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Query: HGC00593 gi|162858151|dbj|BABB01011554.1|1.0 TMP00709;, from HGM_OVER

Results of FFAS03 search in CSGID
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MDMTDNNDDVLVKKFFSENRIDVPDDGFSRRVMRRLPDRTRRISRLWTAVCVVIGLLIFFRNKGFSVLVSCFDGIFSDVLARHEQLNNPHLLLPVAMVLILLWGVGFAVRERLast
1 -5.510IDP06373 gene: ORF17.5; ORF17.5 [Human herpesvirus 8] YP_001129370 [Human herpesvirus 8]  ali follow..  1..MNSSGQEDII---------SIPKSAFLSMLQSSIDGMKTTAAKM.................................................................. 35
2 -5.110IDP91515 gene: malG; maltose transporter permease [Vibrio vulnificus CMCP6] VV2_1587 [Vibrio vulnificus CMCP6]  ali follow..  12  176..........TIKGYFETIDNSLEEDGATPLVL--LPLSVPILAVVVGEV---PVASLLLSDVNSYTLAVGMQQYLYPQNYLWGDFAAAAVLSALPITIVFLLAQRWLVG.. 287
3 -5.100IDP04663 30S ribosomal protein S18 [Bacillus anthracis str. Sterne] BAS5325 [Bacillus anthracis str. Sterne]  ali follow..  28  22ITRIDYKDVDLLKRFVSERGKILP-TGTSAKYQRKLTVAIKRARQM.................................................................. 69
4 -4.760IDP06543 gene: fms11; LPXTG family cell surface protein Fms11 [Enterococcus faecium DO] AFK59402 [Enterococcus faecium DO]  ali follow..  13  1MKMIKKTQNKI---------QRICQKHFVSR-LKAV-SKRKYLHPI------MISIILIFTFLG--SLSSIYVNVYTETSNFANQTTEETNSPPYSEI.............. 79
5 -4.730IDP00429 gene: sfuA; iron(III)-binding periplasmic protein YPO2958 [Yersinia pestis CO92]  ali follow..  11  59VTLRNGKDSELGNQLIQEGSSSPADAPLDAATQAQVAKEYRPEDGRWTGIAARSTVFVY..................................................... 136
6 -4.710IDP05431 hypothetical protein lmo1224 [Listeria monocytogenes EGD-e] lmo1224 [Listeria monocytogenes EGD-e]  ali follow..  14 1031...............VSERIRELS--GFYPK---EVTMYVYRENIILTLMGIAAGFIL-----GFFLHRFIITTAEVDQMMFSPAISWTSYLFSGILTLVFATVVMVVMHIK 1122
7 -4.530IDP01967 hydrogenase 1 maturation protease [Salmonella typhimurium LT2] STM1789 [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2]  ali follow..  24  16......................WADEGFGIRVAERLYARYHWPEEVEIVDGGTQGLNLLGYVEQASHLLLL......................................... 64
8 -4.480IDP95308 hypothetical protein VCA0021 [Vibrio cholerae O1 biovar El Tor str. N16961] NP_232422 [Vibrio cholerae O1 biovar El Tor str. N16961]  ali follow..  20  93.....................SLTQAGIYYTDQEVIPDAAYTFVRVGIAVCLLALAVVFVGAGGFALLAFGLTNF..................................... 154
9 -4.420IDP95383 set238a-020 [Vibrio cholerae]  ali follow..  20  93.....................SLTQAGIYYTDQEVIPDAAYTFVRVGIAVCLLALAVVFVGAGGFALLAFGLTNF..................................... 154
10 -4.420IDP01909 putative hydrogenase maturation protease [Salmonella typhimurium LT2] STM1536 [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2]  ali follow..  16  14......................WADEGFGVRAAEKLFEQYADNEKVDVVDGGTQGLALLPWLQQTEKLLIM......................................... 62

FFAS is supported by the NIH grant R01-GM087218-01
1 3 1 9 1 3   jobs submitted since Jan 1, 2011
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Ye Y, Godzik A. Database searching by flexible protein structure alignment. Protein Sci. 2004 Jul;13(7):1841-50.