKGTMELELRFFATFREVVGQKS-----IYWRVDDDATVGDVLRSLEAEYDG-----------LAGRLIEDGEVKPHVNVLKNGREVVHLDGMATALDDGDAV............................................................................................................................................................................ 97
7 -5.5603utk_A mol:protein length:133 Lipoprotein outS  ali model follow..  1MHVSSLKVVLFGVCCLSLAAC-ANEQISQLASLVA.......................................................................................................................................................................................................................................................................................... 52
8 -5.4701dzj_A mol:protein length:157 ODORANT-BINDING PROTEIN  ali model follow..  12.................LSGKWITSYIGS-VFMRSIEFDDKESKVYLNFFSKENGICEEFSLIGTKQEGNTYDVNYAGNNKFVVSYA-----------SETALIISNINVDEEGDKTIMTGLLGKGTDIEDQDLVTRENGIPEENIVNIIERDDCPA................................................................................................................................................................ 157
9 -5.3803sul_A mol:protein length:122 Cerato-platanin-like protein  ali model follow..  12  63....................CYQITWSGTGKTIHVVGVDVAGNGFNVGQRAMDDLTNGQAVALGNIDVTATLVDKSA................................................................................................................................................................................................................................................ 119
10 -5.2603ejv_A mol:protein length:179 uncharacterized protein with cystatin-like fo  ali model follow..  13.................GMTMADETIILNVLGQYTRAHDRRD--PDAMAALFAPEATIEIVDAVGGASRSISRLEGR-DAIRVAVRQMMAPHGYRAWSQNVIIVIEGDHAVLDAQF......................................................................................................................................................................................................... 112

FFAS is supported by the NIH grant R01-GM087218-01
1 2 2 3 4 6   jobs submitted since Jan 1, 2011
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Pawlowski K, Pio F, Chu Z, Reed JC, Godzik A. PAAD - a new protein domain associated with apoptosis, cancer and autoimmune diseases. Trends Biochem Sci. 2001 Feb;26(2):85-7.