current user: public

Please be advised that we have recently moved our server to a new location. We tried our best to fully test all functions on the website, but if something does not work for you please let us know.

Query: PB001823 Q5L7Q9_BACFN/1-326 PB001823; Pfam-B_1823;, from HGM_OVER

Results of FFAS03 search in HGM_OVER
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
    .   10    .   20    .   30    .   40    .   50    .   60    .   70    .   80    .   90    .  100    .  110    .  120    .  130    .  140    .  150    .  160    .  170    .  180    .  190    .  200    .  210    .  220    .  230    .  240    .  250    .  260    .  270    .  280    .  290    .  300    .  310    .  320    .
# Score Template Links and tools%idFirst MKKVILAVASIALWTSCIEDEKDYSQIIETRVANCETSKDFSVPVKEGYTTFVTSGEDTLAMANEPITIRIPKNATISTRAEGDGINISYTILDEGSETTYAKVWQAIMFEDTQNGDYDYNDLIIHVKNTASNHAYQHPTETWQTIEIQPIALGSTKTIKLGCILSDGSTHMISDDVRTDLFGGRQGFINTVNDNDPIRYKLASTNIKNYAMPKKEKTSAAWVAWFIEVDGKRMYAASSDIDYKSYDMVNKENMPYGLAVSNGNGTFSYPQEKNSLFETYPGFSDWINGKVSSIGSFQKELVYKYCSGGIIGEDGKSHKIWDYLDLLast
1 -115.000PB001823 Q5L7Q9_BACFN/1-326 PB001823; Pfam-B_1823;  ali  100  1MKKVILAVASIALWTSCIEDEKDYSQIIETRVANCETSKDFSVPVKEGYTTFVTSGEDTLAMANEPITIRIPKNATISTRAEGDGINISYTILDEGSETTYAKVWQAIMFEDTQNGDYDYNDLIIHVKNTASNHAYQHPTETWQTIEIQPIALGSTKTIKLGCILSDGSTHMISDDVRTDLFGGRQGFINTVNDNDPIRYKLASTNIKNYAMPKKEKTSAAWVAWFIEVDGKRMYAASSDIDYKSYDMVNKENMPYGLAVSNGNGTFSYPQEKNSLFETYPGFSDWINGKVSSIGSFQKELVYKYCSGGIIGEDGKSHKIWDYLDL 326
2 -4.700HGC00522 gi|163636101|dbj|BABG01000172.1|3.0 TMP00580;  ali follow..  11  2..................................................................................................................QTNYKRQRMNI-FDIAKQNQEKAWQVIKNTNIIQIWEDAGGSLRTGLLMKHRDIDFHIYSSPLNLTDSFQAMARLAENPSIKRIECANLLHTIEWHAWYQNEENELWQMDMIHIREGSRYDGYFEKVAQRISEIMTDEIRETILRLKYETPE-TEKIIGVEYYQAYSGFKEWRKQHPVT-VEW............................. 201
3 -3.790PB005346 A0R807_PELPD/1-258 PB005346; Pfam-B_5346;  ali follow..  1.............................................................................................................MTDSWAIDIK-NQFHHNWGMSQINQTTSGNFYSHRNITDQVLENFTDALDCLTAHLMLECSEVLAGVKPANLISIVNRTRPCGRNLYLLWQQHHTDLAQRLNNLNFMVLQSRQQSLLLLCYDHVR-LEHHLSHPGIRTLLHKAGYKDDADCEGMLLELRFPHE-IGLFIGYPDVAAFMGLVRLPFT-W-----------KIYGNPARSLALAEQYR. 218
4 -3.620PB004588 Q64QH1_BACFR/1-389 PB004588; Pfam-B_4588;  ali follow..  25LSGTIILVSCFLLLAGACDNSDRIETETQANGVLLNFNASTIDATTTETRSVTKDNASRGEIFEGSRNLKATMSRPSGDAPWNWEFSNNASGTVVTPRGPEGKPLRVIAY---YPNNPQQKEILYNTNTSYTIPSSGGSDKVTIPLKFQHAYSWISIKVTKSVDKGSHKLSGVSIDNLSGGWIKNKGKINPATGMAMQGAIQGPIGEVRTAEVLDDTATPIIYDFLVPAFMDR-----NVKDDDLVFTLIIDGKKEIFSLGREHLTYNVEFNNSSLN---MRLLNWTSTRID.................................. 359
5 -3.140PB053359 gi|153891307|ref|ZP_02012332.1| conserved hypothetical protein [Opitutaceae bacterium TAV2]gi|151582630|gb|EDN46158.1| conserved hypothetical protein [Opitutaceae bacterium TAV2]  ali follow..  80...............................................................................................................................................................................................................................................HQPGLGEVYISTGSLYLCLGLPASDDFWSQPDAPWTSARVW.............................................. 126
6 -2.980PB004718 Q5LIA4_BACFN/1-189 PB004718; Pfam-B_4718;  ali follow..  23.................................................................................NGNGNGTDSLQATRYVTRATMYGVGYTNVFDTYLSPQEYKGIEFRISLAYTHNRVDNNNTFAGLVNWNYLLAGGMGDFNGGFVYNRNTNNPASARAYINLDASGMAIWHT-----KIKNYPLALRYQVNLPV................................................................................................................. 186
7 -2.840HGC00164 gi|163636082|dbj|BABG01000191.1|4.0 TMP00833;  ali follow..  15  73............................................................................................................LFADSLP-D-TFGNQIINEWFASKGLSGEEITPLDRLCYVGKRGMGA........................................................................................................................................................................... 117
8 -2.620PB017610 Q11T14_CYTH3/22-188 PB017610; Pfam-B_17610;  ali follow..  1...........................................................................................................................MNRLGKIVFGLGIAVCLFSATNSIAQVKTHSS-------LRAENLEVILVKDIQHISDTTHHTHAHDPHKSSYKILHVNFMLVSSDPSVTGYKSV-------MMRLIDPHGVDIYDPAAGGGLFNLNGKETPY-----TFKVSTKLDGQPLKIDFLYNHPKHFRHG---------------------------LHIIELYVD. 156
9 -2.560PB015266 gi|154494998|ref|ZP_02034003.1| hypothetical protein PARMER_04044 [Parabacteroides merdae ATCC 43184]gi|154085548|gb|EDN84593.1| hypothetical protein PARMER_04044 [Parabacteroides merdae ATCC 43184]  ali follow..  1MKRIVSMMVIFTLLLGGMTHVQAQTSKAAXXXXXXXXXXXXXXXRLAKDAVMGEEAFNNAMQAITNRSFVLEANSVQPLNGRVYYVNSNNFVSLNDGQAMVQIASNSPYPGPNGLGGITVQGSASNVQVKQENNGN-------VYLSMSVQGIFISATVNLVLYSGTNNAMVTVDPNFSGNNLTMNGTLLPYSDSNVFQGT............................................................................................................................. 195
10 -2.540PB083081 gi|160890648|ref|ZP_02071651.1| hypothetical protein BACUNI_03093 [Bacteroides uniformis ATCC 8492]gi|156859647|gb|EDO53078.1| hypothetical protein BACUNI_03093 [Bacteroides uniformis ATCC 8492]  ali follow..  1MKKTIFYSLFSALFMLTSCSMFEIDNYEEPS--ETIWGEVVDEATGKRVLTDQGSEGIRVRLTELSWGDNVQHNPDFYCMMDG-----------------------TFQNTKIFKGEYNVRIDGPFIPLVRENTDGTLLHDGSVNTEI-----SGTTKVKFEVQ-GVIKAQVRVTRGVSDEVFREKIQPMGNWKDEYLNVTDIQFFVSYSNTVGYRARDERWSSSINYEGKSFEGLLGKEVTIQSNGNVPSGRKVF-VRAAARINY---DTPVGSGTRRW-NYSEPME...................................... 267

FFAS is supported by the NIH grant R01-GM087218-01
1 3 3 2 5 8   jobs submitted since Jan 1, 2011
Comments and questions to: webmaster

Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Grynberg M, Jaroszewski L, Godzik A. Domain analysis of the tubulin cofactor system: a model for tubulin folding and dimerization. BMC Bioinformatics. 2003 Oct 10;4(1):46.