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Query: PB000119 Q6KIT1_MYCMO/1-381 PB000119; Pfam-B_119;, from HGM_OVER

Results of FFAS03 search in COG1018
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MLENNGWNANTTKISTRKVTVMALLCAILFATKLAFGFVPGIEFVTSLFLIYAIFMPYKESLIIVFIFNILVVIFYGFGAWWLMYWPIFITNVTIGRVFKKWFKNKYVLASFAFLQGFSLIFWFYLSDLIWFGQAFAFSNIISAFPINLIEGFSNFLFCIVVAPNLVKILNKNLPNLWGEKFTFTFKEIKFKKINFFSSIFLSFISIFALTITFAYNSTFLNLAQIVRINTIRPNPNPNPNEIFNFDLNNLPIENGLLTVEAIWFLQSKMELTDTATVIIINNTAYVNINKNSVKHNNFAVNYLKSEENNWYLTGRDFPLLGLFVEKFFKDDVEVFSPKIPALYFVVNNSTKNIFSSVGISSLSTNNPKLIFTFTFDNGFSLast
1 -8.250[ZUD] KOG2101 Intermediate filament-like protein, sorting nexins, and related proteins containing PX (PhoX) domain(s)  ali follow..  27  1.................................................................................................................................................................................................................MNYTFSTNDNFLFL----------PNFSGCPSEI-NFEASNYKI-NQL---------RSK----------IFNKKKSKNKLENEFQFLNFQFFFVQFQKNE------------IIQPKFQKKNATFFS--IISVFPFIRHVFRRKKNSKKIHKNATTTQLIMMNMS...... 127
2 -7.890[K] KOG2294 Transcription factor of the Forkhead/HNF3 family  ali follow..  22  163.........................................................................................................................................................................................................LSYADL----ITKAIESS--------------AEKRLTLSQIYEWMVKSVPYDKGDSNSSAGW--------------------------KNSIRHN-LSLHFIRVQNEG---TGK-------------------------SSWWMLNPEGGKSGKSPRRRAASMDNNS............ 261
3 -7.150[K] KOG2181 LIM domain binding protein LDB1/NLI/CLIM  ali follow..  18  5.......................................................................................................................................................................................................IFLKFL--------FSDNAAFGRLAQSYRIQD-------------------------LLFIIVIFF-PLEFRIHDMNRRLYIFSSTGVSENDQQQWWDAFSHEFFDDDEPVAFASRERYIINRQFIPKFFR---SIFDSGMRELQYVLRGPSRECTLANGSQAYENENVLQITRYDQSSQFE 218
4 -7.100[C] KOG4110 NADH:ubiquinone oxidoreductase, NDUFS5/15kDa  ali follow..  24  119..................................................................................................................................................................................................................MLAIDINPTLMGLKSCRE-STVTGDEGKKPKK----KTENFPVHPVLYVIEIQYASQIEIGLE----MIVVS-----GVNRPKMMH------YSLLQKNN---------------ENFGKDDQEV---TYTIRYILV-------------------HPKIIVIKT...... 240
5 -6.960[M] KOG4629 Predicted mechanosensitive ion channel  ali follow..  14  660.................................................................................................................................................................................................LGIATTKFLLVISSQLLLVVFVFGNSCKTIEAVIFVFVMHP-----------FDVGDCEIDGVQMIVEEMNILTTVFLRFDNQKIVYPNTKPIANYYRSPDMQDEFFVHIATPPEKTTALRQR--------ILSYVDNKKDHWHPSPMIVFRDMCGLNS............................. 807
6 -6.790[O] COG5160 Protease, Ulp1 family  ali follow..  14  347.........................................................................................................................................................................FPDNARKRALKYLNQSNSVSSSEPIITKFNIPITLKDLHTLRNRQWLNDEVINFMNLISERSKIDSSLPRVHGFNTFFYTSL-QRRGYAGVRR-WAKKARVNIADMDAVFIVHLDVHINKSKKRFEY-DLLRDYYIAEVSDWENNGHD---CGVFA-QFSQNDMPELRIKM--AASIIDAQ............................... 566
7 -6.530[W] KOG3545 Olfactomedin and related extracellular matrix glycoproteins  ali follow..  11  380............................................................................................................................................................................MKDPAARDDRIYVTNYYYGNSLVEFRNLFKQGRWSNMYKLPYNWIGT----GHVVYQGAFYYN-RAFTKNIIKYDLRQRFVESGL------WVIYPAVDDRDEAQP---EVIVLSRLDPGDLRETTWKTRLRRNSYGNCFL------VCGIL---YAVDTYNQQEGQVAYAFDTHTGTDARP-NEHAYTTQIDYNPKERVLYAWDNGH. 603
8 -6.490[J] KOG0829 60S ribosomal protein L18A  ali follow..  14  7..............................................................................................................................................................................................................................LKEYEVVGRKLPSEKEPQTPLYKMRI----APDNIVAKSRFWYFLRQLKKFKKTTGEIVSIKQVYETSPVKIKNFGIWLRY-RSGTHNMYREYRDLTVGGA-VTQCYRDSIQIIK-KFPLVQRVHHKGNRKLF--------SFRKPRTYF......... 176
9 -6.470[A] KOG1609 Protein involved in mRNA turnover and stability  ali follow..  17  719......................................................................................................................................................................................KFSDVDLIYPDIDLEKECILLLIHFLCVAFLIGYFSNVFYLQLALIPCFLAVHVVGDSNEV---------------TVPAVRVVRLQVDYRNASVSDLQKIHKWNAIMRNSVLAS------LKFINKHWLICGGSAQVTGEIVDRHYRINVTLIAERDPVKNAKVGTSTVYAVAHIGLKG--TNALKTL-KLAFDEAF. 925
10 -6.330[Z] KOG0035 Ca2+-binding actin-bundling protein (actinin), alpha chain (EF-Hand protein superfamily)  ali follow..  14  31..........................................................................................................................................................................................EKQQKKTFTAWCNSHLR-TAIDNIEEDFRNGLKLMLLLEVISGETL-PKPDANVNKALDFHLVSIGAENLKMTLGMIWTIILRFAIQD------------ISVEEMTAKEQRKTAPYKNVNVQNFHLSFKDGLAFCALIHRHRPDLIDYAK-------LSKDNPLENLNTAFDVAEKYLDIPRML.......... 223

FFAS is supported by the NIH grant R01-GM087218-01
1 2 7 7 0 6   jobs submitted since Jan 1, 2011
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Ye Y, Osterman A, Overbeek R, Godzik A. Automatic detection of subsystem/pathway variants in genome analysis. Bioinformatics. 2005 Jun 1;21 Suppl 1:i478-i486.