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Query: HGC00857 gi|162620543|dbj|BAAW01002606.1|2.0 TMP01139;, from HGM_OVER

Results of FFAS03 search in CSGID
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MLNFHSKKVMCIQQEIYARMIMYNFVQMITSHVVIVKKQRKHTYKANFSVATHMCRLFYREKTTSPNLETIIAKNLIPIRPDRHRERNLKVKTFHGFLYRVALast
1 -5.850IDP06402 gene: ORF67A; ORF67A [Human herpesvirus 8] YP_001129425 [Human herpesvirus 8]  ali follow..  13  5SDQLLPRDMQILFPTIYCRLNAINYCQYLKTFLVQRAQPAACDHTLVLESKVDTVRQVLRKIVSTDAVFSEARA-----RP..................... 80
2 -5.220IDP04370 iron compound ABC transporter, iron compound-binding protein [Bacillus anthracis str. `Ames Ancestor`] GBAA4766 [Bacillus anthracis str. `Ames Ancestor`]  ali follow..  107LEEISRLKPDLIITASFRGKAIKNELEQIAPTVMFDPSTSNNDHFAEMTETFKQIAKAVGKEEEGKKVLADMDKAFADAKA..................... 187
3 -5.000IDP05466 putative lipoprotein [Bacillus anthracis str. Ames] BA_1948 [Bacillus anthracis str. Ames]  ali follow..  11  77IPAFNELTPPDVAKDLHQQIVGYNLNTLIDTAMTKIEEGKVDVEQFKNSELMQTVDQVRDLKDKIQNL.................................. 146
4 -4.400IDP91955 ABC transporter substrate-binding protein - iron transport [Streptococcus pneumoniae str. Canada MDR_19A] SpneCM_010100006939 [Streptococcus pneumoniae str. Canada MDR_19A]  ali follow..  118FEAISNSKPDVITKEDYDTL----------SKIAPVAAYKSKPWQTLWRDMIKIDSKALGMEKEGDELIKNTEARISKELEK.................... 196
5 -4.380IDP00466 putative iron-siderophore transport system, periplasmic binding protein YPO1536 [Yersinia pestis CO92]  ali follow..  11  132IEQLINLKPDVISQSLYNQL----------SRFAPVVAYPGRPWLTSLTQQVELIGQTLGEESQIYPLLQELKNTLSAAGQT.................... 210
6 -4.110IDP90412 hypothetical protein [Chlamydia trachomatis D/UW-3/CX] CT_657 [Chlamydia trachomatis D/UW-3/CX]  ali follow..  20...ANNRKNFLFDAEKYLIPICYKQTIYLAKPLS-RFPMALEVWELHVQHVISLLKQQF........................................... 74
7 -3.880IDP04292 general secretion pathway protein H [Yersinia pestis CO92] YPO0812 [Yersinia pestis CO92]  ali follow..  1...MFHSQRAFTLLELLLAMIIISGLYYSVLITLPKGSGVVKSEAENLVQGLRYINQ............................................. 54
8 -3.830IDP95249 ferric acinetobactin binding protein [Acinetobacter baumannii ATCC 17978] YP_001085407 [Acinetobacter baumannii ATCC 17978]  ali follow..  46MERIYALKPDLIHVNQYQEL--SKIAPTIHYDINFNNSESNH----LVKDHMMTLGKIFNKEDLARQKVSELDEQVKQVQA..................... 127
9 -3.830IDP04340 50S ribosomal protein L5 [Bacillus anthracis str. Sterne] BAS0122 [Bacillus anthracis str. Sterne]  ali follow..  1MNRLKEKFQKEITPALVSKFNYKSVMQVPKIE------------KIVINTGVGDAVSNSKTLDNAVEELTQITGQKPVVTRAKKSIAGFRLREGMPIGAKVT 90
10 -3.790IDP00516 putative iron transport protein YPO4022 [Yersinia pestis CO92]  ali follow..  11  103YEALSQAKPDLIAQDAYNKL--SAIAPTIALDVDTQ------HFTQSLTQRTEQLASIFGKEEEAKTLLGNFSSQVNAIKQ..................... 180

FFAS is supported by the NIH grant R01-GM087218-01
1 3 3 2 3 6   jobs submitted since Jan 1, 2011
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Slabinski L, Jaroszewski L, Rychlewski L, Wilson IA, Lesley SA, Godzik A. XtalPred: a web server for prediction of protein crystallizability. Bioinformatics. 2007 Dec 15;23(24):3403-5. Epub 2007 Oct 5.