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Query: HGC00044 gi|162658718|dbj|BAAX01000887.1|1.0 TMP00920;, from HGM_OVER

Results of FFAS03 search in CSGID
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst YRYYETRYADCVNGVGNAASPVGAYASSTEWNYDNEVAYGFGYGLSYTTFTQEIQGQPEISVNIDSETGAPQAYATFNVKVTNTGKVPGKTSVQIYGQAPYTEGGLEKVAIQLLNFEKSSELAPGASEIVSVKVDLQYIASYDMEHDNGDGTTGTYVLDPGTYYFAAGNGAHDALNNILVLQGADESKMVGTGSAAAAVAQEITEDLISRTAFSVSKTGEKISNQIPYADWNYYQPGEVTYLTRADWAGTFPKTYDQMTLTSEKLISDLNGNYYTIATDDDTSDIKWGENSNLMFYQMFGLDFDDPKWDELLDKMTLEEAQYLATYGGPSIPGVESIGTVETYMTENAGNGVAVNLNASKLast
1 -45.600IDP04361 gene: bglB; putative beta-glucosidase [Yersinia pestis CO92] YPO2803 [Yersinia pestis CO92]  ali follow..  23  547LEDSPS-FGNYPGNAKTVIYGEGIYVGYRYFDTRIAPMYPFGYGLSYSTVNYGKISPEKPVFNID-----TENSIEVSIPVRNTSGIDTKEVVQLYVHDN--ASRLDRPEQELKAFEKVS-LSAGEEKRVAFKLDKRAFSYYDEDKNN-------WVLEPGLFTLRIGRSSRDIHAETPLIVKSST.............................................................................................................................................................................. 717
2 -36.000IDP02224 putative glycosyl hydrolase [Yersinia pestis CO92] YPO0616 [Yersinia pestis CO92]  ali follow..  24  575..................LGKMRDYREYQPYDLADTPLYPFGFGLSYTRFTYSDLQL-------SHESLELGASLRVTMTVTNDGAVAGDEVVQCYIRQYV--ASTTRPQRELKGFQRIS-LQPGELGEVSFTLGVRELAFYGQHRR--------YAQEPSRISVFVGGDSTTPHQADFTLFENL............................................................................................................................................................................... 724
3 -8.690IDP05371 conserved repeat domain protein [Bacillus anthracis str. Ames] BA_3601 [Bacillus anthracis str. Ames]  ali follow..  1672..............................................................QVNRAATLVGDVLTYTVQITNTGTVTANDVQ--FVPNSVTINGALQPNLNPITGFGVGDIPVGETVVVTFQATVTNIPASGTITNVANITGSC-ATRLGDYSVQVTNTGTVTATNVQFIDVPSPSLEFVPGSVQINGIPQVGLNPFIGFSLPDLAVGDSVLITFAVNVIAVPPSSSIMNTARVTGDFELIPGEPPFTITNSSNTTVTPVNRGSLDMQKEVDNSIVGVGETVTY-----------------------------------TVRILNTG--MNVQFID-SPEAV....... 1976
4 -8.450IDP05461 conserved repeat domain protein [Bacillus anthracis str. Ames] BA_1618 [Bacillus anthracis str. Ames]  ali follow..  14 1807..............................................................TASSAFAAVGDTITYTTTLTNSGNTTANTPV--FVPDSVQINTIPQLGFRPDTGVPLDSIPVGGTITISFQAIVGSIPAINPTLNQSSTTYSI-VAPGNSYTVLLENIGNTTATNIIFT................................................................................................................................................................................... 1974
5 -7.010IDP06079 hypothetical protein jhp1479 [Helicobacter pylori J99] NP_224197 [Helicobacter pylori J99]  ali follow..  97YQVGGKWYYPTKVDLGEKFDGIASWYGPNFHAKKTS-------GEIYNMYAHTAAHKTLPMNTVVKVINVDNNS-STIVRINDRGPFVSNRIIDLSNAAARDIDMVQKGTASV----RLIVLGFGGVISKQYEQSFNANYS-KILHKEFKVGESEKSVSGGKFSLQMGAFRN............................................................................................................................................................................................ 256
6 -6.670IDP91533 gene: omcB; OmcB [Chlamydia muridarum Nigg] TC_0727 [Chlamydia muridarum str. Nigg]  ali follow..  16  222..............................................................QEGPESACLRCPVTYRINVVNQGTATARNVV-VENPVP---DGYAHASGQRVLTYTLGDMQPGEQRTITVEFCPLKRGRVTNIATNIEGADWSYVCKPVEYVISVSNPGDLVLRDVVIE................................................................................................................................................................................... 360
7 -6.420IDP05502 putative collagen-binding surface protein [Clostridium difficile 630] CD0386 [Peptoclostridium difficile 630]  ali follow..  10  853...............DTITL-EGLEVGTQY-------------GWQMLKEENAELLINGKRVESDYTFTADSETMKVEVAFTDATSLDGKQLVELYDLSNPDEPKKVTEHKDIED----------EGQTITFKEKPEVPEEPETPQTPEKPSRPSDSPKTGD...................................................................................................................................................................................................... 982
8 -6.410IDP05538 putative collagen-binding surface protein [Clostridium difficile 630] CD3392 [Peptoclostridium difficile 630]  ali follow..  10  853...............DTVTL-EGLEVGTQY-------------GWQMLKEENAELLVNGKRVESDYTFIADSENMKVEVAFTDATSLDGKQLVELYDLSNTDEPKKVTEHKDIED----------EGQTITFKEKPEVPEKPEQPQTPEKPSRPSDSPKTGD...................................................................................................................................................................................................... 982
9 -6.400IDP06073 gene: rpi; ribose-5-phosphate isomerase B [Helicobacter pylori J99] NP_223239 [Helicobacter pylori J99]  ali follow..  12  46..DYPDYAKLVCQKVLENAQSYGILV---------------GIGMSMGANRFKGIRAALCLDAYMAKMTRLHNNANVCLGEKISGIGVAESILEAFFSTEFEQGRHVLRIQKLDESLKS................................................................................................................................................................................................................................................. 151
10 -6.260IDP90415 gene: omcB; 60kDa Cysteine-Rich OMP [Chlamydia trachomatis D/UW-3/CX] CT_443 [Chlamydia trachomatis D/UW-3/CX]  ali follow..  15  221..............................................................QEGPENACLRCPVVYKINIVNQGTATARNVV-VENPVP---DGYAHSSGQRVLTFTLGDMQPGEHRTITVEFCPLKRGRATNIATSIAGADWSYVCKPVEYVISVSNPGDLVLRDVVVE................................................................................................................................................................................... 359

FFAS is supported by the NIH grant R01-GM087218-01
1 3 1 9 1 3   jobs submitted since Jan 1, 2011
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Pawlowski K, Pio F, Chu Z, Reed JC, Godzik A. PAAD - a new protein domain associated with apoptosis, cancer and autoimmune diseases. Trends Biochem Sci. 2001 Feb;26(2):85-7.