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Query: HGC00422 gi|163631722|dbj|BABG01004545.1|2.0 TMP00397;, from HGM_OVER

Results of FFAS03 search in CSGID
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MIMNATDWNTALFEKMSDEQDKFRDWLKSQPPEEILHHTYEYTVREDIVMAMEQLELTDAQAQALLDSPTPLADVYRYFEKLETGHMDVIRDSIENRADDVCRAKEELRTTPIYPHSAAYAREHGELEQYRASNNVNRQCKESIEAAVREHFDGMYLSHDAAKGVIETYGMERVSMVLSNTVQLQDWDGRYSRRNKEWAKTIPNDNPETVRCGYALNSHPAVLDGFIDLVREEQQRSRTQREKLEPSRPSVRDKLKQELPAHKSAAPKKREPERLast
1 -4.870IDP95010 Set165a_018 [Vibrio cholerae O1 biovar El Tor]  ali follow..  2.........................................................................................................PTDNRKNLERAAKINCTLPQLRKLNVQFLNIKYRCGRL--KGYETCQFKLGTFDDFINWIADQGGYRTSPHGHAYHVSRIRDQGDYAYNNIRWCSHQENLKETAHFWLVTDLL........................................................ 112
2 -4.690IDP92760 hypothetical protein [Vibrio cholerae O1 biovar El Tor] AGG36632 [Vibrio cholerae O1 biovar El Tor]  ali follow..  13  51.......................................................................................................................................IPIGAESEINSFLDGKLE-------IFNALLQQVGFDAMRYTLQQWFAGLENDGRYMDYSSSW............................................................................ 109
3 -4.660IDP05486 putative lipoprotein [Bacillus anthracis str. Ames] BA_4573 [Bacillus anthracis str. Ames]  ali follow..  35..............................................................................................TKAEEKVQITKEEEKSIQDVMDKFVRTTNEKNLAEHIELFSKKMPSAEDLKTQKEAAFQKGNKKIELEHIDIKASKAGYVVVETKEKEIDGEITLQIGKEEDGW............................................................................ 144
4 -4.580IDP95019 Set165a_006 [Vibrio cholerae O1 biovar El Tor]  ali follow..  13  51.......................................................................................................................................IPIGAESEINSFLDGKLE-------IFNALLQQVGFDAMRYTLQQWFAGLEKDGRYMDYSSSW............................................................................ 109
5 -4.300IDP00167 gene: rtxA; RTX toxin RtxA VC1451 [Vibrio cholerae O1 biovar El Tor str. N16961]  ali follow..  19 1707....RNDFAGGLLDGVQSQLD----DAKQLANDKI--AAAKQTLSDN----------NSKVKESVAKSEAGVAQGEQNRAGVEQDIADAQADAEKRKADALAKGKDAQQAESDAHHAVNNAQSRGDRDVQLAENKANQAQADA-DRPDRQGVTGSGLSGNAHS--VEGAG-ETDSHV--NTDSQTNADGRFSEG--------------------LTEQEQEALEGATNAVNRLQINAGIRAKNSVSSMTSMFSETNSKS---VVPTKVSPEPER 1940
6 -4.300IDP01351 toxin resistance protein VCA0387 [Vibrio cholerae O1 biovar El Tor str. N16961]  ali follow..  12  14.......................................................................ITDIFNFYIEQTNARFEEFPFTLENREEWFSQFSRTAKYQIYVAVENGVLQGFACSQKYRAIPAFDDTVEVSV---LAQEAKGKGLGSKLYTQLFSSIRAYGVHRILSGVALPNDASVALHKR................................................................................ 134
7 -4.080IDP91507 putative outer membrane protein PopN [Vibrio parahaemolyticus RIMD 2210633] VP1667 [Vibrio parahaemolyticus RIMD 2210633]  ali follow..  10  49LFDAMEELTSLGSEKAEKDLTKRKIKDGGVRVNEAHELVSDYLRKAQLQAYLNGFSEEKSHQYLALKA-----------YLSANPESKHLLALIDQAILKIEQNPDSWSQIDTEIRVSHFADE---------SKEQEFSSLHQLRGFYRDTVHSYQGLGSAYQDVVERFGEQEVSTAVDFMLQGMSAD...................................................................................... 245
8 -4.000IDP05595 putative 6-aminohexanoate-dimer hydrolase [Bacillus anthracis str. Ames] BA_3346 [Bacillus anthracis str. Ames]  ali follow..  111VVVHNGQL---VYERYFNGYNESEPHGMASLAKVFTGAIIQSLAEETYIKELKNTPFGKATLQQLMDMQVSVE---THGYEHPALENQDAQLYLASNILPRDKNYDGPMKIYDMLQEAKETAPPGSVFSYN-------NGSTETLAWIIRTITGKSLAENVSERIWSQIGMEENAYYVTDETKIEQASAGLNATARDMAR.......................................................................... 309
9 -3.980IDP06533 extracellular solute-binding protein, family 3 [Enterococcus faecium DO] EAN09753 [Enterococcus faecium DO]  ali follow..  10  56...........MMDIESRTVQGFDVDIAKAITKKILGDNGKTEFVKTRIPLLKNGNIDTDERKKQVDFSDVYFDAGQALLVKKGSQIKSVDDLNASTTVLAVKGSTSAANIRQHAPDAKILELENYAEAFTALQSGQGDA--TTDNAILLGIADENPEYELVGGTFEPYGIENFLKAVNQALEEMHADGTYDKIYQKW............................................................................ 261
10 -3.850IDP95412 set236a-014 [Undefined organism]  ali follow..  1...........MTGNPFRVALMTLVRGVQSRDFLLLCGSFFILVGTHLIPMSHEHGIPEVTAANMLAL-DLFGTMASGWLSDRYNNRWLLFWYYGLRGLSLI--------------PYAYGTGLFGLGLFVVFYGLDWVATVPPTVRLAADLFG-------KRNVGTVYAWIFAAHQLGAAT--------------AFGAGALRTWLGDYQVSFMLAGGLALLAAGMVLRIGHDPHGDFLAVQPADTAISAAD..................... 220

FFAS is supported by the NIH grant R01-GM087218-01
1 3 1 8 8 6   jobs submitted since Jan 1, 2011
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Pawlowski K, Pio F, Chu Z, Reed JC, Godzik A. PAAD - a new protein domain associated with apoptosis, cancer and autoimmune diseases. Trends Biochem Sci. 2001 Feb;26(2):85-7.