current user: public

Please be advised that we have recently moved our server to a new location. We tried our best to fully test all functions on the website, but if something does not work for you please let us know.

Query: sp|Q99490|AGAP2_HUMAN Arf-GAP with GTPase, ANK repeat and PH domain-containing protein 2 OS=Homo sapiens GN=AGAP2 PE=1 SV=2, from H.sapiens

Results of FFAS03 search in HGM_OVER
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
    .   10    .   20    .   30    .   40    .   50    .   60    .   70    .   80    .   90    .  100    .  110    .  120    .  130    .  140    .  150    .  160    .  170    .  180    .  190    .  200    .  210    .  220    .  230    .  240    .  250    .  260    .  270    .  280    .  290    .  300
# Score Template Links and tools%idFirst QTHLVLIREEAGAPDAKFSGWADAVIFVFSLEDENSFQAVSRLHGQLSSLRGEGRGGLALALVGTQDRISASSPRVVGDARARALCADMKRCSYYETCATYGLNVDRVFQEVAQKVVTLRKQQQLLAACKSLPSSPSHSAASTPVAGQASNGGHTSDYSSSLPSSPNVGHRELRAEAAAVAGLSTPGSLHRAAKRRTSLFANRRGSDSEKRSLDSRGETTGSGRAIPIKQSFLLKRSGNSLNKEWKKKYVTLSSNGFLLYHPSINDYIHSTHGKEMDLLRTTVKVPGKRPPRAISAFGPSLast
1 -4.030PB011130 gi|88806557|ref|ZP_01122074.1| hypothetical protein RB2501_00756 [Robiginitalea biformata HTCC2501]gi|88783389|gb|EAR14561.1| hypothetical protein RB2501_00756 [Robiginitalea biformata HTCC2501]  ali follow..  16  12..........................MLFHI-DENAYQKLLRYLEAVKRSFAGTAGSDEIIIAELFYEKMENERQVITQKEVDAVIAIMGQPEDYQVDEDIFEDVPP................................................................................................................................................................................................. 97
2 -3.810HGC00870 gi|163286116|dbj|BABD01024572.1|2.0 TMP01154;  ali follow..  11  19.........................ILLFHAPDKDTLLKIEMALFPLHRLRRVAKEDYVQPL-EETYEGDELSDTLFSDNRLNQALAALRKSGAGTFAILTPTNQNWNALQCFSEIRREHETIQKQLKGNKEQAEE.................................................................................................................................................................... 149
3 -3.690PB002776 gi|157737147|ref|YP_001489830.1| hypothetical protein Abu_0901 [Arcobacter butzleri RM4018]gi|157699001|gb|ABV67161.1| hypothetical protein Abu_0901 [Arcobacter butzleri RM4018]  ali follow..  188....SSVWG-------HYGQGHSGVCLIFETNNEVNYNGFDKVLNNQEEWRKLFWDKYEKNKLTKTKDWTYEKERIVLNRLMDYEIKEEDRKLKYDFNCLKGIKTPQNKKDEIIEIIINKCHENNILDFEFYQAFYCKES................................................................................................................................................................ 370
4 -3.430PB048276 _Gut.Meta.Jp.0112258_ gi|163310311|dbj|BABD01000385.1||2 (- 258:885~0 complete)  ali follow..  1..............ENTQIKLSETVMVI-AYLNFVINDLRKYFEPLLGRSLQTSDNDVQVLLVYDKQSGKLEHSDLKNELDGVAFKASLGEFSFMAAPSEGFVSRGDLYLDLLQIVLNAAEVKKL............................................................................................................................................................................... 133
5 -2.950HGC00787 gi|162657578|dbj|BAAX01002027.1|2.0 TMP01033;  ali follow..  11  122DRMVITVPDS---APLLELQQADVPVGVQLSFDETSYKMMFDALDRTMKAKNNRLAYLRDLFYSHR.......................................................................................................................................................................................................................................... 184
6 -2.750PB003142 Q8DVS6_STRMU/1-162 PB003142; Pfam-B_3142;  ali follow..  14  1..MMMSVTFPPGRPLSNFLL--EGTIMKLTVYFDGTF-----WFALVEHVNRKGQYKVFRYPFGKEPKDSIPQPKKMNPKRMQRVLNKSKKQSAVSTKAQAEMQKLHEALKKEKKSQSKEKRQALKQYKYQLKQEKRHQK................................................................................................................................................................ 159
7 -2.750PB007843 JCVI_PEP_1096682172521 /source_dna_id=JCVI_ORF_1096682172520 /offset=0 /translation_table=11 /length=152 /full_length=152  ali follow..  16  3.....KIISISGRP-FEVHTQTRTGVVATSLVDGKRIRNQVSLLSEINIYGLEKEVPLQEVLTMIHTKEEGKQCSVKPKSPADELEAYFFDVQDYDEERVYPSDIKKIIQ.............................................................................................................................................................................................. 113
8 -2.720PB000795 Q74Z21_ASHGO/1-280 PB000795; Pfam-B_795;  ali follow..  226...AARELPDNSWQKHRARELGNLVMNMFDPEDVSTVDKCRKFLQKEFFDKYTDDPKV.................................................................................................................................................................................................................................................. 280
9 -2.710PB030138 Q7MX14_PORGI/1-113 PB030138; Pfam-B_30138;  ali follow..  13  2.......................GLGSFYKQRKPRSFDHKPIYYDQ------------------RRDELEKRIER-IRREVEQEEQAELDGQSSSHDYSGYRPRIRGTFVEGTQHLKERQLQGETQST............................................................................................................................................................................ 87
10 -2.570PB044380 A7LRP7_BACOV/1-223 PB044380; Pfam-B_44380;  ali follow..  131.............................AVSRVVTPDDLDNAGNVLFKLNDADKDE--------------------KSLRAALTLHTIRETDLFESQVENKNVIDSLMGKYLDGNGNPLSVRKTKSV............................................................................................................................................................................ 213

FFAS is supported by the NIH grant R01-GM087218-01
1 3 3 8 4 3   jobs submitted since Jan 1, 2011
Comments and questions to: webmaster

Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Li W, Godzik A. cd-hit: a fast program for clustering and comparing large sets of protein or nucleotide sequences. Bioinformatics. 2006 May 26;