current user: public

Please be advised that we have recently moved our server to a new location. We tried our best to fully test all functions on the website, but if something does not work for you please let us know.

Query: PB000119 Q6KIT1_MYCMO/1-381 PB000119; Pfam-B_119;, from HGM_OVER

Results of FFAS03 search in HGM_OVER
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
    .   10    .   20    .   30    .   40    .   50    .   60    .   70    .   80    .   90    .  100    .  110    .  120    .  130    .  140    .  150    .  160    .  170    .  180    .  190    .  200    .  210    .  220    .  230    .  240    .  250    .  260    .  270    .  280    .  290    .  300    .  310    .  320    .  330    .  340    .  350    .  360    .  370    .  380
# Score Template Links and tools%idFirst MLENNGWNANTTKISTRKVTVMALLCAILFATKLAFGFVPGIEFVTSLFLIYAIFMPYKESLIIVFIFNILVVIFYGFGAWWLMYWPIFITNVTIGRVFKKWFKNKYVLASFAFLQGFSLIFWFYLSDLIWFGQAFAFSNIISAFPINLIEGFSNFLFCIVVAPNLVKILNKNLPNLWGEKFTFTFKEIKFKKINFFSSIFLSFISIFALTITFAYNSTFLNLAQIVRINTIRPNPNPNPNEIFNFDLNNLPIENGLLTVEAIWFLQSKMELTDTATVIIINNTAYVNINKNSVKHNNFAVNYLKSEENNWYLTGRDFPLLGLFVEKFFKDDVEVFSPKIPALYFVVNNSTKNIFSSVGISSLSTNNPKLIFTFTFDNGFSLast
1 -114.000PB000119 Q6KIT1_MYCMO/1-381 PB000119; Pfam-B_119;  ali  100  1MLENNGWNANTTKISTRKVTVMALLCAILFATKLAFGFVPGIEFVTSLFLIYAIFMPYKESLIIVFIFNILVVIFYGFGAWWLMYWPIFITNVTIGRVFKKWFKNKYVLASFAFLQGFSLIFWFYLSDLIWFGQAFAFSNIISAFPINLIEGFSNFLFCIVVAPNLVKILNKNLPNLWGEKFTFTFKEIKFKKINFFSSIFLSFISIFALTITFAYNSTFLNLAQIVRINTIRPNPNPNPNEIFNFDLNNLPIENGLLTVEAIWFLQSKMELTDTATVIIINNTAYVNINKNSVKHNNFAVNYLKSEENNWYLTGRDFPLLGLFVEKFFKDDVEVFSPKIPALYFVVNNSTKNIFSSVGISSLSTNNPKLIFTFTFDNGFS 381
2 -5.920PB001572 gi|163816107|ref|ZP_02207475.1| hypothetical protein COPEUT_02291 [Coprococcus eutactus ATCC 27759]gi|158448527|gb|EDP25522.1| hypothetical protein COPEUT_02291 [Coprococcus eutactus ATCC 27759]  ali follow..  13  83...............................................................................................................................................................................................................................VQNTTDKTVNQQAGDIYNYERPSQLTQWPVQIKLAPVNAPYFDGAKLLIAADCTAY-----AYASFHEKFIKGHVTLIGCPKLDSVDYS------KLTEIIRRNDIQS-VTIVRMEVPGLEMAAKKALQDSGKFIPWQVATISDGRIL.......... 223
3 -3.610PB040621 Q8A865_BACTN/1-132 PB040621; Pfam-B_40621;  ali follow..  10  29.............................................................................................................................................................................................................TVYAFGIAASFTDTVVYFTDIQILDSAKVSKE---RDLYSYQLKN--------------YVEDNGLQQNSTCMIYFSENEATKILSKYKRNRNTTVTRIDTDKFHF...................................................................... 128
4 -3.380PB014033 A5ZI39_9BACE/1-158 PB014033; Pfam-B_14033;  ali follow..  15  18.............................................................................................................................................................................................................................................................ENGMQKVDALSFTEAEARIIEEMTPFISGEFTVSDIKRANYSE---LFPSDEESADRWFKCKLIFITLD---EKKTSTQVLVQAADLRDAVKKLDEGMKGTMADYQIGMVSETPLMDVYPYSAGPN.. 149
5 -3.230PB048631 gi|160885545|ref|ZP_02066548.1| hypothetical protein BACOVA_03545 [Bacteroides ovatus ATCC 8483]gi|156109167|gb|EDO10912.1| hypothetical protein BACOVA_03545 [Bacteroides ovatus ATCC 8483]  ali follow..  17  2................................................................................................................................................................................................KIKFLSFIASFFMVSFVITIEYSPDATIHAFADTAGLGSYKFTIDQLSREIYNED--SLPVHADTIIDDSVININDSIDLREPLTIKVWSTEALAGISPNQTKEYTIKVNVHQHDPDRWNHVGKMQDEIIGEQKTIEFNNLKVYQNSNYSNWTAAGTNTTGDLTSTLPNSILPLNGIILATYESTDGVA 238
6 -3.020PB011051 Q8A0P0_BACTN/1-227 PB011051; Pfam-B_11051;  ali follow..  13  1.....................................................................................................................................................MKTVFNIVLVLCAAALIYICYSSIMGPINFEKAKKEREQAVIARLIDIRKAQQEYRSL-------MYTEHFDTLIDFVKNQKLPFVMKVG-------QLTDDQLESGLTEKKAMAIINKAKEVKKNGLENFKRDTMWVAV-MDTIYPKGFNADSMKY-----YGNGAIFEMNVKNDTAKSGAPVYLFEVKAPYETYLGGLDRQEIINLKDLNEKLGRYSGLIDNPNNGAG.. 225
7 -2.610PB021133 Q64YN4_BACFR/1-310 PB021133; Pfam-B_21133;  ali follow..  16  1.......................................................................................................................................................................................................MHIDFALPSNGTYNNAGSSRQL-ANYLEHEDLERMEKGLYTDSFFNLTENNIYKSKVIKDIDS----IGQLLKTDAKFYAIH-----VSPSEKELQAPEYAKNFNKG------LSEADI----KFYGKIHFNRSHSDNELNMHCHLIV--SRKDQSNKKKLSPLTTKKGPIKGGFGFGRLFN 197
8 -2.580PB018258 Q7MT99_PORGI/1-157 PB018258; Pfam-B_18258;  ali follow..  8....................................................................................................................................................................................................................................................LCIYADFPYEFAVCAPRTDCPKREQCLRASAYDGVLARGLQKITVINPLIPTSEQGCKAFADNTPVLFAHG-----ITHLYDELPHHAVQSLKHRLLTYYYRIYRKERDSFVRAGFSSDLIRYDAMVYMYELQS... 152
9 -2.580PB009661 _Gut.Meta.Jp.0000785_ gi|162567239|dbj|BAAU01000237.1||2 (- 3549:4008~0 complete)  ali follow..  10  1.......................................................................................................................................................................................................................................................................WSVREGELLDEAVDFCRKRGLEFYAVNSNMPEEADMSALRSRKVSADMYIDDRNL............................................................... 56
10 -2.390HGC00044 gi|162658718|dbj|BAAX01000887.1|1.0 TMP00920;  ali follow..  1................................................................................................................................................................................YRYYETRYADCVNGVGNAASPVGAYASS----EVAYGFGYGLSYTTFTPEISVNIDSETGAPQAYATFNVKVTNTGKVPGKTSVQIY---KVAIQLLNFEKSSELSEIVSVKVDLQYIASYDMEHDNGDGTTGTYVLDPGTYYFA-------------------------AGNGAHDALNNILVLQGAD................ 185

FFAS is supported by the NIH grant R01-GM087218-01
1 2 7 4 5 9   jobs submitted since Jan 1, 2011
Comments and questions to: webmaster

Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Sasin JM, Godzik A, Bujnicki JM. SURF'S UP! - protein classification by surface comparisons. J Biosci. 2007 Jan;32(1):97-100.