current user: public

Please be advised that we have recently moved our server to a new location. We tried our best to fully test all functions on the website, but if something does not work for you please let us know.

Query: gi|15644635|ref|NP_206803.1| transcription antitermination protein NusB (HP0001) [Helicobacter pylori 26695], from H.pylori

Results of FFAS03 search in H.sapiens
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
    .   10    .   20    .   30    .   40    .   50    .   60    .   70    .   80    .   90    .  100    .  110    .  120    .  130    .
# Score Template Links and tools%idFirst MATRTQARGAVVELLYAFESGNEEIKKIASSMLEEKKIKNNQLAFALSLFNGVLEKINEIDALIEPHLKDWDFKRLGSMEKAILRLGAYEIGFTPTQNPIIINECIELGKLYAEPNTPKFLNAILDSLSKKLTQKPLNLast
1 -19.300sp|P46087|NOP2_HUMAN Putative ribosomal RNA methyltransferase NOP2 OS=Homo sapiens GN=NOP2 PE=1 SV=2 (Range: 151-450)  ali follow..  1.........................EDEEEGEALLPIERAARKQKAREAAAGIQWSEEETEEEEEKEVTPESGPPKVEEADGGLQINVDEEPFV-LPPAGEMEQDAQAPDLQRVHKRIQDIVGILRDFGAQREE.... 109
2 -9.370sp|Q8TEA1|NSUN6_HUMAN Putative methyltransferase NSUN6 OS=Homo sapiens GN=NSUN6 PE=1 SV=1  ali follow..  10  6......................................KISLRPEVENYLKEGFMNKEIVTALGKQEAER-KFETLLKHLSHPPSFTTVRVNTHLSVQHVKNLLLDELQKQFNGLSVPILQHPDLQDVLL........ 97
3 -8.950sp|Q9NQC7|CYLD_HUMAN Ubiquitin carboxyl-terminal hydrolase CYLD OS=Homo sapiens GN=CYLD PE=1 SV=1 (Range: 601-900)  ali follow..  2............................................YLDSTLFCLFAFSSVLDTVLLRPKEKNDVEYYSETQELLRTEIVNPLRIYGYVCATKIMKLRKILEKVEEKDPEEFLNILFHHILRVEPLLKIR 103
4 -7.950sp|Q9ULK4|MED23_HUMAN Mediator of RNA polymerase II transcription subunit 23 OS=Homo sapiens GN=MED23 PE=1 SV=2 (Range: 901-1200)  ali follow..  11  123......KRKLVHAIIGSLKDNRPQGWCLSDTYLKCAMNAREDDTYYCRLIGRLVDTMAGKSP--PFPNCDWRFNEFPNPAAHALHVTCVELMALAVSGKEVGNALLNVVLKSQPENITAWMNAI.............. 249
5 -7.130sp|Q9UJX4|APC5_HUMAN Anaphase-promoting complex subunit 5 OS=Homo sapiens GN=ANAPC5 PE=1 SV=2 (Range: 301-600)  ali follow..  20  3.................................................................................AALNLAALHCRFGHYQQAEALQEAIRIAQESNDHVCLQHCLSWLYVLGQKRSDSY.. 58
6 -7.070sp|Q9ULK4|MED23_HUMAN Mediator of RNA polymerase II transcription subunit 23 OS=Homo sapiens GN=MED23 PE=1 SV=2 (Range: 1051-1350)  ali follow..  11  14.........................................DDTYYCRLIGRLVDTMAGKSP--PFPNCDWRFNEFPNPAAHALHVTCVELMALAVSGKEVGNALLNVVPLVPRENITAWMNGLI............. 102
7 -6.750sp|Q9HC77|CENPJ_HUMAN Centromere protein J OS=Homo sapiens GN=CENPJ PE=1 SV=2 (Range: 451-750)  ali follow..  16  98......................................................ESESSLDVSLQKKLETWEREK----EKENLELDEFLF----------LEQAAD---SFSSNSS--FVLKILERDQQICKGHRMS 164
8 -6.650sp|Q8NCM8|DYHC2_HUMAN Cytoplasmic dynein 2 heavy chain 1 OS=Homo sapiens GN=DYNC2H1 PE=1 SV=4 (Range: 4051-4307)  ali follow..  17  47.............................................LSKVIRGTTLLSSEVQKLASALLNQWPEDPLQYLRGLVARALAIQNWVDKAEKQALLSETLDLSELFHPD---TFLNALRQETARAVG..... 142
9 -6.570sp|Q9HCG8|CWC22_HUMAN Pre-mRNA-splicing factor CWC22 homolog OS=Homo sapiens GN=CWC22 PE=1 SV=3 (Range: 301-600)  ali follow..  15  172..........CAHKLLKMEFPESQTKELCNMILDCCAQQRTYEKFFGLLAGRFCMLKKEYMESFEDTIHRLETNKLRNVAKMFAHLLYTDSL------PWSVLECIKLSEETTTSSSRIFVKIFFQELCEYMGLPKLN 300
10 -6.550sp|Q9P2N5|RBM27_HUMAN RNA-binding protein 27 OS=Homo sapiens GN=RBM27 PE=1 SV=2 (Range: 1-300)  ali follow..  10  2....................................................LIEDVDALKSWLAK-----LLEPICDADPSALANYVVALVKKDKPEKELKAFCADQLDVFLQKETSGFVDKLFESLYTK....... 75

FFAS is supported by the NIH grant R01-GM087218-01
1 3 1 7 3 8   jobs submitted since Jan 1, 2011
Comments and questions to: webmaster

Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Grynberg M, Topczewski J, Godzik A., Paszewski A. The Aspergillus nidulans cysA gene encodes a novel type of serine O-acetyltransferase which is homologous to homoserine O-acetyltransferases. Microbiology. 2000 Oct;146 ( Pt 10):2695-703.