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Query: HGC00573 gi|163306732|dbj|BABD01003960.1|2.0 TMP00669;, from HGM_OVER

Results of FFAS03 search in H.sapiens
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
    .   10    .   20    .   30    .   40    .   50    .   60    .   70    .   80    .   90    .  100    .  110    .  120    .
# Score Template Links and tools%idFirst MAQQKNEVQSLLEKAMFQATVADFWMAGLELGVIKTNQRDEASPKEVCSGIPQFIIGVKGLAGFLGTSVSTVNRWKACGLLDDATLQCGKVVIFELPKVIEILRVSDKKNKFNVKSKKYNGKESNLast
1 -6.030sp|P26358|DNMT1_HUMAN DNA (cytosine-5)-methyltransferase 1 OS=Homo sapiens GN=DNMT1 PE=1 SV=2 (Range: 1351-1616)  ali follow..  12  192.................................................PEQHRVVSVRECARSQGFP-----TYRLFGNILDKHRQVGNAV----LEIKLCMLAKARESASAKIKEEEAAKD.. 266
2 -5.780sp|Q6P3X3|TTC27_HUMAN Tetratricopeptide repeat protein 27 OS=Homo sapiens GN=TTC27 PE=1 SV=1 (Range: 1-300)  ali follow..  190..........NIHQHLLEERSPLLFTLAENCIDQVMKLQNLFVDDSGRYLAIQFHLECRKAKDQLDIAKDIS-QIDLTGAL-------GKRTRFQENYVAQLILDVRREGDVLSNCE........ 300
3 -5.650sp|Q9NS64|RPRM_HUMAN Protein reprimo OS=Homo sapiens GN=RPRM PE=1 SV=1  ali follow..  12  1..MNPALGNQTDVAGLFLANSSEALERAVRCCTQASVVTDDGFAEGGPDERSLYIMRVVQIAVMCVLSLTVVFG----------IFFLGCNLLIKSEGMINFLVKDRRPSKE............. 100
4 -5.220sp|Q7Z6Z7|HUWE1_HUMAN E3 ubiquitin-protein ligase HUWE1 OS=Homo sapiens GN=HUWE1 PE=1 SV=3 (Range: 2401-2700)  ali follow..  246.....................................................................TALTRWTEECKV-------AESMH--KVSIVNHLEFLRDEELEERREKRRKQLAEE 300
5 -4.860sp|Q99767|APBA2_HUMAN Amyloid beta A4 precursor protein-binding family A member 2 OS=Homo sapiens GN=APBA2 PE=1 SV=3 (Range: 451-749)  ali follow..  17  167......QIMSINGTSLVGLPLATCQGIIKGL-----NQTQVKLNIVSCPPVTTVLIKRPDLKYQLGFSVQNICSLMRGGIAERGGVRVGHRIITAHEKIVQALSN.................... 272
6 -4.860sp|Q5XX13|FBW10_HUMAN F-box/WD repeat-containing protein 10 OS=Homo sapiens GN=FBXW10 PE=2 SV=2 (Range: 901-1052)  ali follow..  13  88..................LTVKEEKEHQEAKMKEYQARESTGVVDPGKVSKAAWIRKIKGL---------PIDNFTKQGKTAAP--ELGQNVFI............................... 152
7 -4.840sp|P47804|RGR_HUMAN(removed signalp:1-32) RPE-retinal G protein-coupled receptor OS=Homo sapiens GN=RGR PE=1 SV=1  ali follow..  12  11...KTPELRTPCHLLVLSLALADSGISLNALVAATSSLLRRWPYGSDGCQAHGFQGFVTALASICSSAAIAWGRY.................................................. 82
8 -4.770sp|Q9BU79|CG023_HUMAN Transmembrane protein C7orf23 OS=Homo sapiens GN=C7orf23 PE=2 SV=1  ali follow..  12  4FATRTYGTSGLDNRPLFGETSAKINLVVGSLTSLLILVTLISAFVFPQLPPKPLNIFFAVCISLSSITACILIYWYRQGDLEPKF----RKLIYYIIFSIIML...................... 105
9 -4.710sp|Q5XX13|FBW10_HUMAN F-box/WD repeat-containing protein 10 OS=Homo sapiens GN=FBXW10 PE=2 SV=2 (Range: 751-1050)  ali follow..  14  238..................LTVKEEKEHQEAKMKEYQARESTGVVDPGKVSKAAWIRKIKGL---------PIDNFTKQGKTAAP--ELGQNV................................. 300
10 -4.670sp|Q9NX61|T161A_HUMAN Transmembrane protein 161A OS=Homo sapiens GN=TMEM161A PE=2 SV=1  ali follow..  3......................................................VLGVQLVVTLLTAT--LMHRLAPHCSFARWLLCNGSLFRYSEEELRALAGKPRPRGRKERWANGLSEEKP. 73

FFAS is supported by the NIH grant R01-GM087218-01
1 3 1 9 1 3   jobs submitted since Jan 1, 2011
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Ye Y, Godzik A. Database searching by flexible protein structure alignment. Protein Sci. 2004 Jul;13(7):1841-50.